mRNA_H-elongata_contig18272.4903.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18272.4903.1
Unique NamemRNA_H-elongata_contig18272.4903.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18272.4903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18272contigH-elongata_contig18272:44..447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.8295057-CDS-H-elongata_contig18272:43..951622930050.8295057-CDS-H-elongata_contig18272:43..95Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18272 44..95 +
1691679261.6055048-CDS-H-elongata_contig18272:43..951691679261.6055048-CDS-H-elongata_contig18272:43..95Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18272 44..95 +
1622930050.844805-CDS-H-elongata_contig18272:257..4451622930050.844805-CDS-H-elongata_contig18272:257..445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18272 258..445 +
1691679261.6127832-CDS-H-elongata_contig18272:257..4451691679261.6127832-CDS-H-elongata_contig18272:257..445Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18272 258..445 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18272.4903.1prot_H-elongata_contig18272.4903.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18272 44..445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18272.4903.1

>prot_H-elongata_contig18272.4903.1 ID=prot_H-elongata_contig18272.4903.1|Name=mRNA_H-elongata_contig18272.4903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
RQVINPNFCNVTRPVCGPVIQLQHSTLQSPRKNAILIHQVTVLPNDREIE
HGCEAQHANWPRGARKQAPTGRSIFLLLLK
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mRNA from alignment at H-elongata_contig18272:44..447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18272.4903.1 ID=mRNA_H-elongata_contig18272.4903.1|Name=mRNA_H-elongata_contig18272.4903.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=404bp|location=Sequence derived from alignment at H-elongata_contig18272:44..447+ (Himanthalia elongata Himel1 dioecious)
CGACAAGTTATCAATCCCAACTTCTGCAACGTAACCCGTCCCGTCTGTGG
CCCAAATGGATCAACCACCAACCACCAACAATCAACAACAAGACGGCGAT
GGTATTCGGAGGCCTGTGTATCGCGACCCACTATATTTAGGAACCTTCGT
CTTCCTAGCGTCACCGGTTTGGGCTCCTCATTATTAATGGCTCCTGGGCA
GCATATCACTACTACAGTCATTCAATTACAGCACTCTACTCTGCAGTCCC
CTAGAAAAAACGCCATTTTGATTCATCAGGTGACAGTCCTGCCAAATGAC
CGAGAAATAGAACACGGTTGTGAAGCTCAGCACGCGAACTGGCCCCGAGG
TGCAAGGAAACAAGCACCAACAGGTCGGTCTATTTTTCTTCTTTTGTTGA
AGCC
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Coding sequence (CDS) from alignment at H-elongata_contig18272:44..447+

>mRNA_H-elongata_contig18272.4903.1 ID=mRNA_H-elongata_contig18272.4903.1|Name=mRNA_H-elongata_contig18272.4903.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig18272:44..447+ (Himanthalia elongata Himel1 dioecious)
CGACAAGTTATCAATCCCAACTTCTGCAACGTAACCCGTCCCGTCTGTGG
CCCGACAAGTTATCAATCCCAACTTCTGCAACGTAACCCGTCCCGTCTGT
GGCCCAGTCATTCAATTACAGCACTCTACTCTGCAGTCCCCTAGAAAAAA
CGCCATTTTGATTCATCAGGTGACAGTCCTGCCAAATGACCGAGAAATAG
AACACGGTTGTGAAGCTCAGCACGCGAACTGGCCCCGAGGTGCAAGGAAA
CAAGCACCAACAGGTCGGTCTATTTTTCTTCTTTTGTTGAAGCAGTCATT
CAATTACAGCACTCTACTCTGCAGTCCCCTAGAAAAAACGCCATTTTGAT
TCATCAGGTGACAGTCCTGCCAAATGACCGAGAAATAGAACACGGTTGTG
AAGCTCAGCACGCGAACTGGCCCCGAGGTGCAAGGAAACAAGCACCAACA
GGTCGGTCTATTTTTCTTCTTTTGTTGAAG
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