prot_H-elongata_contig18340.4932.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig18340.4932.1
Unique Name	prot_H-elongata_contig18340.4932.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	320

Homology

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BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 1.040e-55
Identity = 176/361 (48.75%), Postives = 205/361 (56.79%), Query Frame = 0

Query:    1 DTTCAQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNKGSGSSDEIEPVGAGVSGARGKESAAAKNERREXXXXXXXXXXXXXXXX----------------------KHKN---VGKKKTGESHAEDGLKRKKKKKDKRDDQVGRSHEDGEGGKERGXAXXXXXXXXXXXXRERGPKRNGGGGADAGGVWERGARMPG-GEFSGVVYASSNAVVNQP-------AAPASLALGKVLDWRGLGSTGRGRGAGGRSXXXXXXXXXXXXXXXXXXEG---------VNTIGGMNRRR 319
            DT  ++GFCFIKYE+Q+STILAVDN NGI+LLGRT+RVDHKHKYSLPAEVRE+AEK +EERVARGE PS KGPQWRPG+AYEGKQ A  H+FHKGVDVFA P +GSGSSD+ +    G  G  G+ +         XXXXXXXXXXXXXXXX                      +HK      +K  G +H +D              +  RS E    G   G              R + P      GADA G WERGAR PG G  SG    SS+   +QP       A P  L+ G V+DWRGLG    GR AGGR XXXXXXXXX      XXX           +N++GGM+RRR
Sbjct:   69 DTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFAKPEQGSGSSDDSD----GAGGTLGESAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHKKDXXXEEKXEGRAHGKD--------------EKTRSSEHPRAGN--GGRGEERVGGRHDHRRGKEPPTGRSSGADASGAWERGARAPGDGPSSGGTPFSSS---SQPSGRAPALAPPVPLSSGNVMDWRGLG----GRAAGGRGXXXXXXXXXREGAGRXXXXXXXXXXXXXXMNSMGGMDRRR 402

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BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 3.390e-30
Identity = 65/114 (57.02%), Postives = 83/114 (72.81%), Query Frame = 0

Query:    5 AQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNKGSGSSDEIEPVGAG 118
            ++GF F+KYEDQRSTILAVDN NGI+LL RTLRVDHK KY+LP EV E+AE+ E+ R+  GE+    GP+W+PG AYEGK+    HD  KGVD+FA   +G   ++E   V +G
Sbjct:   74 SKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFAPVQEGEVDAEEDGLVSSG 187

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BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.370e-24
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 0

Query:    5 AQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEE-PSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNKGSGSSDE 111
            ++GF FIKYEDQRST+LAVDN NG+ELLGR +RVDH  KY LP+ +RE+ E  EE     G E    +  ++RPG AYEG + AN+ + HKGVD++  P+     S E
Sbjct:   75 SKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLYGGPDDSDDGSGE 182

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BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.220e-22
Identity = 54/103 (52.43%), Postives = 70/103 (67.96%), Query Frame = 0

Query:    1 DTTCAQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEE---ERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFA 100
            DT  ++GF F+KYEDQRSTILAVDN NG +LLGR LRVDH  KY LP E++++ +  +E   E+   G EP +    W+PG AYEGK+    H   +GVDV+A
Sbjct:   69 DTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAA-WKPGHAYEGKEIRGSHTLAQGVDVWA 170

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BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: W2N0T6_PHYPR (RRM domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2N0T6_PHYPR)

HSP 1 Score: 101 bits (252), Expect = 1.610e-21
Identity = 56/101 (55.45%), Postives = 70/101 (69.31%), Query Frame = 0

Query:    5 AQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEE-ERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNK 104
            ++GF FIK+EDQRSTILAVDN NG +LL R LRVDH  KY LP E++E ++  +E +R  RG           PG AYEGK+ A++ D HKGVDVFAAP +
Sbjct:   73 SKGFAFIKFEDQRSTILAVDNLNGFKLLDRVLRVDHVLKYKLPKELQEDSDSEDEGDRKQRG----------LPGHAYEGKELASDFDLHKGVDVFAAPEE 163

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BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A1V9ZVW6_9STRA (U2 snRNP component IST3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW6_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 3.610e-21
Identity = 53/100 (53.00%), Postives = 65/100 (65.00%), Query Frame = 0

Query:    1 DTTCAQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRER--AEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDV 98
            +T  + GF FIKYED RST+LAVDN NG  LL RTLRVDH HKY LP E+R++  A+  EEE   RG+          PG AY+GK   N++D H+GVD 
Sbjct:   69 ETGKSMGFAFIKYEDHRSTVLAVDNFNGSTLLERTLRVDHVHKYKLPKEIRDKEDAQDFEEEEKLRGQ----------PGHAYKGKDLENKYDIHQGVDT 158

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BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: H3GUF3_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GUF3_PHYRM)

HSP 1 Score: 99.0 bits (245), Expect = 1.530e-20
Identity = 51/100 (51.00%), Postives = 69/100 (69.00%), Query Frame = 0

Query:    5 AQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNK 104
            ++GF F+K++DQRST+LAVDN NG +LL R LRVDH  KY LP E++E ++  +E         + + P+  PG AYEGK+ A+  D HKGVDVFAAP +
Sbjct:   73 SKGFAFLKFQDQRSTVLAVDNLNGFKLLDRVLRVDHVLKYKLPKELQEDSDSEDE--------GADRRPRGLPGHAYEGKELASGFDLHKGVDVFAAPQE 164

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BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: G5A2U5_PHYSP (RRM domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A2U5_PHYSP)

HSP 1 Score: 97.1 bits (240), Expect = 3.650e-20
Identity = 57/137 (41.61%), Postives = 77/137 (56.20%), Query Frame = 0

Query:    6 QGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNKGS------GSSDEIEPVGAGVSGARGKESAAAKNERRE 136
            +GF F+K+EDQRST+LAVDN NG  LL R LRVDH  KY LP E++E ++  ++E+  R        P+  PG AYEGK+ A++ D HKGVD      +G          DE        +G RG+   +A   RR+
Sbjct:   74 KGFAFLKFEDQRSTVLAVDNLNGFRLLDRVLRVDHVLKYKLPKELQEDSDSEDDEQTERR-------PRGLPGHAYEGKELASDFDLHKGVDKRRQEQRGKEEREAESKGDEAAAAAPSATGWRGRLEPSAPRPRRD 203

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BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A6A3KRR2_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KRR2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.230e-20
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 0

Query:    5 AQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFAAPNK 104
            ++GF F+K+EDQRST+LAVDN NG  LL R LRVDH  KY LP E++E ++          E+   + P+  PG AYEGK+ A++ D  +GVDVFAAP +
Sbjct:   73 SKGFAFVKFEDQRSTVLAVDNLNGFRLLDRVLRVDHVLKYKLPKELQEDSD---------SEDEQERRPRGLPGHAYEGKELASDFDLQQGVDVFAAPEE 163

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BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Match: A0A6G0X0J2_9STRA (RRM domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X0J2_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 4.470e-20
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 0

Query:    1 DTTCAQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEVRERAEK---LEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVF 99
            DT  + GFCFIKYE+  ST+LAVDN NG  LL R LRVDH HKY LP E+R++ +    L+++   RG+          PG AYEGK+ AN++D H+GVDVF
Sbjct:   69 DTGKSLGFCFIKYENHLSTVLAVDNFNGAMLLERMLRVDHVHKYKLPKELRDKEDDEGVLDDDAELRGQ----------PGHAYEGKELANKYDIHQGVDVF 160

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot

BLAST of mRNA_H-elongata_contig18340.4932.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPK4_ECTSI	1.040e-55	48.75	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A4D9D1V2_9STRA	3.390e-30	57.02	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A7S2RL84_9STRA	3.370e-24	51.85	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
A0A835YJH4_9STRA	2.220e-22	52.43	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
W2N0T6_PHYPR	1.610e-21	55.45	RRM domain-containing protein n=11 Tax=Phytophthor...	[more]
A0A1V9ZVW6_9STRA	3.610e-21	53.00	U2 snRNP component IST3 n=1 Tax=Thraustotheca clav...	[more]
H3GUF3_PHYRM	1.530e-20	51.00	RRM domain-containing protein n=1 Tax=Phytophthora...	[more]
G5A2U5_PHYSP	3.650e-20	41.61	RRM domain-containing protein n=1 Tax=Phytophthora...	[more]
A0A6A3KRR2_9STRA	4.230e-20	50.00	RRM domain-containing protein n=2 Tax=Phytophthora...	[more]
A0A6G0X0J2_9STRA	4.470e-20	51.96	RRM domain-containing protein n=1 Tax=Aphanomyces ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 127..157
None	No IPR available	PANTHER	PTHR45880:SF1	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 5..215
None	No IPR available	PANTHER	PTHR45880	FAMILY NOT NAMED	coord: 5..215
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..67 e-value: 3.9E-7 score: 32.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 5..37 e-value: 1.5E-5 score: 24.8
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..42

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig18340	contig	H-elongata_contig18340:5079..7054 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig18340.4932.1	mRNA_H-elongata_contig18340.4932.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig18340 5079..7054 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig18340.4932.1 ID=prot_H-elongata_contig18340.4932.1|Name=mRNA_H-elongata_contig18340.4932.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=320bp
DTTCAQGFCFIKYEDQRSTILAVDNCNGIELLGRTLRVDHKHKYSLPAEV
RERAEKLEEERVARGEEPSTKGPQWRPGIAYEGKQFANEHDFHKGVDVFA
APNKGSGSSDEIEPVGAGVSGARGKESAAAKNERREAKRARKEARRESRQ
HKKHKNVGKKKTGESHAEDGLKRKKKKKDKRDDQVGRSHEDGEGGKERGK
APQDDHSDKKRDNRERGPKRNGGGGADAGGVWERGARMPGGEFSGVVYAS
SNAVVNQPAAPASLALGKVLDWRGLGSTGRGRGAGGRSGRGGREGGHGGG
RSGRGGEGVNTIGGMNRRR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR035979	RBD_domain_sf