mRNA_H-elongata_contig182937.4910.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A6H5KXN7_9PHAE (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN7_9PHAE) HSP 1 Score: 123 bits (309), Expect = 2.540e-31 Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 1
Query: 1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
V GDVFRAP+HL FSALFGTGCQL V+VL+VILFA+AGPLHGDVYEERGE+V+TF+VCYA TS VSG++S
Sbjct: 287 VHGDVFRAPKHLMLFSALFGTGCQLAVLVLLVILFAIAGPLHGDVYEERGEMVTTFIVCYALTSLVSGYMS 357
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: D8LEY0_ECTSI (Transmembrane 9 superfamily member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY0_ECTSI) HSP 1 Score: 119 bits (298), Expect = 9.980e-31 Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 1
Query: 1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSG 204
V GDVFRAP+HL FSALFGTGCQL V+VL+VILFA+AGPLHGDVYEERGE+V+TF+VCYA T+ +SG
Sbjct: 287 VHGDVFRAPKHLMLFSALFGTGCQLAVLVLLVILFAIAGPLHGDVYEERGEMVTTFIVCYALTTLISG 354
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A835YQT7_9STRA (Transmembrane 9 superfamily member n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQT7_9STRA) HSP 1 Score: 100 bits (248), Expect = 5.740e-23 Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
Query: 1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
V GDVFRAP HL F+AL+GTG Q+ +V V+LFAMAGPLHGDVYEERGE+V+T +V YA T+ V+G+ S
Sbjct: 277 VHGDVFRAPAHLMLFAALYGTGWQIATLVAGVVLFAMAGPLHGDVYEERGEMVTTVIVVYALTAAVAGYGS 347
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: W7TF26_9STRA (Transmembrane 9 superfamily member n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TF26_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 2.010e-22 Identity = 45/71 (63.38%), Postives = 56/71 (78.87%), Query Frame = 1
Query: 1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
V GDVFRAP HL FSAL+G GCQ +VL+V+ +A+AGPLHGDVYEERGELV++ +V YA T V+G+ S
Sbjct: 278 VHGDVFRAPLHLMFFSALYGIGCQFLALVLVVVGWAIAGPLHGDVYEERGELVTSVIVAYALTCLVAGYTS 348
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A7R9W337_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W337_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 6.510e-22 Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
V GDVFRAP HL F+AL GTG QL V+ L VILFA+AGP+HG+V+EERGE++ + YA +S VSG+ S
Sbjct: 82 VHGDVFRAPSHLPLFAALIGTGWQLVVLTLGVILFAVAGPIHGEVHEERGEILHAVVWIYALSSVVSGYAS 152
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A448Z640_9STRA (Transmembrane 9 superfamily member n=3 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448Z640_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 3.410e-21 Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
V GDVFRAP L F+AL GTG QL V+ VILFA+ GP+HG+V+EERGE++ L+CYAF++ VSG+VS
Sbjct: 320 VHGDVFRAPSMLPLFAALVGTGSQLVVLTFGVILFAVLGPVHGEVHEERGEMMQAILICYAFSTIVSGFVS 390
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A7S3M626_9STRA (Transmembrane 9 superfamily member (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M626_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.130e-20 Identity = 40/72 (55.56%), Postives = 58/72 (80.56%), Query Frame = 1
Query: 1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGP-LHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
V GDVFR PE+L F A+ GTG QL ++VL VIL+AM GP LHG++YE+RGE++STF++C++ +S ++G+ S
Sbjct: 232 VHGDVFRPPENLELFCAIVGTGWQLVILVLFVILYAMLGPYLHGNMYEDRGEMISTFIICFSLSSAIAGYSS 303
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A1E7FNJ7_9STRA (Transmembrane 9 superfamily member n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FNJ7_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.210e-20 Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 1
Query: 1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
V GDVFRAP L F+AL GTG QL V+ VILFA+ GP+HG+V+EERG+++ L+CYAF++ VSG++S
Sbjct: 322 VHGDVFRAPSTLPLFAALIGTGWQLVVLTFGVILFAVLGPVHGEVHEERGKMMQAILICYAFSTIVSGYMS 392
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A7S4DBZ3_HETAK (Transmembrane 9 superfamily member n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBZ3_HETAK) HSP 1 Score: 92.4 bits (228), Expect = 2.250e-20 Identity = 41/71 (57.75%), Postives = 53/71 (74.65%), Query Frame = 1
Query: 1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
V GDVFRAP HL F+AL GTG QL + +LFA+AGPLHGDVYEERGE+++ +V YA ++ V+G+ S
Sbjct: 126 VHGDVFRAPRHLALFAALVGTGWQLAALAAGAVLFALAGPLHGDVYEERGEMMTACIVMYALSTVVAGYAS 196
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Match: A0A8J9X954_PHATR (Hypothetical protein n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X954_PHATR) HSP 1 Score: 92.4 bits (228), Expect = 2.450e-20 Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 1 VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGELVSTFLVCYAFTSFVSGWVS 213
V GDVFRAP +L F+AL GTG QL V+ L VILFA+ GP+HG V+EERGEL+ + CY+ +S V+G+VS
Sbjct: 139 VHGDVFRAPSYLPLFAALLGTGWQLVVLTLGVILFAVLGPMHGQVHEERGELLHAVIACYSLSSIVAGFVS 209 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182937.4910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig182937.4910.1 >prot_H-elongata_contig182937.4910.1 ID=prot_H-elongata_contig182937.4910.1|Name=mRNA_H-elongata_contig182937.4910.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp VRGDVFRAPEHLTTFSALFGTGCQLTVIVLMVILFAMAGPLHGDVYEERGback to top mRNA from alignment at H-elongata_contig182937:959..1171- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig182937.4910.1 ID=mRNA_H-elongata_contig182937.4910.1|Name=mRNA_H-elongata_contig182937.4910.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig182937:959..1171- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig182937:959..1171- >mRNA_H-elongata_contig182937.4910.1 ID=mRNA_H-elongata_contig182937.4910.1|Name=mRNA_H-elongata_contig182937.4910.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig182937:959..1171- (Himanthalia elongata Himel1 dioecious)back to top |