mRNA_H-elongata_contig182692.4900.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182692.4900.1
Unique NamemRNA_H-elongata_contig182692.4900.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig182692.4900.1 vs. uniprot
Match: D8LLR6_ECTSI (Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLR6_ECTSI)

HSP 1 Score: 213 bits (541), Expect = 1.320e-61
Identity = 110/138 (79.71%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    1 VEGTNVHTGVVARSKLNLIDLAGSERISKTDATGDRLKEAQNINRSLSALGDVISALSQAKAHVPFRNSKLTF---DALSGNSKVLMFVNVSPASYNVTETLCSLNFAARCRSIKLGATSKNQEPAEVARCERVAPGI 405
            VEGTNVHTG VA++KLNLIDLAGSERISKTDATGDRL+EAQNINRSLSALGDVI+AL   K HVPFRNSKLTF   DALSGNSKV+MFVNVSPASYNVTETLCSLNFA RCRS+KLG  +KNQE  EVA+  R +  +
Sbjct:  766 VEGTNVHTGTVAKAKLNLIDLAGSERISKTDATGDRLREAQNINRSLSALGDVIAALGTGKGHVPFRNSKLTFVLQDALSGNSKVMMFVNVSPASYNVTETLCSLNFAKRCRSVKLGQANKNQEAPEVAKYRRASEAL 903          
BLAST of mRNA_H-elongata_contig182692.4900.1 vs. uniprot
Match: A0A7S2BUC2_9STRA (Kinesin-like protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BUC2_9STRA)

HSP 1 Score: 175 bits (443), Expect = 6.660e-52
Identity = 92/133 (69.17%), Postives = 109/133 (81.95%), Query Frame = 1
Query:    7 GTNVHTGVVARSKLNLIDLAGSERISKTDATGDRLKEAQNINRSLSALGDVISALSQAKA-HVPFRNSKLTF---DALSGNSKVLMFVNVSPASYNVTETLCSLNFAARCRSIKLGATSKNQEPAEVARCERV 393
            G N+      RSKL+LIDLAGSER+SKTDATG+RLKEAQNIN+SLSALGDVI+ALS  KA HVP+RNSKLTF   D+L+GNSKV+MF N SPASYN  ET+CSLNFAARCR+++LG   K  E AEVA+ +R+
Sbjct:  127 GRNIQDAGTVRSKLHLIDLAGSERVSKTDATGERLKEAQNINKSLSALGDVINALSGKKAAHVPYRNSKLTFLLQDSLAGNSKVMMFCNFSPASYNCAETMCSLNFAARCRAVELGQAKKGSEGAEVAKLKRM 259          
BLAST of mRNA_H-elongata_contig182692.4900.1 vs. uniprot
Match: A0A7S1XRH5_9STRA (Kinesin-like protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XRH5_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.310e-50
Identity = 94/123 (76.42%), Postives = 108/123 (87.80%), Query Frame = 1
Query:    1 VEGTNVHTGVVARSKLNLIDLAGSERISKTDATGDRLKEAQNINRSLSALGDVISAL-SQAKAHVPFRNSKLTF---DALSGNSKVLMFVNVSPASYNVTETLCSLNFAARCRSIKLGATSKN 357
            V G N+HTG   R+KL+LIDLAGSER+SKTDATGDRLKEAQNINRSLSALGDVI+AL S+ K HVPFRNSKLTF   D+L GNSKV+MFVN+SPA YNV+ETLCSLNFAARCR+++LG  S+N
Sbjct:  614 VLGKNLHTGEEMRAKLHLIDLAGSERVSKTDATGDRLKEAQNINRSLSALGDVIAALASRNKGHVPFRNSKLTFLLQDSLGGNSKVMMFVNISPAVYNVSETLCSLNFAARCRAVELGGASRN 736          
BLAST of mRNA_H-elongata_contig182692.4900.1 vs. uniprot
Match: A0A7S2SB52_9STRA (Kinesin-like protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SB52_9STRA)

HSP 1 Score: 174 bits (440), Expect = 7.000e-48
Identity = 88/125 (70.40%), Postives = 106/125 (84.80%), Query Frame = 1
Query:   25 GVVARSKLNLIDLAGSERISKTDATGDRLKEAQNINRSLSALGDVISALSQAKAHVPFRNSKLTF---DALSGNSKVLMFVNVSPASYNVTETLCSLNFAARCRSIKLGATSKNQEPAEVARCER 390
            G +AR+KL+LIDLAGSER+SKTDATG RLKEAQNIN+SLSALGDVI++L +  +HVPFRNSKLTF   D+L+ NSK+ MFVN SPA YN +ETLCSLNFA RCR+++LGA  KN E AEVAR ++
Sbjct:  638 GAIARAKLHLIDLAGSERVSKTDATGQRLKEAQNINKSLSALGDVIASLGKKASHVPFRNSKLTFLLQDSLTNNSKMQMFVNCSPAEYNASETLCSLNFAKRCRAVELGAAKKNTESAEVARLKK 762          
BLAST of mRNA_H-elongata_contig182692.4900.1 vs. uniprot
Match: A0A7S1CLW4_9STRA (Kinesin-like protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLW4_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.450e-47
Identity = 91/134 (67.91%), Postives = 104/134 (77.61%), Query Frame = 1
Query:    1 VEGTNVHTGVVARSKLNLIDLAGSERISKTDATGDRLKEAQNINRSLSALGDVISALSQAKA----HVPFRNSKLTF---DALSGNSKVLMFVNVSPASYNVTETLCSLNFAARCRSIKLGATSKNQEPAEVAR 381
            V G N   G   R +L+LIDLAGSER+ KT A+G RLKEAQNINRSLSALGDV++AL+ AK     HVPFRNSKLTF   D+LSGNSKVLMFVNVSP  +NV+ETLCSLNFA RCRS++LGA  KN E  E+ R
Sbjct:  388 VRGRNAVDGSTTRGRLHLIDLAGSERVGKTSASGARLKEAQNINRSLSALGDVVAALTSAKGKRAPHVPFRNSKLTFLLQDSLSGNSKVLMFVNVSPVMWNVSETLCSLNFAFRCRSVQLGAAKKNSESGEIQR 521          
BLAST of mRNA_H-elongata_contig182692.4900.1 vs. uniprot
Match: A0A7S4D784_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D784_HETAK)

HSP 1 Score: 161 bits (408), Expect = 1.690e-47
Identity = 90/137 (65.69%), Postives = 105/137 (76.64%), Query Frame = 1
Query:    1 VEGTNVHTGVVARSKLNLIDLAGSERISKTDATGDRLKEAQNINRSLSALGDVISALSQ----AKAHVPFRNSKLTF---DALSGNSKVLMFVNVSPASYNVTETLCSLNFAARCRSIKLGATSKNQEPAEVARCER 390
            VEG N   G    ++LNLIDLAGSERI+KTDA GDRLKEAQ IN SLSALGDVI+AL        +HVPFRNSKLT    D+LSG+SKV+MFVNVSPA YN+TETLCSLNFAARCR++KL    K Q+ A V +C++
Sbjct:   74 VEGENTRDGNKVSARLNLIDLAGSERIAKTDAKGDRLKEAQAINSSLSALGDVIAALGAKGGGGASHVPFRNSKLTHLLQDSLSGDSKVMMFVNVSPAEYNITETLCSLNFAARCRNVKL---KKGQDTAIVQKCKQ 207          
BLAST of mRNA_H-elongata_contig182692.4900.1 vs. uniprot
Match: A0A835ZG01_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG01_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.790e-47
Identity = 83/119 (69.75%), Postives = 97/119 (81.51%), Query Frame = 1
Query:    1 VEGTNVHTGVVARSKLNLIDLAGSERISKTDATGDRLKEAQNINRSLSALGDVISALSQAK--AHVPFRNSKLTF---DALSGNSKVLMFVNVSPASYNVTETLCSLNFAARCRSIKLG 342
            V G N H G   R+KLNLIDLAGSER+ KTDA+GDRLKEAQNINRSLSALGDVI+AL+     +H+PFRNSKLT+   D LSG  K LMF NVSPA+YN+ ET+CSLNFAARCR+++LG
Sbjct:  218 VNGVNAHNGAATRAKLNLIDLAGSERVGKTDASGDRLKEAQNINRSLSALGDVIAALATRSKGSHIPFRNSKLTYLLQDCLSGGGKTLMFCNVSPAAYNLGETICSLNFAARCRAVELG 336          
BLAST of mRNA_H-elongata_contig182692.4900.1 vs. uniprot
Match: A0A7S1XPD2_9STRA (Kinesin-like protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPD2_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.910e-46
Identity = 88/123 (71.54%), Postives = 104/123 (84.55%), Query Frame = 1
Query:    1 VEGTNVHTGVVARSKLNLIDLAGSERISKTDATGDRLKEAQNINRSLSALGDVISAL-SQAKAHVPFRNSKLTF---DALSGNSKVLMFVNVSPASYNVTETLCSLNFAARCRSIKLGATSKN 357
            VE TN+ TG   R KL+L+DLAGSERI+K+ ATG  LKEAQNIN+SLSALGDVI+AL S+ K HVPFRNSKLTF   D+L GNSKV+MFVN+SPA YNV+ETLCSLNFAARCR+++LG  S+N
Sbjct:  610 VESTNLLTGEAYRGKLHLVDLAGSERINKSGATGQALKEAQNINKSLSALGDVIAALASRNKGHVPFRNSKLTFLLQDSLGGNSKVMMFVNISPAVYNVSETLCSLNFAARCRAVELGGASRN 732          
BLAST of mRNA_H-elongata_contig182692.4900.1 vs. uniprot
Match: A0A7S2W0I4_9STRA (Kinesin-like protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0I4_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.400e-45
Identity = 90/128 (70.31%), Postives = 103/128 (80.47%), Query Frame = 1
Query:    7 GTNVHTGVVARSKLNLIDLAGSERISKTDATGDRLKEAQNINRSLSALGDVISALSQAK--AHVPFRNSKLTF---DALSGNSKVLMFVNVSPASYNVTETLCSLNFAARCRSIKLGATSKNQEPAEV 375
            G ++  G    S+LNLIDLAGSER+SKTDATG+RLKEAQNINRSLSALGDVI+AL +     HVPFRNSKLT    D+LSGNSKVLMF N+SPASYNV ET+CSLNFAARCRS++LG   K  E AE+
Sbjct:  584 GRSLTDGSTLTSRLNLIDLAGSERVSKTDATGERLKEAQNINRSLSALGDVINALGKKGKGGHVPFRNSKLTHLLQDSLSGNSKVLMFCNISPASYNVGETMCSLNFAARCRSVELGQARKGGESAEL 711          
BLAST of mRNA_H-elongata_contig182692.4900.1 vs. uniprot
Match: W7U268_9STRA (Kinesin-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U268_9STRA)

HSP 1 Score: 167 bits (422), Expect = 2.390e-45
Identity = 89/123 (72.36%), Postives = 104/123 (84.55%), Query Frame = 1
Query:    1 VEGTNVHTGVVAR-SKLNLIDLAGSERISKTDATGDRLKEAQNINRSLSALGDVISAL-SQAKAHVPFRNSKLTF---DALSGNSKVLMFVNVSPASYNVTETLCSLNFAARCRSIKLGATSK 354
            V G N+H   +A  SKL+LIDLAGSER+SKTDATGDRLKEAQNIN+SLSALGDVI+AL S+ KAH+P+RNSKLTF   D+L GNSKVLMFVN+SPASYNV+ET+CSL FA RCR++ LG   K
Sbjct:  717 VRGENLHDKSLATVSKLHLIDLAGSERLSKTDATGDRLKEAQNINKSLSALGDVINALGSKNKAHIPYRNSKLTFLLQDSLGGNSKVLMFVNISPASYNVSETVCSLQFAGRCRAVALGVAKK 839          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182692.4900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLR6_ECTSI1.320e-6179.71Kinesin-like protein n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S2BUC2_9STRA6.660e-5269.17Kinesin-like protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1XRH5_9STRA1.310e-5076.42Kinesin-like protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2SB52_9STRA7.000e-4870.40Kinesin-like protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1CLW4_9STRA1.450e-4767.91Kinesin-like protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S4D784_HETAK1.690e-4765.69Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835ZG01_9STRA2.790e-4769.75Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A7S1XPD2_9STRA3.910e-4671.54Kinesin-like protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2W0I4_9STRA1.400e-4570.31Kinesin-like protein n=1 Tax=Rhizochromulina marin... [more]
W7U268_9STRA2.390e-4572.36Kinesin-like protein n=2 Tax=Monodopsidaceae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182692contigH-elongata_contig182692:35..1199 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score215.3
Seed ortholog evalue1.7e-53
Seed eggNOG ortholog2880.D8LLR6
KEGG koko:K10406
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionkinesin motor protein-related
Ec32 orthologEc-04_004770.1
Exons3
Model size405
Cds size405
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182692.4900.1prot_H-elongata_contig182692.4900.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182692 35..1199 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.43622-CDS-H-elongata_contig182692:34..1471622930050.43622-CDS-H-elongata_contig182692:34..147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182692 35..147 +
1691679261.4313385-CDS-H-elongata_contig182692:34..1471691679261.4313385-CDS-H-elongata_contig182692:34..147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182692 35..147 +
1622930050.4545505-CDS-H-elongata_contig182692:519..6251622930050.4545505-CDS-H-elongata_contig182692:519..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182692 520..625 +
1691679261.4431298-CDS-H-elongata_contig182692:519..6251691679261.4431298-CDS-H-elongata_contig182692:519..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182692 520..625 +
1622930050.4711597-CDS-H-elongata_contig182692:1013..11991622930050.4711597-CDS-H-elongata_contig182692:1013..1199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182692 1014..1199 +
1691679261.4536946-CDS-H-elongata_contig182692:1013..11991691679261.4536946-CDS-H-elongata_contig182692:1013..1199Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182692 1014..1199 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182692.4900.1

>prot_H-elongata_contig182692.4900.1 ID=prot_H-elongata_contig182692.4900.1|Name=mRNA_H-elongata_contig182692.4900.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
VEGTNVHTGVVARSKLNLIDLAGSERISKTDATGDRLKEAQNINRSLSAL
GDVISALSQAKAHVPFRNSKLTFDALSGNSKVLMFVNVSPASYNVTETLC
SLNFAARCRSIKLGATSKNQEPAEVARCERVAPGI
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mRNA from alignment at H-elongata_contig182692:35..1199+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182692.4900.1 ID=mRNA_H-elongata_contig182692.4900.1|Name=mRNA_H-elongata_contig182692.4900.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1165bp|location=Sequence derived from alignment at H-elongata_contig182692:35..1199+ (Himanthalia elongata Himel1 dioecious)
GTTGAGGGGACCAACGTCCACACTGGGGTGGTCGCGAGGTCGAAGCTCAA CCTGATCGACCTCGCAGGCTCGGAGCGTATCTCGAAGACCGACGCCACGG GAGATCGACTCAAGTAAGACACGCCAAGACACGATCTCTCTCGTTCTCTC TCTCCATCGGTTCCAGTTCAACCATTGTTTTCCGATATTTATAGATATAT AGTAGATATGTATGTTGCCGTTTGTTTATAGGAGAGGTTGGCGGGTTGAC GGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGG CGCCGCGAAACCGCCCCACCCACCGCCCAGCCCCGCGCGCTCCCACCCCC CCTCGGCGGCCNNNNNNNNNNCCGATTTTTATAGAAATATGGTAAATTTG TTTGTTGCCGTTTGTTTATGGGGGGGGTGGGGGGGGTGCGGGCCCCCCCC CCCCCCCTCTCCCCCCCTCTTCCTTTCGCTCTCAGGGAGGCCCAGAACAT CAACCGCAGCCTTAGCGCTCTCGGCGACGTGATCTCCGCGCTGTCGCAGG CCAAGGCGCACGTGCCCTTCCGCAATTCGAAGCTTACCTTCGTGCTGCAG GCGAGGCATGGTTATTAAAAAAAGGGTGTGTAGATCCCGCTGCTGTTGTA GAGCCTAGATCTATTACAAGTGTGACACACAAAGGTAAGTAGGTAAAAAA ACGATATGTCAGCGGGATTCTGCCCCCCTCCCCACACAAACACCCCTTCG ATGCACGTCTGGAGCGCTTTGCTTGATGACACAGGGTTTGATGGGGGGGG GAGGGGGTCGCGCGCCCCCCTCCCATCTTCCCGTCGTATTGTTATGATGT TATGTCATGGTTGTGATTGGATTCTCCAGATCGATGATGGCGATAATGAC GATGATTCAGCCCCTCCCCTCCCTCACCCCCATGGCCATGACCACGGTGG CTTGGCAACTCATACCAAACCCACAACAGGACGCTCTGAGCGGAAACTCG AAGGTGTTGATGTTCGTAAACGTGAGCCCCGCGTCATACAACGTGACGGA GACGCTGTGCTCTCTTAATTTCGCGGCGAGATGCCGGTCCATCAAGCTAG GAGCGACGTCCAAGAACCAGGAGCCCGCGGAGGTTGCCAGGTGCGAGCGG GTCGCCCCTGGTATC
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Coding sequence (CDS) from alignment at H-elongata_contig182692:35..1199+

>mRNA_H-elongata_contig182692.4900.1 ID=mRNA_H-elongata_contig182692.4900.1|Name=mRNA_H-elongata_contig182692.4900.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig182692:35..1199+ (Himanthalia elongata Himel1 dioecious)
GTTGAGGGGACCAACGTCCACACTGGGGTGGTCGCGAGGTCGAAGCTCAA
CCTGATCGACCTCGCAGGCTCGGAGCGTATCTCGAAGACCGACGCCACGG
GAGATCGACTCAAGTTGAGGGGACCAACGTCCACACTGGGGTGGTCGCGA
GGTCGAAGCTCAACCTGATCGACCTCGCAGGCTCGGAGCGTATCTCGAAG
ACCGACGCCACGGGAGATCGACTCAAGGAGGCCCAGAACATCAACCGCAG
CCTTAGCGCTCTCGGCGACGTGATCTCCGCGCTGTCGCAGGCCAAGGCGC
ACGTGCCCTTCCGCAATTCGAAGCTTACCTTCGGAGGCCCAGAACATCAA
CCGCAGCCTTAGCGCTCTCGGCGACGTGATCTCCGCGCTGTCGCAGGCCA
AGGCGCACGTGCCCTTCCGCAATTCGAAGCTTACCTTCGACGCTCTGAGC
GGAAACTCGAAGGTGTTGATGTTCGTAAACGTGAGCCCCGCGTCATACAA
CGTGACGGAGACGCTGTGCTCTCTTAATTTCGCGGCGAGATGCCGGTCCA
TCAAGCTAGGAGCGACGTCCAAGAACCAGGAGCCCGCGGAGGTTGCCAGG
TGCGAGCGGGTCGCCCCTGGTATCGACGCTCTGAGCGGAAACTCGAAGGT
GTTGATGTTCGTAAACGTGAGCCCCGCGTCATACAACGTGACGGAGACGC
TGTGCTCTCTTAATTTCGCGGCGAGATGCCGGTCCATCAAGCTAGGAGCG
ACGTCCAAGAACCAGGAGCCCGCGGAGGTTGCCAGGTGCGAGCGGGTCGC
CCCTGGTATC
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