mRNA_H-elongata_contig18298.4911.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18298.4911.1
Unique NamemRNA_H-elongata_contig18298.4911.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18298.4911.1 vs. uniprot
Match: D7G2R5_ECTSI (DUF2040 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R5_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 4.600e-106
Identity = 203/331 (61.33%), Postives = 233/331 (70.39%), Query Frame = 1 
Query:  133 MRKSGLKFGLIGSASSLKK-------EGGKARPIGSKPLPRRRPAGATAVFDADSDEEPQD---DPRGVAAVNKRLAAISAKQERQAKKEFENALQADPSVFDYDVAYDGMKQSQVSKAAAATVAREKEKRLPKYIGNLLKQAKVRALESDRIFERKLQKEREEQDKVEGEATMKFVTSAYKKKLVEQRKWELQQRLDDEREQRRDVSNKGMSGFYSSLITKNIAMGXXXXXXXXXXXXXXXSNRKEATDDGELHRGNSKTRTGHKRTIDD---------------KEGGNGSTDSADRDGS--NMDGDTAPTARMVDPRAATAAKAKGDK 1044
            MRKSG+KFGLIG+ASSLKK         G+ RPIGSKP PRRRPAG+T+VFDA+SD+E +D   D  GV AVNKRLAAISAKQE+QAKKE+E+ALQADPSVFDYD  YDGMK+S+ SK AAATVAREKEKR PKYIGNLLKQAK+RA+ESDRIF+RKLQKERE QDK+EGEATMKFVTSAYKKKL+EQ+KWELQQ+L+DEREQR DV+  GM GFYS+LITKNIAMG               S R  ATD+ E+  GN +                           +GG    D  D D S    D    PTARMVDPRA    K++ D+
Sbjct:    1 MRKSGVKFGLIGTASSLKKGSSSAAGAAGRGRPIGSKPAPRRRPAGSTSVFDANSDDEEEDSKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMKESRESKVAAATVAREKEKRQPKYIGNLLKQAKMRAVESDRIFDRKLQKEREAQDKLEGEATMKFVTSAYKKKLMEQKKWELQQQLEDEREQRNDVTKTGMGGFYSNLITKNIAMGGDVEKSANSAFTAG-SKRHAATDEYEMQDGNEQAXXXXXXXXXXXXXXXXXEGGPANGASQGGREGRDGGDADSSPGRTDESGGPTARMVDPRAGEQKKSRRDE 330
[Close]
BLAST of mRNA_H-elongata_contig18298.4911.1 vs. uniprot
Match: A0A835YZI8_9STRA (Coiled-coil domain-containing protein 55-domain containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI8_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.630e-46
Identity = 112/222 (50.45%), Postives = 149/222 (67.12%), Query Frame = 1 
Query:  151 KFGLIGSASSLKKEGGKARPIGSKPLPRRRPAG--ATAVFDADSDEEP---QDDPRGVAAVNKRLAAISAKQERQAKKEFENALQADPSVFDYDVAYDGMKQSQVSKAAAATVAR--EKEKRL-PKYIGNLLKQAKVRALESDRIFERKLQKEREEQDKVEGEATMKFVTSAYKKKLVEQRKWELQQRLDDEREQRRDVSNK---GMSGFYSSLITKNIAMG 783
            ++GL+G+A +LK +   A+   +   PR+ PA   A A F  DSD +     +DP   AAVN+RLAA  A++ R+ +K    A+  DPSVFDYD  YD + + +  KAAAA  AR  +K KRL P+YIGNLL+QAK+R +E DR+++RKL KEREE DK  G A MKFVTSAYK KL+EQ+KWE+ Q  + ERE + +   K   GM+ FYS+L+TKNIAMG
Sbjct:    3 RYGLLGNAKTLKAQSVAAK---TAKAPRKAPARGPAVAAFGDDSDSDGGAGAEDPTSRAAVNRRLAAEQAERARRMEKVAVQAVMDDPSVFDYDGVYDEVSKGRDDKAAAAAAARGNDKTKRLQPRYIGNLLEQAKLRTVEQDRVYDRKLAKEREEGDKEFGAAEMKFVTSAYKAKLMEQKKWEVAQEREAEREAQAEADMKRGGGMTAFYSNLLTKNIAMG 221
[Close]
BLAST of mRNA_H-elongata_contig18298.4911.1 vs. uniprot
Match: A0A7S3HBP6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBP6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 5.280e-26
Identity = 84/213 (39.44%), Postives = 119/213 (55.87%), Query Frame = 1 
Query:  148 LKFGLIGSASSLKKEGGKARPIGSKPLPRRRPAGATAVFDAD-SDEEPQDDPRGVAAVNKRLAAISAKQERQAKKEFENALQADPSVFDYDVAYDGMKQSQVSKAAAATVAREKEKRLPKYIGNLLKQAKVRALESDRIFERKLQKEREEQDKVEGEATMKFVTSAYKKKLVEQRKWELQQRLDDEREQRRDVSNKGMSGFYSSLITKNIAMG 783
            +K+GLI    +       A P   KP          ++FD D SDE+       V+ VN +LA  +A  E+        A  A+P ++DYD AYD  K  + +K   +     K+    +Y+ NLL  +K+R  E +R+FE+ L KER+ +D   G+   KFVT+AYKKKL+E +KWE + RL DE EQR DV   GM GFY++L+TKN+AMG
Sbjct:   10 VKYGLISKKPA-------APPAQIKPR--------LSMFDRDDSDEDSSAVSNDVSRVNAQLARRNAILEQTMSA----AASAEPDIYDYDGAYDSFKAKEQAKHQLSQPIATKDAPKARYVNNLLATSKMREKEKERVFEKNLLKERKVEDAEFGDKD-KFVTAAYKKKLLEDKKWEYEDRLADEVEQRTDVRKSGMEGFYANLLTKNVAMG 202
[Close]
BLAST of mRNA_H-elongata_contig18298.4911.1 vs. uniprot
Match: A0A7S1XVS8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVS8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.430e-25
Identity = 71/136 (52.21%), Postives = 94/136 (69.12%), Query Frame = 1 
Query:  382 ALQADPSVFDYDVAYDGMKQSQVSKAAAATVAREKEKRLPKYIGNLLKQAKVRALESDRIFERKLQKEREEQDKVEG--EATMKFVTSAYKKKLVEQRKWELQQRLDDEREQRRDVSNKGMSGFYSSLITKNIAMG 783
            AL  D SVFDYD  YD M  ++ S  AAA  A E+++R  KY  NLLKQA++R L+SDRI+ERKL++E  E  ++ G  +   KFV +AY+K+L E+  WE  +R + ERE R DV+  GM GFYS+L+TKNIAMG
Sbjct:    4 ALTEDASVFDYDGVYDSMTSARDS--AAAAQASERKERKSKYTENLLKQAQMRKLQSDRIYERKLRREAAEVAEMHGGVKDEDKFVGAAYRKQLEEREAWEKAEREEAEREARNDVTKTGMMGFYSNLLTKNIAMG 137
[Close]
BLAST of mRNA_H-elongata_contig18298.4911.1 vs. uniprot
Match: A0A8K1FKC2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKC2_PYTOL)

HSP 1 Score: 112 bits (280), Expect = 3.560e-24
Identity = 91/235 (38.72%), Postives = 132/235 (56.17%), Query Frame = 1 
Query:  112 RLPPSYIMRKSGLKFGLIGSASSLKKEGGKARPIGSKPLPRRRPAGATAVFDADSDE------EPQDDPRGVAAVNKRLAAISAKQERQAKKE--FENALQADPSVFDYDVAYDGMKQSQVSKAAAATVAREKEKRLPKYIGNLLKQAKVRALESDRIFERKLQKEREEQDKVEGEATMKFVTSAYKKKLVEQRKWELQQRLDDEREQRRDVSNKG---MSGFYSSLITKNIAMG 783
            +LP +     SG ++GLI S     K+GGK   +        +PA     FD D++E      + Q DPR      +R+   +A+  +QA  +   E AL  DPSVFDYD  YD ++ S+  K +     RE EK   KYIG L+++AKVR +E DR+ ER+L KERE  D   G+   K ++++YK+KL E ++W+ +    D +E   DV+ +G   M GFYS+L+TKNIAMG
Sbjct:    6 KLPATKGNGSSGKQYGLIVS----NKKGGKKELL--------KPASVFGGFD-DANEATTTPGDAQMDPR------RRVVHEAARSVQQALVDRLHEKALAEDPSVFDYDGVYDEIQSSRQDKVSRRKAQRETEKAQSKYIGTLMEKAKVREIELDRVRERRLLKEREADDAQYGDKE-KLISASYKRKLQEMKRWDEEDARLDAKEAAEDVTKRGNEAMVGFYSNLLTKNIAMG 220
[Close]
BLAST of mRNA_H-elongata_contig18298.4911.1 vs. uniprot
Match: A0A1V9ZKX0_9STRA (DUF2040 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKX0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.450e-23
Identity = 68/145 (46.90%), Postives = 99/145 (68.28%), Query Frame = 1 
Query:  358 QAKKEFENALQADPSVFDYDVAYDGMKQSQVSKAAAATVAREKEKRLPKYIGNLLKQAKVRALESDRIFERKLQKEREEQDKVEGEATMKFVTSAYKKKLVEQRKWELQQRLDDEREQRRDVSNKG---MSGFYSSLITKNIAMG 783
            +A++  + AL +DP+VFDYD  YD M+  +V + AA  V    +    KYI  LL++AK+R +E DRI ER+L KEREE DK+ G+ T KF+TS+YK+KL+E ++WE +     E E  +DV+ +G   M+GFY++L+T NIAMG
Sbjct:   59 KAERAVQEALASDPNVFDYDGVYDSMQAERVKQKAAKKVEGVPQS---KYINVLLEKAKIREIEHDRIRERRLLKEREEDDKLHGD-TEKFITSSYKRKLMEAKRWEEEDARLAEIEAAQDVTKRGELGMAGFYANLLTNNIAMG 199
[Close]
BLAST of mRNA_H-elongata_contig18298.4911.1 vs. uniprot
Match: A0A7S4E5L4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E5L4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.190e-23
Identity = 68/158 (43.04%), Postives = 98/158 (62.03%), Query Frame = 1 
Query:  316 VNKRLAAISAKQERQAKKEFENALQADPSVFDYDVAYDGMKQSQVSKAAAATVAREKEKRLP--KYIGNLLKQAKVRALESDRIFERKLQKEREEQDKVEGEATMKFVTSAYKKKLVEQRKWELQQRLDDEREQRRDVSNKGMSGFYSSLITKNIAMG 783
            V +++  + A Q ++A  +   A   DPS++DYD  YD MK+ +  K +A +         P  +YIG+L + AKVR  E DR++ER+L KE +EQDK     T +FVT+AYKK+L E RKW+ + R  DE E+R      GM+GFYS+L+T+NIA G
Sbjct:   52 VAQQMRDLGAAQRKRAXXQAAQAAAVDPSIYDYDGVYDQMKEDERKKISARSGLSNTNHSKPGARYIGSLKQAAKVREREFDRVYERQLLKE-QEQDKDTYGDTERFVTAAYKKQLQESRKWDAEDRRMDEVEERTSAQTSGMAGFYSNLLTRNIAAG 208
[Close]
BLAST of mRNA_H-elongata_contig18298.4911.1 vs. uniprot
Match: W7TFP5_9STRA (DUF2040 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFP5_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.090e-22
Identity = 83/232 (35.78%), Postives = 128/232 (55.17%), Query Frame = 1 
Query:  127 YIMRKSGLKFGLI-GSASSLKKEGGKARPIGSKPLPRRRPAG-ATAVFDADSDEEPQDDP--RGVAAVNKRLAAISAKQERQAKKEFENALQADPSVFDYDVAYDGMKQSQVSKAAAATVAREKEKRLPKYIGNLLKQAKVRALESDRIFERKLQKEREEQDKVEGEATMKFVTSAYKKKLVEQRKWELQQRLDDEREQRRDV---------SNKGMSGFYSSLITKNIAMG 783
            Y  +    K+GL+     ++    G+ RP  + P   RRPAG A ++ D DSD+  Q++      A+ NK L A S K ++  ++    A  +DPS++DYD  YD +   +  +   A  A ++EK+  +YI NL + A+++  E DR +ER+L KER+E+D +  +  + FVTSAYKKKL+E +KWE   RL++                    GM  F+S+L+TKNIAMG
Sbjct:    2 YGQQSGPKKYGLVVPQKKAVPGMRGRPRPASAAP---RRPAGSAFSLDDDDSDDNGQEEDGLASKASFNKMLQAQSIKAQKSLEEAEAAARASDPSIYDYDAVYDEIHAKREERDNMAAEAAKEEKKTSRYITNLKRAAELKKQEQDRFYERRLAKERKEEDALYKDKDV-FVTSAYKKKLMETQKWETIDRLEEXXXXXXXXXXXXKGAPGGGSGMDAFFSNLLTKNIAMG 229
[Close]
BLAST of mRNA_H-elongata_contig18298.4911.1 vs. uniprot
Match: A0A2J8A7L9_9CHLO (Nuclear speckle splicing regulatory protein 1 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A7L9_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 1.160e-22
Identity = 86/220 (39.09%), Postives = 125/220 (56.82%), Query Frame = 1 
Query:  136 RKSGLKFGLIGSASSLKKEGGKARPIGSKPLPRRRPAGATAVF-DADSDEEPQDDPRGVAAVNKRLAAISAKQERQAKKEFENALQADPSVFDYDVAYDGMKQSQVSKAAAATVAREKEK--RLPKYIGNLLKQAKVRALESDRIFERKLQKEREEQDKVEGEATMKFVTSAYKKKLVEQRKWELQQRLDDEREQRRDVSNKG-MSGFYSSLITKNIAMG 783
            +K G+  G  G    L+K G K    G+ P    R    T VF D DS+EE  +      A  KR AA       + ++ +E+AL  DPSVFDYD  YDGM+Q       A TV ++++K  R  KYI +LL QA+ R  E+D ++ER++ +ER+++D +  E   KFVT AY++KL E +KW+      +  EQ+ DV + G M  FY++L+TKN+A G
Sbjct:    3 KKPGVLIGHKGVQYGLQKAGPKP---GAPPAASGRKPAPTNVFGDDDSEEEGVEAQIERQAEKKRAAA-------KVQQMYEDALAQDPSVFDYDGVYDGMQQ-------ARTVPKQQDKVQRQSKYIASLLDQAQQRKREADVLYERRMVRERQQEDHL-FEDKEKFVTGAYRRKLEEDKKWQEXXXXXELEEQKHDVRSVGHMGNFYANLLTKNVAFG 204
[Close]
BLAST of mRNA_H-elongata_contig18298.4911.1 vs. uniprot
Match: A0A7J7DNP0_TRIWF (Nuclear speckle splicing regulatory protein 1-like n=2 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7DNP0_TRIWF)

HSP 1 Score: 107 bits (266), Expect = 2.380e-22
Identity = 82/189 (43.39%), Postives = 109/189 (57.67%), Query Frame = 1 
Query:  220 KPLPRRRPAGATAVFDADSDEEPQDDPRGVAAVNKRLAAISAKQERQAKKEFENALQADPSVFDYDVAYDGMKQSQVSKAAAATVAREKEKRLPKYIGNLLKQAKVRALESDRIFERKLQKEREEQDKVEGEATMKFVTSAYKKKLVEQRKWELQQRLDDEREQRRDVSNK-GMSGFYSSLITKNIAMG 783
            K  P R P      F  D D+  + +    A+ NK L  I    E Q KK    AL+ DPSVFDYD  YD MK        A   A+++E+R PKYI NL+K+A+ R    + ++ERKL KER E+D +  +   KFVTSAYKKKL EQ KW  ++RL + RE++ DV+ K  +S FY +L  KN+A G
Sbjct:   17 KKQPGRPPLPTPLGFRDDDDDNVESEISRQASKNKSLKEI----EEQHKK----ALEEDPSVFDYDGVYDEMKGK-----VARPRAQDREERKPKYIQNLIKKAEERKQSQEIVYERKLAKERSEEDHIYADKD-KFVTSAYKKKLAEQAKWMEEERLRELREEKEDVTKKTDLSDFYFNL-EKNVAFG 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18298.4911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R5_ECTSI4.600e-10661.33DUF2040 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YZI8_9STRA2.630e-4650.45Coiled-coil domain-containing protein 55-domain co... [more]
A0A7S3HBP6_9STRA5.280e-2639.44Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S1XVS8_9STRA6.430e-2552.21Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8K1FKC2_PYTOL3.560e-2438.72Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZKX0_9STRA2.450e-2346.90DUF2040 domain-containing protein n=1 Tax=Achlya h... [more]
A0A7S4E5L4_9STRA9.190e-2343.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W7TFP5_9STRA1.090e-2235.78DUF2040 domain-containing protein n=2 Tax=Monodops... [more]
A0A2J8A7L9_9CHLO1.160e-2239.09Nuclear speckle splicing regulatory protein 1 n=1 ... [more]
A0A7J7DNP0_TRIWF2.380e-2243.39Nuclear speckle splicing regulatory protein 1-like... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18298contigH-elongata_contig18298:1414..4302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.2
Seed ortholog evalue5.8e-90
Seed eggNOG ortholog2880.D7G2R5
Preferred nameNSRP1
KEGG koko:K07752,ko:K11414,ko:K13206,ko:K14437,ko:K20526
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009791,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0040039,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048024,GO:0048856,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1990904
EggNOG free text desc.mRNA binding
EggNOG OGsKOG2117@1,KOG2117@2759
Ec32 ortholog descriptionDomain of unknown function DUF2040
Ec32 orthologEc-11_003220.1
EC3.4.17.22,3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03036,ko03041,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size1326
Cds size1326
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18298.4911.1prot_H-elongata_contig18298.4911.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18298 1414..4302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.5493608-CDS-H-elongata_contig18298:1413..18561622930051.5493608-CDS-H-elongata_contig18298:1413..1856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 1414..1856 +
1691679261.9106808-CDS-H-elongata_contig18298:1413..18561691679261.9106808-CDS-H-elongata_contig18298:1413..1856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 1414..1856 +
1622930051.5626137-CDS-H-elongata_contig18298:2284..24441622930051.5626137-CDS-H-elongata_contig18298:2284..2444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 2285..2444 +
1691679261.9238176-CDS-H-elongata_contig18298:2284..24441691679261.9238176-CDS-H-elongata_contig18298:2284..2444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 2285..2444 +
1622930051.5757868-CDS-H-elongata_contig18298:3320..34601622930051.5757868-CDS-H-elongata_contig18298:3320..3460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 3321..3460 +
1691679261.9314854-CDS-H-elongata_contig18298:3320..34601691679261.9314854-CDS-H-elongata_contig18298:3320..3460Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 3321..3460 +
1622930051.589952-CDS-H-elongata_contig18298:3665..40201622930051.589952-CDS-H-elongata_contig18298:3665..4020Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 3666..4020 +
1691679261.9388547-CDS-H-elongata_contig18298:3665..40201691679261.9388547-CDS-H-elongata_contig18298:3665..4020Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 3666..4020 +
1622930051.601262-CDS-H-elongata_contig18298:4074..43021622930051.601262-CDS-H-elongata_contig18298:4074..4302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 4075..4302 +
1691679261.9462893-CDS-H-elongata_contig18298:4074..43021691679261.9462893-CDS-H-elongata_contig18298:4074..4302Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18298 4075..4302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18298.4911.1

>prot_H-elongata_contig18298.4911.1 ID=prot_H-elongata_contig18298.4911.1|Name=mRNA_H-elongata_contig18298.4911.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=442bp
MTLLISINKVIFHRSEASTTKTCVNSLLKEANCDVRERLPPSYIMRKSGL
KFGLIGSASSLKKEGGKARPIGSKPLPRRRPAGATAVFDADSDEEPQDDP
RGVAAVNKRLAAISAKQERQAKKEFENALQADPSVFDYDVAYDGMKQSQV
SKAAAATVAREKEKRLPKYIGNLLKQAKVRALESDRIFERKLQKEREEQD
KVEGEATMKFVTSAYKKKLVEQRKWELQQRLDDEREQRRDVSNKGMSGFY
SSLITKNIAMGGGGEESASAAAPRDDSNRKEATDDGELHRGNSKTRTGHK
RTIDDKEGGNGSTDSADRDGSNMDGDTAPTARMVDPRAATAAKAKGDKNP
PDDEGAAAEAASAATEADDGGARKRVRLGAMTSGVASDEALEEGGCRDGE
GEKDKEVKTASNSEKAASLKARKEAAIKAARERFLARRKGS*
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mRNA from alignment at H-elongata_contig18298:1414..4302+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18298.4911.1 ID=mRNA_H-elongata_contig18298.4911.1|Name=mRNA_H-elongata_contig18298.4911.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2889bp|location=Sequence derived from alignment at H-elongata_contig18298:1414..4302+ (Himanthalia elongata Himel1 dioecious)
ATGACTTTATTGATAAGCATCAATAAAGTCATCTTCCATAGGAGTGAAGC
GTCAACAACGAAAACCTGTGTCAATTCCTTATTGAAGGAGGCCAACTGCG
ACGTGCGCGAAAGGTTACCGCCATCATATATCATGCGCAAGTCGGGGCTA
AAGTTCGGCTTGATCGGGTCGGCGTCGTCGCTGAAAAAGGAGGGGGGCAA
GGCAAGACCTATCGGGTCTAAGCCTCTGCCCCGCCGACGACCAGCCGGTG
CAACGGCAGTGTTCGACGCAGACTCGGACGAGGAGCCTCAAGACGACCCT
CGCGGAGTAGCGGCGGTGAACAAGAGACTGGCGGCTATATCGGCGAAGCA
GGAGAGACAAGCCAAGAAAGAGTTCGAGAATGCTCTCCAGGCCGACCCCA
GTGTATTCGACTACGACGTTGCCTATGATGGTATGAAACAGAGGTAAACA
CACGGGTTGTCTATTTGAAGATTATCCCTCTCGCGCTAATATACGTTTCA
AGAATAAATATTAATTGTGGAGCGACTGCTGTGACGTAGTCAAGCCTGTT
CTTCTACACCGGTACTGTAGTTCACTCTCTAGGCTCTGGTTTTGCGTCCC
CACACGATGAATAATGTAAGTGTACTGGATAATAATGGGATCCCCGATAT
TATACCGTCTAATAATCACATTTGACGATTTTGTGCTCAAAGGTAGTAAT
ATACACATTTGAACCTGACGATAGTTGGTCCCCTGGACTGCACCTCTCAC
GGTAAGGTGTGGATGTCCGGAGGGTTGAAATGAGTTCATGTTTTTTTTTT
AAGAAAAAAACACAAACTCCGAGCACAACAACCCCGGCGCAATGACCTCT
TTCTCTGAATGCATCAAACAGTCAAGTGTCAAAGGCGGCCGCCGCAACGG
TTGCTAGAGAAAAAGAGAAGAGATTGCCCAAATACATTGGAAACCTGCTC
AAGCAAGCCAAGGTACGGGCGCTGGAATCGGACCGCATTTTCGAGCGCAA
GCTCCAGAAGGAAAGAGAGGAACAGGACAAGGTGGGTCATACATTTAAGG
CCCTTTTCTTGTACCTCCTTAAATATAATTATGTGTGAACTCGAAGAACT
CCCCGATAGCCAGCCAGAGGTGCCTCCGATAGTGTATGTTACTGTATCGC
ACGTGTCCACTCTATGTACCAATAGTGGGTCCATGGGGTTACCTGAATAG
CCTGCACCAGTTACTCAACCTACCTTAAGAAATGCTGGCTCAGTGTCGGT
GGACTCTTGGAGGTAAACGTCATCGGTACGCAATTGCGTGACCTGATAAA
AGCGGGATTAGCCTGATGACGGTTTGACGGTAGAGATGAACACCGTCGCG
GAAAACGGGAGGATCGAGAGGATCCCAGAAGTACGCACCAGATTCAGCCT
GGGTTGAGAGAATGAGCAAGCTGACGCGGGGCAGGACTGCCGAACCCGTC
TCGCGAGACCAAATTCTCAGGCGCGAACCGGGACAGGGAAATTCATTTTT
CCTTTTCAGCTGACCACAAGCAAGAAGCAACCAAATCCAGTTGATCCTTA
CTTAGCTATATGTGATGATGTCATGACCACACACTGTCTGTACAGTTTTA
CGCCCCCCCCCCGCGCTCCATCTGCAAGCAGTAATGTCCACATTCGAACC
TGACCATAGTTGGTCCTCTGGACTGCACCTCTCACGGTGCTGAAAAGGCG
TGGATGTTCGGAGGGTTGTAATTAGTTGTGCAACAACGGCCGTCGAGATC
GCTGTCGGGATGTCTTCCGCAGAAAAACTTGAGAACTGATAGCCTGCAGG
AGGGCGGCCGGCAAAAGTCACCCTTTAGTCTATCTAGGATGGGACGGGAA
TTCCATTCTGCAAACGTATTTGTTTGAAAACCTTGTGCTTTACTTTTTGT
CTGTCAGGTGGAGGGCGAGGCCACGATGAAGTTCGTGACATCTGCCTACA
AGAAGAAGCTCGTGGAGCAGAGGAAGTGGGAGCTCCAGCAGCGGCTGGAT
GACGAAAGGGAGCAACGCCGAGACGTTTCCAACAAGGGTATGAGCGGGTA
CGTGGCGAAAATAATAGGGCGCCTTTGCTGTCTGTAGCCCAGAGCTTTAA
ACTAAGTATCCCACGCGTGTTCCGGGCTGTGTCTCTTGGTAAGAACGAGG
GCAAACACTAATCTGGCGCATTGACTCCTGGTGGAAGTGCCTCAAAAAAT
AATATCGTCGAACTCCCAAAGCCCAAAGGAATCACCTCCGCACGCTTAAC
AGGTTCTACTCGAGTCTTATTACCAAGAACATCGCCATGGGTGGCGGTGG
CGAGGAGTCCGCAAGCGCCGCAGCACCTCGAGACGACTCAAACCGGAAAG
AGGCCACAGACGACGGCGAATTACATCGAGGGAACTCCAAGACAAGGACA
GGGCATAAACGAACTATCGACGACAAAGAGGGGGGCAATGGGAGCACGGA
TTCCGCTGATAGAGACGGGTCGAATATGGACGGAGATACGGCTCCGACCG
CAAGGATGGTCGATCCGCGAGCAGCAACCGCCGCGAAAGCAAAGGGAGAC
AAAAACCCACCAGACGATGAGGGAGCCGCTGCCGAAGCCGCGTCTGCGGC
CACGGAGGTCGAAGCCAGCAGCGACGCGGGCAGTGGTAAAACTTGGGAGC
GAGCTGGACAGGCTGATGACGGTGGCGCTCGGAAAAGGGTTCGCCTGGGA
GCAATGACTTCTGGTGTAGCGAGCGATGAGGCGTTGGAGGAGGGAGGGTG
CAGAGATGGCGAGGGAGAAAAAGACAAGGAAGTGAAAACGGCGAGTAATT
CAGAAAAGGCGGCGTCCTTGAAGGCGAGGAAAGAGGCGGCCATCAAGGCG
GCGCGAGAGCGCTTCTTGGCGCGAAGGAAAGGCTCCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig18298:1414..4302+

>mRNA_H-elongata_contig18298.4911.1 ID=mRNA_H-elongata_contig18298.4911.1|Name=mRNA_H-elongata_contig18298.4911.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2652bp|location=Sequence derived from alignment at H-elongata_contig18298:1414..4302+ (Himanthalia elongata Himel1 dioecious)
ATGACTTTATTGATAAGCATCAATAAAGTCATCTTCCATAGGAGTGAAGC
GTCAACAACGAAAACCTGTGTCAATTCCTTATTGAAGGAGGCCAACTGCG
ACGTGCGCGAAAGGTTACCGCCATCATATATCATGCGCAAGTCGGGGCTA
AAGTTCGGCTTGATCGGGTCGGCGTCGTCGCTGAAAAAGGAGGGGGGCAA
GGCAAGACCTATCGGGTCTAAGCCTCTGCCCCGCCGACGACCAGCCGGTG
CAACGGCAGTGTTCGACGCAGACTCGGACGAGGAGCCTCAAGACGACCCT
CGCGGAGTAGCGGCGGTGAACAAGAGACTGGCGGCTATATCGGCGAAGCA
GGAGAGACAAGCCAAGAAAGAGTTCGAGAATGCTCTCCAGGCCGACCCCA
GTGTATTCGACTACGACGTTGCCTATGATGGTATGAAACAGAGATGACTT
TATTGATAAGCATCAATAAAGTCATCTTCCATAGGAGTGAAGCGTCAACA
ACGAAAACCTGTGTCAATTCCTTATTGAAGGAGGCCAACTGCGACGTGCG
CGAAAGGTTACCGCCATCATATATCATGCGCAAGTCGGGGCTAAAGTTCG
GCTTGATCGGGTCGGCGTCGTCGCTGAAAAAGGAGGGGGGCAAGGCAAGA
CCTATCGGGTCTAAGCCTCTGCCCCGCCGACGACCAGCCGGTGCAACGGC
AGTGTTCGACGCAGACTCGGACGAGGAGCCTCAAGACGACCCTCGCGGAG
TAGCGGCGGTGAACAAGAGACTGGCGGCTATATCGGCGAAGCAGGAGAGA
CAAGCCAAGAAAGAGTTCGAGAATGCTCTCCAGGCCGACCCCAGTGTATT
CGACTACGACGTTGCCTATGATGGTATGAAACAGAGTCAAGTGTCAAAGG
CGGCCGCCGCAACGGTTGCTAGAGAAAAAGAGAAGAGATTGCCCAAATAC
ATTGGAAACCTGCTCAAGCAAGCCAAGGTACGGGCGCTGGAATCGGACCG
CATTTTCGAGCGCAAGCTCCAGAAGGAAAGAGAGGAACAGGACAAGTCAA
GTGTCAAAGGCGGCCGCCGCAACGGTTGCTAGAGAAAAAGAGAAGAGATT
GCCCAAATACATTGGAAACCTGCTCAAGCAAGCCAAGGTACGGGCGCTGG
AATCGGACCGCATTTTCGAGCGCAAGCTCCAGAAGGAAAGAGAGGAACAG
GACAAGGTGGAGGGCGAGGCCACGATGAAGTTCGTGACATCTGCCTACAA
GAAGAAGCTCGTGGAGCAGAGGAAGTGGGAGCTCCAGCAGCGGCTGGATG
ACGAAAGGGAGCAACGCCGAGACGTTTCCAACAAGGGTATGAGCGGGTGG
AGGGCGAGGCCACGATGAAGTTCGTGACATCTGCCTACAAGAAGAAGCTC
GTGGAGCAGAGGAAGTGGGAGCTCCAGCAGCGGCTGGATGACGAAAGGGA
GCAACGCCGAGACGTTTCCAACAAGGGTATGAGCGGGTTCTACTCGAGTC
TTATTACCAAGAACATCGCCATGGGTGGCGGTGGCGAGGAGTCCGCAAGC
GCCGCAGCACCTCGAGACGACTCAAACCGGAAAGAGGCCACAGACGACGG
CGAATTACATCGAGGGAACTCCAAGACAAGGACAGGGCATAAACGAACTA
TCGACGACAAAGAGGGGGGCAATGGGAGCACGGATTCCGCTGATAGAGAC
GGGTCGAATATGGACGGAGATACGGCTCCGACCGCAAGGATGGTCGATCC
GCGAGCAGCAACCGCCGCGAAAGCAAAGGGAGACAAAAACCCACCAGACG
ATGAGGGAGCCGCTGCCGAAGCCGCGTCTGCGGCCACGGAGGTTCTACTC
GAGTCTTATTACCAAGAACATCGCCATGGGTGGCGGTGGCGAGGAGTCCG
CAAGCGCCGCAGCACCTCGAGACGACTCAAACCGGAAAGAGGCCACAGAC
GACGGCGAATTACATCGAGGGAACTCCAAGACAAGGACAGGGCATAAACG
AACTATCGACGACAAAGAGGGGGGCAATGGGAGCACGGATTCCGCTGATA
GAGACGGGTCGAATATGGACGGAGATACGGCTCCGACCGCAAGGATGGTC
GATCCGCGAGCAGCAACCGCCGCGAAAGCAAAGGGAGACAAAAACCCACC
AGACGATGAGGGAGCCGCTGCCGAAGCCGCGTCTGCGGCCACGGAGGCTG
ATGACGGTGGCGCTCGGAAAAGGGTTCGCCTGGGAGCAATGACTTCTGGT
GTAGCGAGCGATGAGGCGTTGGAGGAGGGAGGGTGCAGAGATGGCGAGGG
AGAAAAAGACAAGGAAGTGAAAACGGCGAGTAATTCAGAAAAGGCGGCGT
CCTTGAAGGCGAGGAAAGAGGCGGCCATCAAGGCGGCGCGAGAGCGCTTC
TTGGCGCGAAGGAAAGGCTCCTAAGCTGATGACGGTGGCGCTCGGAAAAG
GGTTCGCCTGGGAGCAATGACTTCTGGTGTAGCGAGCGATGAGGCGTTGG
AGGAGGGAGGGTGCAGAGATGGCGAGGGAGAAAAAGACAAGGAAGTGAAA
ACGGCGAGTAATTCAGAAAAGGCGGCGTCCTTGAAGGCGAGGAAAGAGGC
GGCCATCAAGGCGGCGCGAGAGCGCTTCTTGGCGCGAAGGAAAGGCTCCT
AA
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