mRNA_H-elongata_contig18341.4933.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18341.4933.1 vs. uniprot
Match: A0A6H5JMD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMD8_9PHAE) HSP 1 Score: 306 bits (784), Expect = 3.020e-101 Identity = 148/191 (77.49%), Postives = 170/191 (89.01%), Query Frame = 1
Query: 1 KVGLLGGKDLDLSNPCDALTLEGVKTKTCFVSENIETDNSKMELSISKPYTLPDGTTISLGRERYRAAELLFDPATASREEGDSLQDTVLDAILACERKTWAILAQTVILTGGTTELTGLNRRLQRELTKASRASGIRLKFTVMVPEDDHNNTVWVGGSMLASTGALDGLWFTRAEYEEYGAGPIHAKFAA 573
KVGLLGG D D +PCD + LE +K K CFVSE+++ DN+KMELS+SKPYTLPDGT ++LGRERYRAAELLFDPA + REE +SL +TVLD+IL+C+RKTW ILAQTVILTGGTTE+ GLNRRLQRELTKASRA+G+RLK+TVM PEDDHNNTVW+GGSML S GALDGLWFTRAEYEEYGAG IH+KFAA
Sbjct: 205 KVGLLGGDDFDPDDPCDVMKLEALKAKVCFVSEDVDKDNAKMELSMSKPYTLPDGTRVTLGRERYRAAELLFDPAMSLREE-ESLPNTVLDSILSCDRKTWPILAQTVILTGGTTEMPGLNRRLQRELTKASRANGVRLKYTVMGPEDDHNNTVWIGGSMLVSAGALDGLWFTRAEYEEYGAGYIHSKFAA 394
BLAST of mRNA_H-elongata_contig18341.4933.1 vs. uniprot
Match: D8LK63_ECTSI (Actin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK63_ECTSI) HSP 1 Score: 308 bits (789), Expect = 3.480e-98 Identity = 147/191 (76.96%), Postives = 172/191 (90.05%), Query Frame = 1
Query: 1 KVGLLGGKDLDLSNPCDALTLEGVKTKTCFVSENIETDNSKMELSISKPYTLPDGTTISLGRERYRAAELLFDPATASREEGDSLQDTVLDAILACERKTWAILAQTVILTGGTTELTGLNRRLQRELTKASRASGIRLKFTVMVPEDDHNNTVWVGGSMLASTGALDGLWFTRAEYEEYGAGPIHAKFAA 573
KVGL+GG + + +PCD + LE +K K CFVSE+++ DN+KMELS+SKPYTLPDGT ++LGRERYRAAELLFDPA + REE DSLQ+TVLD+IL+C+RKTW +LAQTVILTGGTTE+ GLNRRLQRELTKASRA+G+RLK+TVM PEDDHNNTVW+GGSMLAS GALDGLWFTRAEYEEYGAG IH+KFAA
Sbjct: 528 KVGLMGGDEFEPDDPCDVMELEALKAKVCFVSEDVDKDNAKMELSMSKPYTLPDGTRVTLGRERYRAAELLFDPAMSLREE-DSLQNTVLDSILSCDRKTWPVLAQTVILTGGTTEMHGLNRRLQRELTKASRANGVRLKYTVMAPEDDHNNTVWIGGSMLASAGALDGLWFTRAEYEEYGAGYIHSKFAA 717
BLAST of mRNA_H-elongata_contig18341.4933.1 vs. uniprot
Match: A0A0F7RNL9_GONPE (Actin-like protein n=2 Tax=Gonium pectorale TaxID=33097 RepID=A0A0F7RNL9_GONPE) HSP 1 Score: 121 bits (303), Expect = 1.900e-29 Identity = 71/188 (37.77%), Postives = 103/188 (54.79%), Query Frame = 1
Query: 10 LLGGKDLDLSNPCDALTLEGVKTKTCFVSENI--ETDNSKMELSISKPYTLPDGTTISLGRERYRAAELLFDPATASREEGDSLQDTVLDAILACERKTWAILAQTVILTGGTTELTGLNRRLQRELTKASR-ASGIRLKFTVMVPEDDHNNTVWVGGSMLASTGALDGLWFTRAEYEEYGAGPIHAK 564
LL + L+N + + VK K FV+ + E +++ + K YTLPDG IS+G ER+R AE+LFDP E G + + ++D++LAC+ L V+L+GGTT L G+ RL +ELT A+ A +R+ V + VW+GGS+LAS W TR EY+EYG +H K
Sbjct: 196 LLTEAGVKLTNSAELEIVRDVKEKLGFVALDFAAELGSARSSSLLHKEYTLPDGNCISIGEERFRCAEVLFDPRPLGHESGGGIANLLMDSVLACDIDVRRELLHNVVLSGGTTMLQGIAARLTKELTAAAPPACPVRV-----VAPPERKFLVWIGGSVLASLATFANQWITREEYDEYGPTVVHRK 378
BLAST of mRNA_H-elongata_contig18341.4933.1 vs. uniprot
Match: O24426_CHLRE (Actin-like protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=O24426_CHLRE) HSP 1 Score: 118 bits (296), Expect = 1.960e-28 Identity = 67/180 (37.22%), Postives = 101/180 (56.11%), Query Frame = 1
Query: 34 LSNPCDALTLEGVKTKTCFVSENIETDNSKMELS--ISKPYTLPDGTTISLGRERYRAAELLFDPATASREEGDSLQDTVLDAILACERKTWAILAQTVILTGGTTELTGLNRRLQRELTK-ASRASGIRLKFTVMVPEDDHNNTVWVGGSMLASTGALDGLWFTRAEYEEYGAGPIHAK 564
L+N + + +K + +V+ + +T+ + S +SK YTLPDG +I++G ER+R AELLFDP+ E+G+ + + DA+ AC+ L V+L+GGTT G+ RL +ELT A A +R+ V + VW+GGS+LAS + W T EY EYG G +H K
Sbjct: 204 LTNSAEMEIVRDIKERLSYVALDYDTELATARSSSVVSKDYTLPDGQSIAVGEERFRCAELLFDPSPLGHEKGEGIHTMLHDAVSACDIDVRKELLYNVVLSGGTTMTQGIAARLHKELTALAPSACTVRV-----VAPPERKFLVWIGGSVLASLASFASQWVTAEEYNEYGPGIVHRK 378
BLAST of mRNA_H-elongata_contig18341.4933.1 vs. uniprot
Match: A0A8J4DE75_9CHLO (Uncharacterized protein n=3 Tax=Volvox TaxID=3066 RepID=A0A8J4DE75_9CHLO) HSP 1 Score: 115 bits (289), Expect = 2.020e-27 Identity = 66/168 (39.29%), Postives = 98/168 (58.33%), Query Frame = 1
Query: 70 VKTKTCFVSENIETDNSKMELS--ISKPYTLPDGTTISLGRERYRAAELLFDPATASREEGDSLQDTVLDAILACERKTWAILAQTVILTGGTTELTGLNRRLQRELTK-ASRASGIRLKFTVMVPEDDHNNTVWVGGSMLASTGALDGLWFTRAEYEEYGAGPIHAK 564
+K + +V+++ E++ S + K Y LPDGT IS+G ER+R AE+LFDP RE+G + ++D+I AC+ L ++L+GGTT + G+ RL +E+T A S +R+ V PE + VW+GGS+LAS + W TR EY+EYG IH K
Sbjct: 216 IKERLAYVAQDFESELCVARSSSVMDKNYQLPDGTLISVGEERFRCAEVLFDPTPLGREQGGGVHKMMMDSINACDIDVRKDLLHNLVLSGGTTLVEGIAARLSKEVTAMAPPGSAVRV---VAPPERKY--LVWIGGSVLASLASFSSQWVTRDEYDEYGPSIIHRK 378
BLAST of mRNA_H-elongata_contig18341.4933.1 vs. uniprot
Match: A0A0B1S619_OESDE (Actin n=1 Tax=Oesophagostomum dentatum TaxID=61180 RepID=A0A0B1S619_OESDE) HSP 1 Score: 110 bits (276), Expect = 1.640e-26 Identity = 59/167 (35.33%), Postives = 97/167 (58.08%), Query Frame = 1
Query: 70 VKTKTCFVSENIETD--NSKMELSISKPYTLPDGTTISLGRERYRAAELLFDPATASREEGDSLQDTVLDAILACERKTWAILAQTVILTGGTTELTGLNRRLQRELTKASRASGIRLKFTVMVPEDDHNNTVWVGGSMLASTGALDGLWFTRAEYEEYGAGPIHAK 564
+K K C+V+ + E + S SI K Y LPDG I++G ER+RA E+LF P +E + + ++I++C+ L ++L+GG+T G+ R+++ELT + ++ +K +M P + +VW+GGS+LAS +W T+AEY+EYGA +H K
Sbjct: 92 IKEKLCYVAFDYEQEMIESVDSTSIDKNYELPDGQEITIGSERFRAPEVLFQPHVLGKESS-GIHENCYNSIMSCDIDIRKDLYMNIVLSGGSTMFPGITDRMKKELTTLAPST---VKVKIMAPPE-RKYSVWIGGSVLASLSTFQMMWITKAEYDEYGAAIVHRK 253
BLAST of mRNA_H-elongata_contig18341.4933.1 vs. uniprot
Match: UPI001E8E345A (actin beta/gamma 1 n=1 Tax=Lentinula edodes TaxID=5353 RepID=UPI001E8E345A) HSP 1 Score: 110 bits (275), Expect = 1.650e-26 Identity = 59/167 (35.33%), Postives = 93/167 (55.69%), Query Frame = 1
Query: 70 VKTKTCFVSENIETD--NSKMELSISKPYTLPDGTTISLGRERYRAAELLFDPATASREEGDSLQDTVLDAILACERKTWAILAQTVILTGGTTELTGLNRRLQRELTKASRASGIRLKFTVMVPEDDHNNTVWVGGSMLASTGALDGLWFTRAEYEEYGAGPIHAK 564
+K + C+V+ + E + + ++ K Y LPDG I++G ER+RA E LF P E + +TV D+I C+ L ++L+GGTT GL R+Q+E+T + AS +K ++ P + +VW+GGS+LAS LW ++ EY+E G G +H K
Sbjct: 77 IKERLCYVALDFEQELQTAARSSALEKNYELPDGQVITIGNERFRAPEALFQPHMVGLE-ASGIHETVYDSIFKCDLDVRRELYSNIVLSGGTTMFPGLADRMQKEITSLAPAS---MKVKIVAPPE-RKYSVWIGGSILASLSTFQNLWISKQEYDESGPGIVHRK 238
BLAST of mRNA_H-elongata_contig18341.4933.1 vs. uniprot
Match: D8TK19_VOLCA (Actin-like protein n=2 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TK19_VOLCA) HSP 1 Score: 113 bits (282), Expect = 2.060e-26 Identity = 63/187 (33.69%), Postives = 103/187 (55.08%), Query Frame = 1
Query: 10 LLGGKDLDLSNPCDALTLEGVKTKTCFVSENIETDN--SKMELSISKPYTLPDGTTISLGRERYRAAELLFDPATASREEGDSLQDTVLDAILACERKTWAILAQTVILTGGTTELTGLNRRLQRELTKASRASGIRLKFTVMVPEDDHNNTVWVGGSMLASTGALDGLWFTRAEYEEYGAGPIHAK 564
+L + L N + + +K + +V+ + E++ ++ + K Y LPDGTTIS+G ER+R +E+LFDP+ E+G + + D+I AC+ L + ++L+GGTT + G+ RL +E+T + S V+ P + VW+GGS+LAS + W TR EY+EYG +H K
Sbjct: 196 MLTESGVKLINTAEMEIVRDIKERLAYVALDFESELRVARSNSVMCKDYQLPDGTTISVGEERFRCSEVLFDPSPLGLEQGSGIHKMLTDSINACDIDVRKNLLENLVLSGGTTMVEGIAARLTKEVTAMAPPSAT---VRVVAPPE-RKFLVWIGGSVLASLASFSSKWVTRDEYDEYGPSIVHRK 378
BLAST of mRNA_H-elongata_contig18341.4933.1 vs. uniprot
Match: D5MRC0_9EUKA (Actin (Fragment) n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=D5MRC0_9EUKA) HSP 1 Score: 111 bits (277), Expect = 2.280e-26 Identity = 60/185 (32.43%), Postives = 100/185 (54.05%), Query Frame = 1
Query: 10 LLGGKDLDLSNPCDALTLEGVKTKTCFVSENIETDNSKMELSISKPYTLPDGTTISLGRERYRAAELLFDPATASREEGDSLQDTVLDAILACERKTWAILAQTVILTGGTTELTGLNRRLQRELTKASRASGIRLKFTVMVPEDDHNNTVWVGGSMLASTGALDGLWFTRAEYEEYGAGPIHAK 564
LL + + + + +K K C+V+ + + + +K + + K Y LPDG I++G ER+R E LFDP+ E + +T +I+ C+ L V+L+GGTT G+ R+Q+E+T + S +R+K V PE ++ VW+GGS+L+S + +W T+ EY E G +H K
Sbjct: 106 LLTERGYSFNTSAEREIVRDIKEKLCYVANDADAEMAKQDSELEKDYMLPDGRMITVGNERFRCPEALFDPSVLGME-ARGIHETTYKSIMGCDMDIRKDLYSNVVLSGGTTMYPGMAERMQKEITSLA-PSAMRVKI-VAPPERKYS--VWIGGSILSSLSSFQTMWITKEEYMENGPSIVHKK 285
BLAST of mRNA_H-elongata_contig18341.4933.1 vs. uniprot
Match: A0A250XJ58_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XJ58_9CHLO) HSP 1 Score: 109 bits (272), Expect = 2.880e-26 Identity = 63/174 (36.21%), Postives = 97/174 (55.75%), Query Frame = 1
Query: 70 VKTKTCFVSENIETDNSKMELSISKPYTLPDGTTISLGRERYRAAELLFDPATASREEG---------DSLQDTVLDAILACERKTWAILAQTVILTGGTTELTGLNRRLQRELTKASRASGIRLKFTVMVPEDDHNNTVWVGGSMLASTGALDGLWFTRAEYEEYGAGPIHAK 564
+K C VS+ + D+ + + Y LPDG I +G +R++A ELLF P+ S G SLQ VLD+I +C+ L +V+LTGGT+ L+GL RL++EL A ++K ++ + + +VW+GGS+L+S G+ +W ++ EYEE GA IH K
Sbjct: 47 IKESICRVSDQLFDDSVNSNIP-TVSYELPDGQEIHVGTDRFKAPELLFQPSLLSSYPGVKLTGKGTPASLQSLVLDSIASCDVDVRKELYASVVLTGGTSLLSGLRDRLEKELVVAG-PQAAKIKVSMPINTQERRFSVWIGGSILSSLGSFQQMWMSKKEYEEAGASLIHRK 218 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18341.4933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18341.4933.1 >prot_H-elongata_contig18341.4933.1 ID=prot_H-elongata_contig18341.4933.1|Name=mRNA_H-elongata_contig18341.4933.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=192bp KVGLLGGKDLDLSNPCDALTLEGVKTKTCFVSENIETDNSKMELSISKPYback to top mRNA from alignment at H-elongata_contig18341:3694..6558- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18341.4933.1 ID=mRNA_H-elongata_contig18341.4933.1|Name=mRNA_H-elongata_contig18341.4933.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2865bp|location=Sequence derived from alignment at H-elongata_contig18341:3694..6558- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18341:3694..6558- >mRNA_H-elongata_contig18341.4933.1 ID=mRNA_H-elongata_contig18341.4933.1|Name=mRNA_H-elongata_contig18341.4933.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1152bp|location=Sequence derived from alignment at H-elongata_contig18341:3694..6558- (Himanthalia elongata Himel1 dioecious)back to top |