mRNA_H-elongata_contig18298.4912.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18298.4912.1
Unique NamemRNA_H-elongata_contig18298.4912.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: D7G2R6_ECTSI (Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_ECTSI)

HSP 1 Score: 381 bits (979), Expect = 9.720e-127
Identity = 177/216 (81.94%), Postives = 200/216 (92.59%), Query Frame = 1
Query:    4 QVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRAEYVRAGKEYGQEMPLHDDEDD 651
            QVS+ I +  A  NENQWP+FLLLDW+P + KLQLWR+ TPFL LGPLGLNF LT HF+WTYMS LEKLHYREPHTFVMLLAFGM SL+LLTL+TGGDVN+SYTLGHS++CF+V +WSRKFAGT+VN+LDMF+LPTELLPYFFVAQTLMMEGVIPWVDLSG+LIGYAWQTLSLKGLL+APKPLVNLFRNNAFLRAEY +AGKEYGQ++PLHDD+DD
Sbjct:  140 QVSVAITLAAAALNENQWPTFLLLDWRPAIFKLQLWRLFTPFLNLGPLGLNFALTAHFAWTYMSHLEKLHYREPHTFVMLLAFGMSSLLLLTLVTGGDVNSSYTLGHSMNCFLVMIWSRKFAGTRVNMLDMFELPTELLPYFFVAQTLMMEGVIPWVDLSGILIGYAWQTLSLKGLLKAPKPLVNLFRNNAFLRAEYAKAGKEYGQDVPLHDDDDD 355          
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A7S2Y3M2_9STRA (Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3M2_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.080e-53
Identity = 91/203 (44.83%), Postives = 138/203 (67.98%), Query Frame = 1
Query:   10 SMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRAEYVRAGKEYG 618
            SM I +    F  NQWP  LL+DW   + KLQ+WR++T FLY G  GL+++LT HF WTY+ QLEKLH+R+P  F ++LAFGM +++ ++LL   +  +   LGH+LSCF+V +W++K+ G  VNV+D+F +  ELLP+FFVAQTL++ G +P  D+ G+  G+ +  L+LK +  AP+ L  +F  ++ ++  Y R  +EYG
Sbjct:  134 SMSITIGAWAFKNNQWPQLLLMDWDKVLKKLQVWRLVTSFLYFGNFGLDYILTLHFVWTYLGQLEKLHFRKPADFFVMLAFGM-TVLHISLLILKNYLSPNVLGHNLSCFLVYIWAKKYEGNDVNVMDLFHMSAELLPWFFVAQTLVLTGELPIADIIGIAAGHMYHYLNLKKMTSAPEFLQRIFEIDS-IKMRYERYEEEYG 334          
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: F0YAW8_AURAN (Derlin n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAW8_AURAN)

HSP 1 Score: 177 bits (448), Expect = 2.800e-49
Identity = 90/206 (43.69%), Postives = 132/206 (64.08%), Query Frame = 1
Query:    7 VSMGIAMFCAVFN--ENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRAEYVRAGKEYG 618
            V   +A+ C  F    NQWP +L L+W     + Q+WR LT FL+ GP GL+++LT HF WTYM  LEKL + EP  F++++AFG GSL+L   L G     ++ LGH+LSCF+V +W+R + G +V+V++ F++  ELLP+FF AQT ++E  +P  DL G+ IG+ +     + +L APKPL +LF +N  L A Y    +E+G
Sbjct:  117 VGASLALTCGSFLAFNNQWPEWLHLNWGAVFKRAQVWRPLTAFLFYGPFGLSYLLTIHFVWTYMGTLEKLSHTEPWEFLVMMAFGAGSLLLGVGLGGMK---THFLGHNLSCFLVYIWARTYEGQEVSVMEFFNIKAELLPWFFAAQTYLLEHELPIHDLLGIAIGHLYTVARQRKILGAPKPLQDLFTSNPALMARYEAMAEEFG 319          
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A6V1KE03_HETAK (Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KE03_HETAK)

HSP 1 Score: 174 bits (442), Expect = 3.370e-48
Identity = 86/206 (41.75%), Postives = 131/206 (63.59%), Query Frame = 1
Query:    1 IQVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRAEYVRAGKEYG 618
            I +S+ I + C + N+NQWP+ L LDW+      Q WR LTPF + GPLG+N++LT  F WTYM+ LEK+  +EPH F ++   G  +L+ L    G D      LGH+L+CF+V VWSR   G  V + D F++   L+P+FF  Q ++MEG+IP+ D+ G+LIG+A+  L  K LL AP  + ++F++   L+++Y+   +E+G
Sbjct:  125 ISLSVFITVVCQITNKNQWPAALQLDWKKATAGFQFWRFLTPFFHFGPLGVNYILTAQFVWTYMNDLEKIGCKEPHDFAIMCVIGGAALIALYGAMGWDPAG---LGHNLACFLVYVWSRVHEGQSVLLFDFFEMKAVLMPWFFALQPMIMEGMIPYPDILGILIGHAYYYLKTKKLLVAPAFIKSIFQH-PILKSKYLVFEEEFG 326          
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: W7TX70_9STRA (Derlin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX70_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.700e-43
Identity = 81/193 (41.97%), Postives = 120/193 (62.18%), Query Frame = 1
Query:    1 IQVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAF 579
            +  S+ +     +FN+NQWP +LLLDW   V +LQ+WR  T FLY G  G N++L+ HF WTYM+ LEKL  + P  FV ++ FG+  L++ + L G      + LGH+LSC++V VWSR F G  V+V+ +F LP  +LP+FFVAQT+++E  +P  DL G+ +G+ +   S + L++ P  L   F    F
Sbjct:  224 LMASLSVTTAAMLFNKNQWPEWLLLDWAKVVGRLQIWRPFTSFLYFGSFGFNYLLSAHFMWTYMAHLEKLKCKNPADFVTMVLFGVSFLLVGSPLMGFQ---PHFLGHNLSCYLVYVWSRMFEGQDVDVMGLFHLPAHVLPWFFVAQTVVLEQELPLSDLLGIAVGHLYHYASTRKLVKPPAFLRVFFAQKHF 413          
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: B7G004_PHATC (Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G004_PHATC)

HSP 1 Score: 161 bits (408), Expect = 3.710e-43
Identity = 80/204 (39.22%), Postives = 131/204 (64.22%), Query Frame = 1
Query:    1 IQVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVN--ASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFL----RAEY 594
            +  S    ++  +FN N++P+ LLLDW+P + KLQ+WR+LT FL  GPLGL +++T HF WTYM+ LE+L++  P+ F +++ FG  S+V+     G  +   +   LGH+LS F+V +WSR   G +VN+ ++F+   E+LP+FF+AQT ++EG +P +D  G++ G+ +      G+LRAP  +V  +  ++ L    R+EY
Sbjct:  132 LSASFAATLYGYLFNRNEFPTVLLLDWKPVLQKLQIWRLLTSFLNFGPLGLGYLMTAHFVWTYMATLERLNHDRPYDFWIMIFFGQLSMVV-----GYPIFKLSPRFLGHNLSTFLVYIWSRYHEGMEVNMFELFNTRAEMLPWFFLAQTFLLEGELPVLDFLGIVFGHIYHHCKTVGILRAPDVVVEWYNGDSSLARRIRSEY 330          
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A7S1ZWZ3_TRICV (Derlin n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZWZ3_TRICV)

HSP 1 Score: 155 bits (392), Expect = 1.420e-40
Identity = 78/204 (38.24%), Postives = 123/204 (60.29%), Query Frame = 1
Query:    1 IQVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYT--------LGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRA 588
            +  S+   ++  + N+N++P  LLLDW+P + ++QLWR LT FL +GP GL + +T HF WTYMS LE+L++  P+ F +++ FG  ++V           A YT        LGH+LS F+V VWSR   G +VN+ ++F    E LP+FF+AQT ++EG +P +DL G+  G+ +      G++RAP+ LV  +  +   +A
Sbjct:  156 LSASVAATLWGYLLNKNEFPGVLLLDWKPILTRMQLWRPLTAFLNVGPFGLGYAMTGHFVWTYMSTLERLNHDRPYDFWIMILFGCVTMV-----------AGYTFLNISPRFLGHNLSTFLVYVWSRYHEGMEVNMFELFVTRAETLPWFFLAQTFLLEGELPVLDLLGIFFGHIYHHCKTSGIIRAPRALVEWYEKSESSKA 348          
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A836CBA0_9STRA (Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBA0_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.830e-40
Identity = 81/206 (39.32%), Postives = 127/206 (61.65%), Query Frame = 1
Query:    7 VSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRAEYVRAGKEYGQE 624
            VS  +  +  VFN+N WP  L L+W   VL+ Q+WR+   F   G LG+N +++ +F WTYM +LE+++++ P  F ML+ FG   L++ T L G  ++  + LGHS          R++ G +VNV DMF L  ELLP+FFVAQTL++EG +P +DL G+ +GY +  L ++ L++AP+ +   F+  A  + +Y R  +E+G E
Sbjct:   65 VSFALTAYAFVFNKNAWPKLLDLEWDK-VLRGQIWRVAATFFCFGALGMNCIISMYFVWTYMGELERMYFKRPQDFAMLMGFGALCLLVFTSLMG--IHGQF-LGHS----------REYEGVEVNVNDMFSLKAELLPWFFVAQTLVLEGEVPLLDLLGIFVGYLYMQLKIRKLIKAPEFVTQFFKLPAIAK-DYKRFEREFGVE 255          
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A7R9VZL8_9STRA (Derlin n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZL8_9STRA)

HSP 1 Score: 154 bits (389), Expect = 2.320e-40
Identity = 73/181 (40.33%), Postives = 121/181 (66.85%), Query Frame = 1
Query:   37 VFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVL-LTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNA 576
            V N+NQ+P F LL+W+P + +LQ+WR  T FL  GP GL +++T HF WTYM+ LE+L++  P+ F +++ FG  S+V+  T L   +++  + LGH+LS F+V VWSR   G +VN+ ++F+   ELLP+FF+AQT ++EG +P +DL G+L G+ +       ++R P+ + + +  ++
Sbjct:  144 VMNKNQFPEFFLLEWKPILTRLQIWRPFTAFLNFGPFGLGYLMTGHFVWTYMATLERLNHDRPYDFWLMIVFGCASMVVGYTFL---NISPRF-LGHNLSTFLVYVWSRYHEGMEVNLFELFNTRAELLPWFFLAQTFLLEGEVPILDLLGILFGHIYHHCKTTNIIRTPRFVTDWYNGDS 320          
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Match: A0A1Z5JIU9_FISSO (Derlin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIU9_FISSO)

HSP 1 Score: 154 bits (388), Expect = 2.820e-40
Identity = 78/196 (39.80%), Postives = 120/196 (61.22%), Query Frame = 1
Query:    1 IQVSMGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFVLTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLV----LLTLLTGGDVNASYTLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGVIPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNA 576
            +  S G  M+  +FN+N++P  L L+W+P + +LQ+WR  T FL  GP GL ++LT  F WTYM+ LE+L++  P  F +L+ FG  S+V    LL L       +   LGH+LS ++V +WSR   G +VN+ +MF+   ELLP+FF+AQT ++EG  P +D  G++ G+ +      G+LRAP  LV  +  ++
Sbjct:  126 LTASFGATMYGYLFNKNEFPRILTLEWKPVLQRLQIWRPFTSFLNFGPFGLGYILTAQFVWTYMATLERLNHNRPFDFWILMLFGQLSMVIGYPLLKL-------SPRFLGHNLSTYLVYIWSRYHEGVEVNMFEMFNTKAELLPWFFLAQTFLLEGEPPVLDFLGIVFGHIYHHCKTVGILRAPDALVAWYHGDS 314          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18298.4912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R6_ECTSI9.720e-12781.94Derlin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R6_... [more]
A0A7S2Y3M2_9STRA1.080e-5344.83Derlin n=1 Tax=Fibrocapsa japonica TaxID=94617 Rep... [more]
F0YAW8_AURAN2.800e-4943.69Derlin n=1 Tax=Aureococcus anophagefferens TaxID=4... [more]
A0A6V1KE03_HETAK3.370e-4841.75Derlin n=1 Tax=Heterosigma akashiwo TaxID=2829 Rep... [more]
W7TX70_9STRA1.700e-4341.97Derlin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=... [more]
B7G004_PHATC3.710e-4339.22Derlin n=2 Tax=Phaeodactylum tricornutum TaxID=285... [more]
A0A7S1ZWZ3_TRICV1.420e-4038.24Derlin n=1 Tax=Trieres chinensis TaxID=1514140 Rep... [more]
A0A836CBA0_9STRA1.830e-4039.32Derlin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7R9VZL8_9STRA2.320e-4040.33Derlin n=1 Tax=Pseudictyota dubia TaxID=2749911 Re... [more]
A0A1Z5JIU9_FISSO2.820e-4039.80Derlin n=2 Tax=Fistulifera solaris TaxID=1519565 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18298contigH-elongata_contig18298:4931..7050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score375.9
Seed ortholog evalue2e-101
Seed eggNOG ortholog2880.D7G2R6
KEGG koko:K13989
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
EggNOG free text desc.ubiquitin-dependent ERAD pathway
EggNOG OGsCOG5291@1,KOG0858@2759
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionDerlin (Degradation in endoplasmic reticulum protein ) (Der1-like protein)
Ec32 orthologEc-11_003230.1
Exons4
Model size1050
Cds size1038
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18298.4912.1prot_H-elongata_contig18298.4912.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18298 4931..7038 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.651144-CDS-H-elongata_contig18298:4930..54701622930051.651144-CDS-H-elongata_contig18298:4930..5470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 4931..5470 -
1691679261.954305-CDS-H-elongata_contig18298:4930..54701691679261.954305-CDS-H-elongata_contig18298:4930..5470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 4931..5470 -
1622930051.6671045-CDS-H-elongata_contig18298:5602..57341622930051.6671045-CDS-H-elongata_contig18298:5602..5734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 5603..5734 -
1691679261.9633412-CDS-H-elongata_contig18298:5602..57341691679261.9633412-CDS-H-elongata_contig18298:5602..5734Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 5603..5734 -
1622930051.6830935-CDS-H-elongata_contig18298:6455..65701622930051.6830935-CDS-H-elongata_contig18298:6455..6570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 6456..6570 -
1691679261.9709063-CDS-H-elongata_contig18298:6455..65701691679261.9709063-CDS-H-elongata_contig18298:6455..6570Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 6456..6570 -
1622930051.7002008-CDS-H-elongata_contig18298:6787..70381622930051.7002008-CDS-H-elongata_contig18298:6787..7038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 6788..7038 -
1691679261.9784634-CDS-H-elongata_contig18298:6787..70381691679261.9784634-CDS-H-elongata_contig18298:6787..7038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 6788..7038 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.7171617-UTR-H-elongata_contig18298:7038..70501622930051.7171617-UTR-H-elongata_contig18298:7038..7050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18298 7039..7050 -
1691679261.9856808-UTR-H-elongata_contig18298:7038..70501691679261.9856808-UTR-H-elongata_contig18298:7038..7050Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18298 7039..7050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18298.4912.1

>prot_H-elongata_contig18298.4912.1 ID=prot_H-elongata_contig18298.4912.1|Name=mRNA_H-elongata_contig18298.4912.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=346bp
MGIAMFCAVFNENQWPSFLLLDWQPTVLKLQLWRMLTPFLYLGPLGLNFV
LTTHFSWTYMSQLEKLHYREPHTFVMLLAFGMGSLVLLTLLTGGDVNASY
TLGHSLSCFMVTVWSRKFAGTKVNVLDMFDLPTELLPYFFVAQTLMMEGV
IPWVDLSGLLIGYAWQTLSLKGLLRAPKPLVNLFRNNAFLRAEYVRAGKE
YGQEMPLHDDEDDDVVPSAQVLERDEEGRAPFGDGEEQVADKGHTVDVRA
TRRALGRRGAVTEQRGSEAEEEEEEEGPESSDSVGARGDSEYAGVEIGGS
LFGDEDDLEGLGEVDEEMEMVLDEFGDLFDGDDDLEESLDEDAED*
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mRNA from alignment at H-elongata_contig18298:4931..7050-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18298.4912.1 ID=mRNA_H-elongata_contig18298.4912.1|Name=mRNA_H-elongata_contig18298.4912.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2120bp|location=Sequence derived from alignment at H-elongata_contig18298:4931..7050- (Himanthalia elongata Himel1 dioecious)
ATACAGGTGAGCATGGGCATCGCAATGTTCTGCGCCGTTTTCAACGAGAA TCAGTGGCCGAGTTTCCTTCTCCTGGACTGGCAACCAACCGTTCTCAAGC TGCAGCTCTGGCGGATGTTGACGCCCTTCCTGTACTTGGGCCCGCTTGGC CTGAACTTCGTGCTGACGACCCACTTCTCGTGGACATACATGAGCCAGCT GGAGAAGCTGCACTATCGGGAGCCGCACACCTTTGTCATGCTCCTCGCGT TTGGCATGGGCAGGTTTGAGCGACGCGGATTGTTTGTCCAAGGGACGCGC GTTCGCGGCGGTGCACGGCGTGATGTTTGTAGCGTGCCGTGATAGAGCTG CGTTCTGGGTCTGTTCGTTAAGGAAGGAGAGTGAGTCGTGGATATCTTCA AGGGCCAATCGTGACGGCAGTTTACTTTCTTTATCGCCGTCTGTCGTGTG TTCGACCCTCCCCTCCTACACCTATAACAGCCTGGTTCTACTCACTCTTC TCACGGGTGGAGATGTTAATGCCAGCTACACGCTAGGCCACAGCCTGAGC TGCTTCATGGTGACCGTCTGGAGTCGAAAGTTTGCCGGCACGAAGGTCAG AACGAAATGTACCTAGTAACTGTTACCCAAGTCATTCACTCACATACTAC ATGTAGGATAGAATTAGTATATATATATACATATTTTCTTTGGAGATCGC TTTTTCAGAGTATTTTGCACTAATATTGCCGTTTTCTTTTGAAGGTTGGG GGTTTTTCTGCCTTGTGACCACGGGCTGGATTTTGTTATCAGATTATGTG ATAATTCAATCAATCAATCAAGGGCCGGATTGCGCGTATATATGCCCAGG GGCGGGATCGGGGAGGGGGAGGAGGGGCGAAGAAGCATAAGAAGGTGGAA AACGGGGGAGATTTGGGTTGCAGTAGTAAAAAAAGGTAGATGAGAGAACG TTGGTTCAATAGGGGCCGACCGAAGCTATATAGTGATCAAGGAATATGAA AAGGAAGCGCAAGGTGTTGAAGGCTTATATACTAAATGTAGAGAGTATGC CTCCTTTGTCACCTCAGATCATATTTTTTTGTAGCAAATATGATAGATCC CTCATTGGGAAGATAGATCAATGCGTGTAGCCTAGAATGACTAGCCTGAC AGGGCTTGATCGCGCTGTTATGTGCAATTTAATAAATACACATAATACAA ACAGACGCTTACACATACTTGAGCACCTCCTGTTAGATATAGCTGCTGCG CAAGCGTTGCTGAATGTGTCCTCGGTTCGTAAGAATACCGTTCTTAATCT TTCCCATGGTTACAAGGTGAATGTTCTGGACATGTTCGACCTTCCTACCG AGCTGCTCCCTTACTTCTTCGTGGCGCAGACCCTCATGATGGAGGGCGTC ATTCCATGGGTGGATCTCAGCGGACTGCTGATTGGCTATGCCTGGCAGGT AAGACTGCTGAGTGGCTATGCGTGGCAGTGAAAACTGCTGATTGGCTCTT CCCGAAGACGAATATGTCATCGTAGATTGATTTCAGAAGAGTGATAAAAA ACGCAATCTCTCTGCTGCCCCTGCTTACAGACTCTATCGCTGAAGGGACT CCTGCGGGCTCCGAAGCCCCTGGTGAACCTCTTCCGCAACAACGCCTTCC TGCGGGCGGAGTACGTCCGCGCTGGCAAAGAGTACGGGCAAGAGATGCCG CTACATGATGACGAGGATGACGACGTCGTGCCGTCGGCCCAAGTTTTGGA ACGGGATGAAGAGGGCCGGGCGCCCTTTGGGGATGGAGAGGAGCAGGTTG CCGATAAGGGACATACGGTCGACGTTCGTGCGACCAGGAGGGCGTTGGGG AGAAGGGGGGCGGTCACGGAGCAGCGAGGGAGCGAGGCAGAAGAAGAGGA GGAGGAAGAGGGGCCAGAGAGTAGCGACAGCGTCGGAGCACGTGGAGATA GTGAATATGCCGGGGTGGAGATAGGAGGGTCCTTGTTCGGAGACGAGGAC GACCTGGAGGGATTGGGGGAAGTTGACGAGGAGATGGAGATGGTGTTGGA TGAATTCGGAGACTTGTTTGACGGTGACGACGATCTCGAGGAGTCCCTGG ATGAAGACGCTGAGGACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig18298:4931..7050-

>mRNA_H-elongata_contig18298.4912.1 ID=mRNA_H-elongata_contig18298.4912.1|Name=mRNA_H-elongata_contig18298.4912.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2076bp|location=Sequence derived from alignment at H-elongata_contig18298:4931..7050- (Himanthalia elongata Himel1 dioecious)
ATGGGCATCGCAATGTTCTGCGCCGTTTTCAACGAGAATCAGTGGCCGAG
TTTCCTTCTCCTGGACTGGCAACCAACCGTTCTCAAGCTGCAGCTCTGGC
GGATGTTGACGCCCTTCCTGTACTTGGGCCCGCTTGGCCTGAACTTCGTG
CTGACGACCCACTTCTCGTGGACATACATGAGCCAGCTGGAGAAGCTGCA
CTATCGGGAGCCGCACACCTTTGTCATGCTCCTCGCGTTTGGCATGGGCA
GATGGGCATCGCAATGTTCTGCGCCGTTTTCAACGAGAATCAGTGGCCGA
GTTTCCTTCTCCTGGACTGGCAACCAACCGTTCTCAAGCTGCAGCTCTGG
CGGATGTTGACGCCCTTCCTGTACTTGGGCCCGCTTGGCCTGAACTTCGT
GCTGACGACCCACTTCTCGTGGACATACATGAGCCAGCTGGAGAAGCTGC
ACTATCGGGAGCCGCACACCTTTGTCATGCTCCTCGCGTTTGGCATGGGC
AGCCTGGTTCTACTCACTCTTCTCACGGGTGGAGATGTTAATGCCAGCTA
CACGCTAGGCCACAGCCTGAGCTGCTTCATGGTGACCGTCTGGAGTCGAA
AGTTTGCCGGCACGAAGCCTGGTTCTACTCACTCTTCTCACGGGTGGAGA
TGTTAATGCCAGCTACACGCTAGGCCACAGCCTGAGCTGCTTCATGGTGA
CCGTCTGGAGTCGAAAGTTTGCCGGCACGAAGGTGAATGTTCTGGACATG
TTCGACCTTCCTACCGAGCTGCTCCCTTACTTCTTCGTGGCGCAGACCCT
CATGATGGAGGGCGTCATTCCATGGGTGGATCTCAGCGGACTGCTGATTG
GCTATGCCTGGCAGGTGAATGTTCTGGACATGTTCGACCTTCCTACCGAG
CTGCTCCCTTACTTCTTCGTGGCGCAGACCCTCATGATGGAGGGCGTCAT
TCCATGGGTGGATCTCAGCGGACTGCTGATTGGCTATGCCTGGCAGACTC
TATCGCTGAAGGGACTCCTGCGGGCTCCGAAGCCCCTGGTGAACCTCTTC
CGCAACAACGCCTTCCTGCGGGCGGAGTACGTCCGCGCTGGCAAAGAGTA
CGGGCAAGAGATGCCGCTACATGATGACGAGGATGACGACGTCGTGCCGT
CGGCCCAAGTTTTGGAACGGGATGAAGAGGGCCGGGCGCCCTTTGGGGAT
GGAGAGGAGCAGGTTGCCGATAAGGGACATACGGTCGACGTTCGTGCGAC
CAGGAGGGCGTTGGGGAGAAGGGGGGCGGTCACGGAGCAGCGAGGGAGCG
AGGCAGAAGAAGAGGAGGAGGAAGAGGGGCCAGAGAGTAGCGACAGCGTC
GGAGCACGTGGAGATAGTGAATATGCCGGGGTGGAGATAGGAGGGTCCTT
GTTCGGAGACGAGGACGACCTGGAGGGATTGGGGGAAGTTGACGAGGAGA
TGGAGATGGTGTTGGATGAATTCGGAGACTTGTTTGACGGTGACGACGAT
CTCGAGGAGTCCCTGGATGAAGACGCTGAGGACTAAACTCTATCGCTGAA
GGGACTCCTGCGGGCTCCGAAGCCCCTGGTGAACCTCTTCCGCAACAACG
CCTTCCTGCGGGCGGAGTACGTCCGCGCTGGCAAAGAGTACGGGCAAGAG
ATGCCGCTACATGATGACGAGGATGACGACGTCGTGCCGTCGGCCCAAGT
TTTGGAACGGGATGAAGAGGGCCGGGCGCCCTTTGGGGATGGAGAGGAGC
AGGTTGCCGATAAGGGACATACGGTCGACGTTCGTGCGACCAGGAGGGCG
TTGGGGAGAAGGGGGGCGGTCACGGAGCAGCGAGGGAGCGAGGCAGAAGA
AGAGGAGGAGGAAGAGGGGCCAGAGAGTAGCGACAGCGTCGGAGCACGTG
GAGATAGTGAATATGCCGGGGTGGAGATAGGAGGGTCCTTGTTCGGAGAC
GAGGACGACCTGGAGGGATTGGGGGAAGTTGACGAGGAGATGGAGATGGT
GTTGGATGAATTCGGAGACTTGTTTGACGGTGACGACGATCTCGAGGAGT
CCCTGGATGAAGACGCTGAGGACTAA
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