mRNA_H-elongata_contig1830.4913.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1830.4913.1
Unique NamemRNA_H-elongata_contig1830.4913.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1830.4913.1 vs. uniprot
Match: D8LFE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE7_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 8.690e-76
Identity = 125/212 (58.96%), Postives = 159/212 (75.00%), Query Frame = 1 
Query:    1 QREEAYNLFQYIDVDEDQRVAAWELARFFPYAIGCTREEKLELSFLCDNIGLKVEEDEEEMIVVAGWEEDSAASRHPSLMVGMRLLSIDGWDLPCALEII----NGTSIGGSLKSSLRECERVLESL-----QIEQTMLHVLEVATPAFVVTKNNRWLDMDIDGDAISVALPLGIYHTRKALFSAVQDAGRDQHPEQLRLFGVKHSSNQPFV 609
            +R+ AY+LF+++DV    R+ AWELARFFP AIGCT +  +E++F C+ +GL VEEDEE M+VVAGWEEDSAA+ HPSLM+GMR+LSIDGWDLPCAL             G+ KSSLR+CE VLE+L     +  +  LHVLEVA PA VVTK+N WLDMD+ G A++V++PLG+Y+T  A F+A+Q+AGRDQHP +LR FGVK    QPFV
Sbjct:   97 ERQRAYSLFEHLDVTCSHRIYAWELARFFPPAIGCTTDNVVEIAFTCNTLGLTVEEDEEGMVVVAGWEEDSAAAEHPSLMIGMRILSIDGWDLPCALTAAASRHGAPGRDGTFKSSLRKCESVLEALSEGDMEDGENALHVLEVAMPAIVVTKSNTWLDMDVSGVAVAVSVPLGVYNTIGAYFTALQEAGRDQHPTELRHFGVKFDPAQPFV 308
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1830.4913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFE7_ECTSI8.690e-7658.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1830contigH-elongata_contig1830:14169..15626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size609
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1830.4913.1prot_H-elongata_contig1830.4913.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1830 14169..15626 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.7866974-CDS-H-elongata_contig1830:14168..143371622930051.7866974-CDS-H-elongata_contig1830:14168..14337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1830 14169..14337 -
1691679261.9931407-CDS-H-elongata_contig1830:14168..143371691679261.9931407-CDS-H-elongata_contig1830:14168..14337Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1830 14169..14337 -
1622930051.809572-CDS-H-elongata_contig1830:14486..146861622930051.809572-CDS-H-elongata_contig1830:14486..14686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1830 14487..14686 -
1691679262.0005512-CDS-H-elongata_contig1830:14486..146861691679262.0005512-CDS-H-elongata_contig1830:14486..14686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1830 14487..14686 -
1622930051.8242633-CDS-H-elongata_contig1830:15068..152151622930051.8242633-CDS-H-elongata_contig1830:15068..15215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1830 15069..15215 -
1691679262.0079963-CDS-H-elongata_contig1830:15068..152151691679262.0079963-CDS-H-elongata_contig1830:15068..15215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1830 15069..15215 -
1622930051.8453038-CDS-H-elongata_contig1830:15533..156261622930051.8453038-CDS-H-elongata_contig1830:15533..15626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1830 15534..15626 -
1691679262.01543-CDS-H-elongata_contig1830:15533..156261691679262.01543-CDS-H-elongata_contig1830:15533..15626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1830 15534..15626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1830.4913.1

>prot_H-elongata_contig1830.4913.1 ID=prot_H-elongata_contig1830.4913.1|Name=mRNA_H-elongata_contig1830.4913.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=203bp
QREEAYNLFQYIDVDEDQRVAAWELARFFPYAIGCTREEKLELSFLCDNI
GLKVEEDEEEMIVVAGWEEDSAASRHPSLMVGMRLLSIDGWDLPCALEII
NGTSIGGSLKSSLRECERVLESLQIEQTMLHVLEVATPAFVVTKNNRWLD
MDIDGDAISVALPLGIYHTRKALFSAVQDAGRDQHPEQLRLFGVKHSSNQ
PFV
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mRNA from alignment at H-elongata_contig1830:14169..15626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1830.4913.1 ID=mRNA_H-elongata_contig1830.4913.1|Name=mRNA_H-elongata_contig1830.4913.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1458bp|location=Sequence derived from alignment at H-elongata_contig1830:14169..15626- (Himanthalia elongata Himel1 dioecious)
CAGCGGGAGGAGGCATACAACTTATTTCAATATATCGATGTCGATGAAGA
TCAAAGGGTTGCTGCATGGGAACTCGCGCGCTTCTTTCCTTATGTGAGAA
AAACGTATGGCTGTTGCCGTGACCCCGTAACATGGTAGGGCGCGAGCCAT
AAAATGTTAGAAACTTGGGTGTTGTAGACGTAAACGCCTCGTGGTTTATT
TCCAATAGCCGAAGCGTTTTTTATTTCCGTTTTCATGACTGCAAATGCAA
CATCAGTGCATAATGGGTGCCGTGGATTATCCTCGACGTTAAGCTATATC
TGCTTGAAGGAAGGAAACTCCAGGTGCCGGCAAGTCAGTGGAAATTTTCC
CGTTAAGTCTAAGCCGTCCAGTTTCGCTTGCCTCGTCGTCCGTGTCGGGC
AACGATGATAGGCGATCGGCTGTACCAGAGAAGAAAAATTGGAGCTGTCG
TTCCTGTGCGATAATATCGGCCTCAAGGTTGAAGAGGACGAGGAGGAAAT
GATCGTCGTCGCAGGATGGGAGGAAGACAGCGCCGCTTCTCGACATCCAT
CGTTGATGGTCAGCAAGGCTTTGGCGTTTTCACTTCATTTGCTACCGTTT
TTCGTTGTGGTAGGCCTACGGTAAGCATTAGCGGCGTTGAAACATATTTT
AGCTCTAGTTTAGCGAGTTAGCGGGAGCTGCCGAAGTTGGATATAATTAC
GATATCATACTATCACACTGTGATATCTACGGCGGGATAAAAACTCCACC
ATCGACCTTTTGAGGGAGGGCTTTGATACGTTTGAGTATTGTATAGACTT
CACAGTAATGTCGATGACGGCGAGTAATCCGTTGAGCACAGATTAAAATT
GAGGTCGATTATTGCGGACACGGAAATATCCACAGCTTCCTATTACGCTC
AAGACTATTCTCGCGGTGTATCTATGAAAACATAAACCAGGTCGGTATGA
GACTGTTGTCAATCGATGGTTGGGACTTACCCTGCGCCTTGGAAATCATT
AATGGTACATCGATTGGTGGTTCTTTGAAATCAAGCTTAAGGGAGTGCGA
GCGAGTACTAGAGTCGTTGCAGATTGAGCAAACGATGTTGCACGTATTGG
AAGTGGCCACTCCCGCCTTCGTGGTCACGAAAAATAATAGGTGAGTACGA
TTTCCTTTCAATGCGTCGTTATCGCCTTGATAGAGTAAATTGTAAACATA
TACATACCTCGTATCTTACCGTGCAGTGAATTGTTTATTCCCACTCTGAC
CGATATATCTTTGTGTGACTCGTTCGTGATCATGATAAGGTGGCTCGACA
TGGACATTGACGGGGACGCCATCTCCGTGGCTTTGCCCCTCGGGATTTAC
CATACCCGGAAAGCGCTTTTCTCTGCCGTGCAAGATGCTGGAAGGGACCA
GCACCCGGAGCAGCTGCGTCTCTTTGGTGTCAAGCACTCATCCAACCAGC
CCTTCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig1830:14169..15626-

>mRNA_H-elongata_contig1830.4913.1 ID=mRNA_H-elongata_contig1830.4913.1|Name=mRNA_H-elongata_contig1830.4913.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1218bp|location=Sequence derived from alignment at H-elongata_contig1830:14169..15626- (Himanthalia elongata Himel1 dioecious)
CAGCGGGAGGAGGCATACAACTTATTTCAATATATCGATGTCGATGAAGA
TCAAAGGGTTGCTGCATGGGAACTCGCGCGCTTCTTTCCTTATCAGCGGG
AGGAGGCATACAACTTATTTCAATATATCGATGTCGATGAAGATCAAAGG
GTTGCTGCATGGGAACTCGCGCGCTTCTTTCCTTATGCGATCGGCTGTAC
CAGAGAAGAAAAATTGGAGCTGTCGTTCCTGTGCGATAATATCGGCCTCA
AGGTTGAAGAGGACGAGGAGGAAATGATCGTCGTCGCAGGATGGGAGGAA
GACAGCGCCGCTTCTCGACATCCATCGTTGATGGCGATCGGCTGTACCAG
AGAAGAAAAATTGGAGCTGTCGTTCCTGTGCGATAATATCGGCCTCAAGG
TTGAAGAGGACGAGGAGGAAATGATCGTCGTCGCAGGATGGGAGGAAGAC
AGCGCCGCTTCTCGACATCCATCGTTGATGGTCGGTATGAGACTGTTGTC
AATCGATGGTTGGGACTTACCCTGCGCCTTGGAAATCATTAATGGTACAT
CGATTGGTGGTTCTTTGAAATCAAGCTTAAGGGAGTGCGAGCGAGTACTA
GAGTCGTTGCAGATTGAGCAAACGATGTTGCACGTATTGGAAGTGGCCAC
TCCCGCCTTCGTGGTCACGAAAAATAATAGGTCGGTATGAGACTGTTGTC
AATCGATGGTTGGGACTTACCCTGCGCCTTGGAAATCATTAATGGTACAT
CGATTGGTGGTTCTTTGAAATCAAGCTTAAGGGAGTGCGAGCGAGTACTA
GAGTCGTTGCAGATTGAGCAAACGATGTTGCACGTATTGGAAGTGGCCAC
TCCCGCCTTCGTGGTCACGAAAAATAATAGGTGGCTCGACATGGACATTG
ACGGGGACGCCATCTCCGTGGCTTTGCCCCTCGGGATTTACCATACCCGG
AAAGCGCTTTTCTCTGCCGTGCAAGATGCTGGAAGGGACCAGCACCCGGA
GCAGCTGCGTCTCTTTGGTGTCAAGCACTCATCCAACCAGCCCTTCGTGG
TGGCTCGACATGGACATTGACGGGGACGCCATCTCCGTGGCTTTGCCCCT
CGGGATTTACCATACCCGGAAAGCGCTTTTCTCTGCCGTGCAAGATGCTG
GAAGGGACCAGCACCCGGAGCAGCTGCGTCTCTTTGGTGTCAAGCACTCA
TCCAACCAGCCCTTCGTG
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