mRNA_H-elongata_contig18298.4912.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: D7G2R6_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_ECTSI) HSP 1 Score: 381 bits (979), Expect = 9.720e-127 Identity = 177/216 (81.94%), Postives = 200/216 (92.59%), Query Frame = 1
Query: 4 QVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRAEYVRAGKEYGQEMPLHDDEDD 651
QVS+ I + A NENQWP+FLLLDW+P + KLQLWR+ TPFL LGPLGLNF LT HF+WTYMS LEKLHYREPHTFVMLLAFGM SL+LLTL+TGGDVN+SYTLGHS++CF+V +WSRKFAGT+VN+LDMF+LPTELLPYFFVAQTLMMEGVIPWVDLSG+LIGYAWQTLSLKGLL+APKPLVNLFRNNAFLRAEY +AGKEYGQ++PLHDD+DD
Sbjct: 140 QVSVAITLAAAALNENQWPTFLLLDWRPAIFKLQLWRLFTPFLNLGPLGLNFALTAHFAWTYMSHLEKLHYREPHTFVMLLAFGMSSLLLLTLVTGGDVNSSYTLGHSMNCFLVMIWSRKFAGTRVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPLHDDDDD 355
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A7S2Y3M2_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3M2_9STRA) HSP 1 Score: 189 bits (479), Expect = 1.080e-53 Identity = 91/203 (44.83%), Postives = 138/203 (67.98%), Query Frame = 1
Query: 10 SMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRAEYVRAGKEYG 618
SM I + F NQWP LL+DW + KLQ+WR++T FLY G GL+++LT HF WTY+ QLEKLH+R+P F ++LAFGM +++ ++LL + + LGH+LSCF+V +W++K+ G VNV+D+F + ELLP+FFVAQTL++ G +P D+ G+ G+ + L+LK + AP+ L +F ++ ++ Y R +EYG
Sbjct: 134 SMSITIGAWAFKNNQWPQLLLMDWDKVLKKLQVWRLVTSFLYFGNFGLDYILTLHFVWTYLGQLEKLHFRKPADFFVMLAFGM-TVLHISLLILKNYLSPNVLGHNLSCFLVYIWAKKYEGNDVNVMDLFHMSAELLPWFFVAQTLVLTGELPIADIIGIAAGHMYHYLNLKKMTSAPEFLQRIFEIDS-IKMRYERYEEEYG 334
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: F0YAW8_AURAN (Derlin n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAW8_AURAN) HSP 1 Score: 177 bits (448), Expect = 2.800e-49 Identity = 90/206 (43.69%), Postives = 132/206 (64.08%), Query Frame = 1
Query: 7 VSMGIAMFCAVFN--ENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRAEYVRAGKEYG 618
V +A+ C F NQWP +L L+W + Q+WR LT FL+ GP GL+++LT HF WTYM LEKL + EP F++++AFG GSL+L L G ++ LGH+LSCF+V +W+R + G +V+V++ F++ ELLP+FF AQT ++E +P DL G+ IG+ + + +L APKPL +LF +N L A Y +E+G
Sbjct: 117 VGASLALTCGSFLAFNNQWPEWLHLNWGAVFKRAQVWRPLTAFLFYGPFGLSYLLTIHFVWTYMGTLEKLSHTEPWEFLVMMAFGAGSLLLGVGLGGMK---THFLGHNLSCFLVYIWARTYEGQEVSVMEFFNIKAELLPWFFAAQTYLLEHELPIHDLLGIAIGHLYTVARQRKILGAPKPLQDLFTSNPALMARYEAMAEEFG 319
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A6V1KE03_HETAK (Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KE03_HETAK) HSP 1 Score: 174 bits (442), Expect = 3.370e-48 Identity = 86/206 (41.75%), Postives = 131/206 (63.59%), Query Frame = 1
Query: 1 IQVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRAEYVRAGKEYG 618
I +S+ I + C + N+NQWP+ L LDW+ Q WR LTPF + GPLG+N++LT F WTYM+ LEK+ +EPH F ++ G +L+ L G D LGH+L+CF+V VWSR G V + D F++ L+P+FF Q ++MEG+IP+ D+ G+LIG+A+ L K LL AP + ++F++ L+++Y+ +E+G
Sbjct: 125 ISLSVFITVVCQITNKNQWPAALQLDWKKATAGFQFWRFLTPFFHFGPLGVNYILTAQFVWTYMNDLEKIGCKEPHDFAIMCVIGGAALIALYGAMGWDPAG---LGHNLACFLVYVWSRVHEGQSVLLFDFFEMKAVLMPWFFALQPMIMEGMIPYPDILGILIGHAYYYLKTKKLLVAPAFIKSIFQH-PILKSKYLVFEEEFG 326
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: W7TX70_9STRA (Derlin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX70_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.700e-43 Identity = 81/193 (41.97%), Postives = 120/193 (62.18%), Query Frame = 1
Query: 1 IQVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAF 579
+ S+ + +FN+NQWP +LLLDW V +LQ+WR T FLY G G N++L+ HF WTYM+ LEKL + P FV ++ FG+ L++ + L G + LGH+LSC++V VWSR F G V+V+ +F LP +LP+FFVAQT+++E +P DL G+ +G+ + S + L++ P L F F
Sbjct: 224 LMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQ---PHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPPAFLRVFFAQKHF 413
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: B7G004_PHATC (Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G004_PHATC) HSP 1 Score: 161 bits (408), Expect = 3.710e-43 Identity = 80/204 (39.22%), Postives = 131/204 (64.22%), Query Frame = 1
Query: 1 IQVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVN--ASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFL----RAEY 594
+ S ++ +FN N++P+ LLLDW+P + KLQ+WR+LT FL GPLGL +++T HF WTYM+ LE+L++ P+ F +++ FG S+V+ G + + LGH+LS F+V +WSR G +VN+ ++F+ E+LP+FF+AQT ++EG +P +D G++ G+ + G+LRAP +V + ++ L R+EY
Sbjct: 132 LSASFAATLYGYLFNRNEFPTVLLLDWKPVLQKLQIWRLLTSFLNFGPLGLGYLMTAHFVWTYMATLERLNHDRPYDFWIMIFFGQLSMVV-----GYPIFKLSPRFLGHNLSTFLVYIWSRYHEGMEVNMFELFNTRAEMLPWFFLAQTFLLEGELPVLDFLGIVFGHIYHHCKTVGILRAPDVVVEWYNGDSSLARRIRSEY 330
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A7S1ZWZ3_TRICV (Derlin n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWZ3_TRICV) HSP 1 Score: 155 bits (392), Expect = 1.420e-40 Identity = 78/204 (38.24%), Postives = 123/204 (60.29%), Query Frame = 1
Query: 1 IQVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYT--------LGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRA 588
+ S+ ++ + N+N++P LLLDW+P + ++QLWR LT FL +GP GL + +T HF WTYMS LE+L++ P+ F +++ FG ++V A YT LGH+LS F+V VWSR G +VN+ ++F E LP+FF+AQT ++EG +P +DL G+ G+ + G++RAP+ LV + + +A
Sbjct: 156 LSASVAATLWGYLLNKNEFPGVLLLDWKPILTRMQLWRPLTAFLNVGPFGLGYAMTGHFVWTYMSTLERLNHDRPYDFWIMILFGCVTMV-----------AGYTFLNISPRFLGHNLSTFLVYVWSRYHEGMEVNMFELFVTRAETLPWFFLAQTFLLEGELPVLDLLGIFFGHIYHHCKTSGIIRAPRALVEWYEKSESSKA 348
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A836CBA0_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA0_9STRA) HSP 1 Score: 153 bits (386), Expect = 1.830e-40 Identity = 81/206 (39.32%), Postives = 127/206 (61.65%), Query Frame = 1
Query: 7 VSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRAEYVRAGKEYGQE 624
VS + + VFN+N WP L L+W VL+ Q+WR+ F G LG+N +++ +F WTYM +LE+++++ P F ML+ FG L++ T L G ++ + LGHS R++ G +VNV DMF L ELLP+FFVAQTL++EG +P +DL G+ +GY + L ++ L++AP+ + F+ A + +Y R +E+G E
Sbjct: 65 VSFALTAYAFVFNKNAWPKLLDLEWDK-VLRGQIWRVAATFFCFGALGMNCIISMYFVWTYMGELERMYFKRPQDFAMLMGFGALCLLVFTSLMG--IHGQF-LGHS----------REYEGVEVNVNDMFSLKAELLPWFFVAQTLVLEGEVPLLDLLGIFVGYLYMQLKIRKLIKAPEFVTQFFKLPAIAK-DYKRFEREFGVE 255
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A7R9VZL8_9STRA (Derlin n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZL8_9STRA) HSP 1 Score: 154 bits (389), Expect = 2.320e-40 Identity = 73/181 (40.33%), Postives = 121/181 (66.85%), Query Frame = 1
Query: 37 VFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVL-LTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNA 576
V N+NQ+P F LL+W+P + +LQ+WR T FL GP GL +++T HF WTYM+ LE+L++ P+ F +++ FG S+V+ T L +++ + LGH+LS F+V VWSR G +VN+ ++F+ ELLP+FF+AQT ++EG +P +DL G+L G+ + ++R P+ + + + ++
Sbjct: 144 VMNKNQFPEFFLLEWKPILTRLQIWRPFTAFLNFGPFGLGYLMTGHFVWTYMATLERLNHDRPYDFWLMIVFGCASMVVGYTFL---NISPRF-LGHNLSTFLVYVWSRYHEGMEVNLFELFNTRAELLPWFFLAQTFLLEGEVPILDLLGILFGHIYHHCKTTNIIRTPRFVTDWYNGDS 320
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A1Z5JIU9_FISSO (Derlin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIU9_FISSO) HSP 1 Score: 154 bits (388), Expect = 2.820e-40 Identity = 78/196 (39.80%), Postives = 120/196 (61.22%), Query Frame = 1
Query: 1 IQVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLV----LLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNA 576
+ S G M+ +FN+N++P L L+W+P + +LQ+WR T FL GP GL ++LT F WTYM+ LE+L++ P F +L+ FG S+V LL L + LGH+LS ++V +WSR G +VN+ +MF+ ELLP+FF+AQT ++EG P +D G++ G+ + G+LRAP LV + ++
Sbjct: 126 LTASFGATMYGYLFNKNEFPRILTLEWKPVLQRLQIWRPFTSFLNFGPFGLGYILTAQFVWTYMATLERLNHNRPFDFWILMLFGQLSMVIGYPLLKL-------SPRFLGHNLSTYLVYIWSRYHEGVEVNMFEMFNTKAELLPWFFLAQTFLLEGEPPVLDFLGIVFGHIYHHCKTVGILRAPDALVAWYHGDS 314 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18298.4912.1 >prot_H-elongata_contig18298.4912.1 ID=prot_H-elongata_contig18298.4912.1|Name=mRNA_H-elongata_contig18298.4912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=346bp MGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVback to top mRNA from alignment at H-elongata_contig18298:4931..7050- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18298.4912.1 ID=mRNA_H-elongata_contig18298.4912.1|Name=mRNA_H-elongata_contig18298.4912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2120bp|location=Sequence derived from alignment at H-elongata_contig18298:4931..7050- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18298:4931..7050- >mRNA_H-elongata_contig18298.4912.1 ID=mRNA_H-elongata_contig18298.4912.1|Name=mRNA_H-elongata_contig18298.4912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2076bp|location=Sequence derived from alignment at H-elongata_contig18298:4931..7050- (Himanthalia elongata Himel1 dioecious)back to top |