mRNA_H-elongata_contig18283.4907.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18283.4907.1
Unique NamemRNA_H-elongata_contig18283.4907.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18283.4907.1 vs. uniprot
Match: A0A6H5JRL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.390e-18
Identity = 37/44 (84.09%), Postives = 39/44 (88.64%), Query Frame = 2 
Query:  347 YSRRPGDWECPSCGNNCFASRIECNRCQTPKPEGAGADGYAPRG 478
            Y+RRPGDWECPSCGNNCFASR+ECNRCQTPKP GAG  GY  RG
Sbjct:   49 YNRRPGDWECPSCGNNCFASRVECNRCQTPKPAGAGGGGYGERG 92
[Close]
BLAST of mRNA_H-elongata_contig18283.4907.1 vs. uniprot
Match: D7FHH5_ECTSI (Ewing sarcoma breakpoint region 1b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH5_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 4.260e-16
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 2 
Query:  347 YSRRPGDWECPSCGNNCFASRIECNRCQTPKPEGAGADGY 466
            Y+RRPGDWECP+CGNNCFASR+ECNRCQTPKP GAG   Y
Sbjct:   49 YNRRPGDWECPNCGNNCFASRVECNRCQTPKPVGAGGXXY 88
[Close]
BLAST of mRNA_H-elongata_contig18283.4907.1 vs. uniprot
Match: D8LIQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIQ0_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 1.180e-13
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 2 
Query:  350 SRRPGDWECPSCGNNCFASRIECNRCQTPKPEGAG 454
            ++RPGDWECPSCGNNCFASR ECNRCQTPKP GAG
Sbjct:   47 NKRPGDWECPSCGNNCFASRSECNRCQTPKPAGAG 81
[Close]
BLAST of mRNA_H-elongata_contig18283.4907.1 vs. uniprot
Match: A0A6H5L8L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8L8_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 5.630e-9
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 2 
Query:  356 RPGDWECPSCGNNCFASRIECNRCQTPKPEG 448
            R GDW CPSCGNNCFA R ECNRCQTPKP G
Sbjct:  144 RDGDWACPSCGNNCFAFRNECNRCQTPKPSG 174
[Close]
BLAST of mRNA_H-elongata_contig18283.4907.1 vs. uniprot
Match: A0A2V0NK80_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NK80_9CHLO)

HSP 1 Score: 64.7 bits (156), Expect = 1.470e-8
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 2 
Query:  356 RPGDWECPSCGNNCFASRIECNRCQTPKPEGAG 454
            RPGDW CPSCGNNC+A R  CNRC TPKP+G G
Sbjct:  147 RPGDWPCPSCGNNCYAFRNACNRCGTPKPDGGG 179
[Close]
BLAST of mRNA_H-elongata_contig18283.4907.1 vs. uniprot
Match: A0A7S3BW32_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BW32_9VIRI)

HSP 1 Score: 58.5 bits (140), Expect = 1.020e-7
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 2 
Query:  356 RPGDWECPSCGNNCFASRIECNRCQTPKPEG 448
            RPGDW CPSCG N FAS+  C RCQTPKP+G
Sbjct:   27 RPGDWTCPSCGANVFASKNSCYRCQTPKPDG 57
[Close]
BLAST of mRNA_H-elongata_contig18283.4907.1 vs. uniprot
Match: A0A5J4XE95_9CHLO (RNA-binding cabeza n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XE95_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 1.040e-7
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 2 
Query:  356 RPGDWECPSCGNNCFASRIECNRCQTPKPEGAG 454
            RPGDW CP+C N CFAS+ +CNRC TPKP GAG
Sbjct:  245 RPGDWPCPNCNNICFASKDKCNRCDTPKPPGAG 277
[Close]
BLAST of mRNA_H-elongata_contig18283.4907.1 vs. uniprot
Match: A0A7S0F4W8_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F4W8_9CRYP)

HSP 1 Score: 61.6 bits (148), Expect = 1.170e-7
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 2 
Query:  356 RPGDWECPSCGNNCFASRIECNRCQTPKPEGAGADGY 466
            RPGDW+CP CG+N FAS++ C +C+TPKP+G+ + GY
Sbjct:  143 RPGDWQCPGCGSNVFASKMICYKCRTPKPDGSSSQGY 179
[Close]
BLAST of mRNA_H-elongata_contig18283.4907.1 vs. uniprot
Match: L1JKK8_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JKK8_GUITC)

HSP 1 Score: 61.6 bits (148), Expect = 1.220e-7
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 2 
Query:  356 RPGDWECPSCGNNCFASRIECNRCQTPKPEGAGADGY 466
            RPGDW+CP CG+N FAS++ C +C+TPKPEGA +  Y
Sbjct:  156 RPGDWQCPGCGSNVFASKMICYKCRTPKPEGASSQAY 192
[Close]
BLAST of mRNA_H-elongata_contig18283.4907.1 vs. uniprot
Match: A0A6G1SNK9_9ACAR (RNA-binding protein EWS n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SNK9_9ACAR)

HSP 1 Score: 59.7 bits (143), Expect = 2.470e-7
Identity = 26/38 (68.42%), Postives = 27/38 (71.05%), Query Frame = 2 
Query:  350 SRRPGDWECPSCGNNCFASRIECNRCQTPKPEGAGADG 463
            S RPGDW CPSC NN FA R ECNRC+T KP  AG  G
Sbjct:  154 SGRPGDWACPSCNNNNFAYRQECNRCKTQKPHSAGGGG 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18283.4907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRL5_9PHAE1.390e-1884.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHH5_ECTSI4.260e-1682.50Ewing sarcoma breakpoint region 1b n=1 Tax=Ectocar... [more]
D8LIQ0_ECTSI1.180e-1388.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8L8_9PHAE5.630e-983.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V0NK80_9CHLO1.470e-875.76Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
A0A7S3BW32_9VIRI1.020e-774.19Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A5J4XE95_9CHLO1.040e-772.73RNA-binding cabeza n=1 Tax=Trebouxia sp. A1-2 TaxI... [more]
A0A7S0F4W8_9CRYP1.170e-759.46Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
L1JKK8_GUITC1.220e-762.16Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A6G1SNK9_9ACAR2.470e-768.42RNA-binding protein EWS n=1 Tax=Aceria tosichella ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18283contigH-elongata_contig18283:5243..6816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue9.8e-14
Seed eggNOG ortholog2880.D7FHH5
KEGG koko:K13098
KEGG Pathwayko05202,map05202
EggNOG free text desc.Zinc finger domain
EggNOG OGs2E2EG@1,2S9NA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size652
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18283.4907.1prot_H-elongata_contig18283.4907.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18283 6430..6816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.3764408-UTR-H-elongata_contig18283:5242..54991622930051.3764408-UTR-H-elongata_contig18283:5242..5499Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18283 5243..5499 +
1691679261.8498936-UTR-H-elongata_contig18283:5242..54991691679261.8498936-UTR-H-elongata_contig18283:5242..5499Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18283 5243..5499 +
1622930051.3879278-UTR-H-elongata_contig18283:6421..64291622930051.3879278-UTR-H-elongata_contig18283:6421..6429Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18283 6422..6429 +
1691679261.8615122-UTR-H-elongata_contig18283:6421..64291691679261.8615122-UTR-H-elongata_contig18283:6421..6429Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18283 6422..6429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930051.3997982-CDS-H-elongata_contig18283:6429..68161622930051.3997982-CDS-H-elongata_contig18283:6429..6816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18283 6430..6816 +
1691679261.872762-CDS-H-elongata_contig18283:6429..68161691679261.872762-CDS-H-elongata_contig18283:6429..6816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18283 6430..6816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18283.4907.1

>prot_H-elongata_contig18283.4907.1 ID=prot_H-elongata_contig18283.4907.1|Name=mRNA_H-elongata_contig18283.4907.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
MSYYHDGGGYGGGGGYGGGNHGGGGGGYSRRPGDWECPSCGNNCFASRIE
CNRCQTPKPEGAGADGYAPRGGGGGGGGYGGGGGYSGGGGYSGGGGYSGG
GGGYSGGGGGYTGGGGGGGGYSRRPGDW*
back to top

mRNA from alignment at H-elongata_contig18283:5243..6816+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18283.4907.1 ID=mRNA_H-elongata_contig18283.4907.1|Name=mRNA_H-elongata_contig18283.4907.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1574bp|location=Sequence derived from alignment at H-elongata_contig18283:5243..6816+ (Himanthalia elongata Himel1 dioecious)
GCTTAGTCTGCTCGGCCGACTAGTATCGCGCTCGCTGAGTGCCCTTGACA
TTGCTCGCTTTGAAATGTGTGGACTTAAACAAGAAGCCACCTGAGACAAC
TGGCTGCTATACTGTTAAGTTCTTTACGGGATGGCACTCCCGGGAGGACT
CATCGGCTGGGAGAAAGTTTTCACAATACAAACTGTCTGCGGTAAGTATA
CGGCACCGTTCCGAAGATTTCACTGCGGGTGGAAGTCTTTCAGTCAACGC
TGATACGGTGAGGGCCCAGACTGTATTTCGGAACCGCACTAGGCGATCGC
ATCCAGATGTTTTGTGTACGGTACATGGAACGTACTTTTTCGTCTTGACA
CATCAGTTGTTTTCTACCCGTTCAGGAGGTATCCAGCATTCGGCAGCAGT
TTTTTGCCGCGTGGTTTCATATTGCAGTCAATATTTTTCCTCTACGTCGT
TGGCTAACAGTCTGACTACGGCGAGGTGGGTTCGGGAAATGGGCAAGCTA
GAGGCGTAAACATAGTCGCCTCTTCTGTAAGGTAGATTTGATCCCAGGGT
TTCGTGCGCCGCTAGTTCAAACATCGAGTAGGGTGGCGTTGATGGTTGCG
AATCGCTACTACCGCTGAACTGCCTGGGAGCTTCTGTCTGCACCAGATAG
ACGGTACACTTCGTACAATTTCCAATACGTTCTCGTAGTTCGTCGAGACG
TTACGTCTTCGATCACAAACCGGAGCTTGCCGTCTGGGAGGAGCTATGTT
GTAGCTATAGGTCATATACATAAGAGTCCATGACAATCATATCAGTCCTA
AGAGCCTCACCATCTAAGGAGCATCCTTTGCTGAGGCAGGAATCGATGGA
TTCTCCCTCAGAATACACGGCAGAAGACTCCCTGTATTTTTTCTTTGGCA
ACGCTCAATACAGCTGTAGCCCCACTCTAGAAACTGTACATCGTCACATA
AAATAGGATAAAACCCGGGATAAAACAGGGTTGGAGTTCCTAGAATGAAT
TCCCTGGCGGTTGATATTTCGGACAAAAATGTGATTGGTAACATCAGCCC
GATCATGCGGCAGAACTCCCTACATTTTGTGGGCTTCGAATCCTGCGATT
TGTTGCGCACCCTGGAGAGCCGTTGTTCAAACTCACACACCCTCCTACTT
CACGATCACCCACTCAAACAATCTTCAAGCTTCGACTATGAGTTACTACC
ACGATGGAGGTGGTTATGGGGGTGGTGGAGGCTACGGCGGTGGAAACCAT
GGTGGGGGAGGAGGAGGGTATAGTCGCAGGCCGGGAGACTGGGAGTGTCC
CAGCTGCGGAAACAACTGCTTCGCGAGCCGCATCGAGTGCAATCGCTGCC
AGACCCCAAAGCCAGAGGGTGCAGGAGCCGATGGCTACGCCCCACGCGGT
GGTGGTGGCGGCGGTGGTGGCTACGGTGGTGGAGGTGGCTACTCAGGGGG
GGGTGGCTACTCAGGGGGGGGTGGCTACTCAGGAGGGGGTGGTGGTTATT
CTGGAGGGGGTGGTGGCTACACCGGTGGTGGCGGTGGCGGCGGCGGCTAC
AGCAGGAGGCCGGGTGACTGGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18283:5243..6816+

>mRNA_H-elongata_contig18283.4907.1 ID=mRNA_H-elongata_contig18283.4907.1|Name=mRNA_H-elongata_contig18283.4907.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig18283:5243..6816+ (Himanthalia elongata Himel1 dioecious)
ATGAGTTACTACCACGATGGAGGTGGTTATGGGGGTGGTGGAGGCTACGG
CGGTGGAAACCATGGTGGGGGAGGAGGAGGGTATAGTCGCAGGCCGGGAG
ACTGGGAGTGTCCCAGCTGCGGAAACAACTGCTTCGCGAGCCGCATCGAG
TGCAATCGCTGCCAGACCCCAAAGCCAGAGGGTGCAGGAGCCGATGGCTA
CGCCCCACGCGGTGGTGGTGGCGGCGGTGGTGGCTACGGTGGTGGAGGTG
GCTACTCAGGGGGGGGTGGCTACTCAGGGGGGGGTGGCTACTCAGGAGGG
GGTGGTGGTTATTCTGGAGGGGGTGGTGGCTACACCGGTGGTGGCGGTGG
CGGCGGCGGCTACAGCAGGAGGCCGGGTGACTGGTAAATGAGTTACTACC
ACGATGGAGGTGGTTATGGGGGTGGTGGAGGCTACGGCGGTGGAAACCAT
GGTGGGGGAGGAGGAGGGTATAGTCGCAGGCCGGGAGACTGGGAGTGTCC
CAGCTGCGGAAACAACTGCTTCGCGAGCCGCATCGAGTGCAATCGCTGCC
AGACCCCAAAGCCAGAGGGTGCAGGAGCCGATGGCTACGCCCCACGCGGT
GGTGGTGGCGGCGGTGGTGGCTACGGTGGTGGAGGTGGCTACTCAGGGGG
GGGTGGCTACTCAGGGGGGGGTGGCTACTCAGGAGGGGGTGGTGGTTATT
CTGGAGGGGGTGGTGGCTACACCGGTGGTGGCGGTGGCGGCGGCGGCTAC
AGCAGGAGGCCGGGTGACTGGTAA
back to top