mRNA_H-elongata_contig183069.4915.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig183069.4915.1
Unique NamemRNA_H-elongata_contig183069.4915.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig183069.4915.1 vs. uniprot
Match: D7G3Q2_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3Q2_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 4.150e-10
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 EARQHLSSDTRTFVNLLISFVGAGILGIPFAFRQ 102
            + R HLSSD RTFVNLLISFVGAG+LGIPFAFRQ
Sbjct:   72 DPRLHLSSDRRTFVNLLISFVGAGVLGIPFAFRQ 105
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BLAST of mRNA_H-elongata_contig183069.4915.1 vs. uniprot
Match: A0A8K1CFQ4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFQ4_PYTOL)

HSP 1 Score: 55.8 bits (133), Expect = 4.480e-8
Identity = 22/34 (64.71%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 EARQHLSSDTRTFVNLLISFVGAGILGIPFAFRQ 102
            + RQHL+SDTRTF N +I+F+G+G+LG+P+AFRQ
Sbjct:  286 DERQHLASDTRTFANTIIAFLGSGVLGLPYAFRQ 319
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BLAST of mRNA_H-elongata_contig183069.4915.1 vs. uniprot
Match: A0A5D6Y5H3_9STRA (Aa_trans domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5H3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.540e-7
Identity = 21/34 (61.76%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 EARQHLSSDTRTFVNLLISFVGAGILGIPFAFRQ 102
            E++ HL+SD RTF N +I+F+G+G+LG+PFAFRQ
Sbjct:   65 ESQPHLTSDARTFANTIIAFLGSGMLGLPFAFRQ 98
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BLAST of mRNA_H-elongata_contig183069.4915.1 vs. uniprot
Match: H6S441_PLAVT (Aminoacid transporter (Fragment) n=1 Tax=Plasmopara viticola TaxID=143451 RepID=H6S441_PLAVT)

HSP 1 Score: 51.6 bits (122), Expect = 9.510e-7
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 EARQHLSSDTRTFVNLLISFVGAGILGIPFAFRQ 102
            EA  HLSSD +TF+N  I+F+G+G+LG+P+AFRQ
Sbjct:   63 EASLHLSSDLKTFINTCIAFLGSGVLGLPYAFRQ 96
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BLAST of mRNA_H-elongata_contig183069.4915.1 vs. uniprot
Match: A0A5D6YTP0_9STRA (Aa_trans domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YTP0_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 4.940e-6
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    4 ARQHLSSDTRTFVNLLISFVGAGILGIPFAFRQ 102
            A  HL+SD RTF + +ISF+GAG+LG PFAF+Q
Sbjct:   36 APHHLASDARTFASAIISFLGAGVLGFPFAFKQ 68
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BLAST of mRNA_H-elongata_contig183069.4915.1 vs. uniprot
Match: K3X1R2_GLOUD (Aa_trans domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1R2_GLOUD)

HSP 1 Score: 49.3 bits (116), Expect = 9.250e-6
Identity = 19/34 (55.88%), Postives = 29/34 (85.29%), Query Frame = 1 
Query:    1 EARQHLSSDTRTFVNLLISFVGAGILGIPFAFRQ 102
            ++ QHL+SD +TF + +ISF+G+G+LG PFAF+Q
Sbjct:   40 DSPQHLASDAKTFASAIISFLGSGVLGFPFAFKQ 73
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BLAST of mRNA_H-elongata_contig183069.4915.1 vs. uniprot
Match: UPI00125DEB0D (amino acid transporter AVT3C-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125DEB0D)

HSP 1 Score: 47.0 bits (110), Expect = 6.060e-5
Identity = 18/32 (56.25%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    7 RQHLSSDTRTFVNLLISFVGAGILGIPFAFRQ 102
            + HLSS T+TF N+ I+ VGAG+LG+P+AF++
Sbjct:   29 QNHLSSQTKTFANIFIAVVGAGVLGLPYAFKR 60
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BLAST of mRNA_H-elongata_contig183069.4915.1 vs. uniprot
Match: UPI00125CFD83 (amino acid transporter AVT3C-like n=2 Tax=Ipomoea TaxID=4119 RepID=UPI00125CFD83)

HSP 1 Score: 46.6 bits (109), Expect = 8.290e-5
Identity = 18/32 (56.25%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    7 RQHLSSDTRTFVNLLISFVGAGILGIPFAFRQ 102
            + HLSS T+TF N+ I+ VGAG+LG+P+ FR+
Sbjct:   30 QHHLSSQTKTFANVFIAIVGAGVLGLPYTFRR 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig183069.4915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G3Q2_ECTSI4.150e-1085.29Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A8K1CFQ4_PYTOL4.480e-864.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y5H3_9STRA7.540e-761.76Aa_trans domain-containing protein n=1 Tax=Pythium... [more]
H6S441_PLAVT9.510e-761.76Aminoacid transporter (Fragment) n=1 Tax=Plasmopar... [more]
A0A5D6YTP0_9STRA4.940e-663.64Aa_trans domain-containing protein n=1 Tax=Pythium... [more]
K3X1R2_GLOUD9.250e-655.88Aa_trans domain-containing protein n=1 Tax=Globisp... [more]
UPI00125DEB0D6.060e-556.25amino acid transporter AVT3C-like n=2 Tax=Ipomoea ... [more]
UPI00125CFD838.290e-556.25amino acid transporter AVT3C-like n=2 Tax=Ipomoea ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig183069contigH-elongata_contig183069:149..250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D7G3Q2
KEGG koko:K10569,ko:K14209
KEGG TC2.A.18.8
KEGG Pathwayko03410,ko04138,map03410,map04138
GOsGO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006810,GO:0006811,GO:0006820,GO:0006865,GO:0008150,GO:0008509,GO:0008514,GO:0009605,GO:0009607,GO:0009624,GO:0012505,GO:0015075,GO:0015171,GO:0015173,GO:0015175,GO:0015318,GO:0015711,GO:0015801,GO:0015804,GO:0015849,GO:0016020,GO:0022857,GO:0031090,GO:0031984,GO:0034220,GO:0042175,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051707,GO:0055085,GO:0071702,GO:0071705,GO:0098588,GO:0098656,GO:0098805,GO:0098827,GO:1903825,GO:1905039
EggNOG free text desc.amino acid transmembrane transporter activity
EggNOG OGsCOG0814@1,KOG1304@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko03400,ko04131
Hectar predicted targeting categorysignal anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930052.0004127-CDS-H-elongata_contig183069:148..2501622930052.0004127-CDS-H-elongata_contig183069:148..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183069 149..250 +
1691679262.0383794-CDS-H-elongata_contig183069:148..2501691679262.0383794-CDS-H-elongata_contig183069:148..250Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig183069 149..250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig183069.4915.1prot_H-elongata_contig183069.4915.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig183069 149..250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig183069.4915.1

>prot_H-elongata_contig183069.4915.1 ID=prot_H-elongata_contig183069.4915.1|Name=mRNA_H-elongata_contig183069.4915.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=34bp
EARQHLSSDTRTFVNLLISFVGAGILGIPFAFRQ
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mRNA from alignment at H-elongata_contig183069:149..250+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig183069.4915.1 ID=mRNA_H-elongata_contig183069.4915.1|Name=mRNA_H-elongata_contig183069.4915.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=102bp|location=Sequence derived from alignment at H-elongata_contig183069:149..250+ (Himanthalia elongata Himel1 dioecious)
GAGGCGAGGCAGCACCTGAGCTCCGACACAAGGACTTTCGTGAACCTCTT
GATTTCATTCGTTGGAGCGGGCATCCTGGGCATACCGTTCGCTTTTCGAC
AG
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Coding sequence (CDS) from alignment at H-elongata_contig183069:149..250+

>mRNA_H-elongata_contig183069.4915.1 ID=mRNA_H-elongata_contig183069.4915.1|Name=mRNA_H-elongata_contig183069.4915.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at H-elongata_contig183069:149..250+ (Himanthalia elongata Himel1 dioecious)
GAGGCGAGGCAGCACCTGAGCTCCGACACAAGGACTTTCGTGAACCTCTT
GATTTCATTCGTTGGAGCGGGCATCCTGGGCATACCGTTCGCTTTTCGAC
AGGAGGCGAGGCAGCACCTGAGCTCCGACACAAGGACTTTCGTGAACCTC
TTGATTTCATTCGTTGGAGCGGGCATCCTGGGCATACCGTTCGCTTTTCG
ACAG
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