mRNA_H-elongata_contig18287.4908.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18287.4908.1
Unique NamemRNA_H-elongata_contig18287.4908.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18287.4908.1 vs. uniprot
Match: A0A6H5KCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG1_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.410e-22
Identity = 46/76 (60.53%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:    1 QARPAAFPEASRQPNGGYWMSEKTGDTLPPPSAYEIEEAAYMIKI----MERLRTTGYDEELPSGYKPKIYDLSGG 216
            QA+PA FPE SR P GGY++ E   DTLPPPSA+E++EAA+M+K+    MERLRTTG DE LP+G+ P+IYD + G
Sbjct: 2561 QAKPAQFPEESRLPGGGYFVEEGPNDTLPPPSAFEMQEAAHMMKVYNDMMERLRTTGMDETLPNGFTPRIYDFTDG 2636
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18287.4908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KCG1_9PHAE1.410e-2260.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18287contigH-elongata_contig18287:2533..2760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.4353573-CDS-H-elongata_contig18287:2532..27601622930051.4353573-CDS-H-elongata_contig18287:2532..2760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18287 2533..2760 +
1691679261.8820236-CDS-H-elongata_contig18287:2532..27601691679261.8820236-CDS-H-elongata_contig18287:2532..2760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18287 2533..2760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18287.4908.1prot_H-elongata_contig18287.4908.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18287 2533..2760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18287.4908.1

>prot_H-elongata_contig18287.4908.1 ID=prot_H-elongata_contig18287.4908.1|Name=mRNA_H-elongata_contig18287.4908.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
QARPAAFPEASRQPNGGYWMSEKTGDTLPPPSAYEIEEAAYMIKIMERLR
TTGYDEELPSGYKPKIYDLSGGSGH*
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mRNA from alignment at H-elongata_contig18287:2533..2760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18287.4908.1 ID=mRNA_H-elongata_contig18287.4908.1|Name=mRNA_H-elongata_contig18287.4908.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig18287:2533..2760+ (Himanthalia elongata Himel1 dioecious)
CAAGCACGACCAGCAGCATTCCCCGAGGCGAGCCGACAGCCCAACGGTGG
GTATTGGATGTCGGAGAAAACTGGGGACACCCTTCCCCCGCCCTCCGCGT
ATGAAATAGAGGAGGCCGCGTATATGATAAAAATTATGGAGCGGTTGCGC
ACAACGGGTTATGACGAGGAACTTCCCAGCGGTTACAAGCCGAAGATATA
CGACTTGAGTGGCGGATCTGGGCATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig18287:2533..2760+

>mRNA_H-elongata_contig18287.4908.1 ID=mRNA_H-elongata_contig18287.4908.1|Name=mRNA_H-elongata_contig18287.4908.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig18287:2533..2760+ (Himanthalia elongata Himel1 dioecious)
CAAGCACGACCAGCAGCATTCCCCGAGGCGAGCCGACAGCCCAACGGTGG
GTATTGGATGTCGGAGAAAACTGGGGACACCCTTCCCCCGCCCTCCGCGT
ATGAAATAGAGGAGGCCGCGTATATGATAAAAATTATGGAGCGGTTGCGC
ACAACGGGTTATGACGAGGAACTTCCCAGCGGTTACAAGCCGAAGATATA
CGACTTGAGTGGCGGATCTGGGCATTAACAAGCACGACCAGCAGCATTCC
CCGAGGCGAGCCGACAGCCCAACGGTGGGTATTGGATGTCGGAGAAAACT
GGGGACACCCTTCCCCCGCCCTCCGCGTATGAAATAGAGGAGGCCGCGTA
TATGATAAAAATTATGGAGCGGTTGCGCACAACGGGTTATGACGAGGAAC
TTCCCAGCGGTTACAAGCCGAAGATATACGACTTGAGTGGCGGATCTGGG
CATTAA
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