mRNA_H-elongata_contig182634.4899.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182634.4899.1
Unique NamemRNA_H-elongata_contig182634.4899.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig182634.4899.1 vs. uniprot
Match: D8LKU0_ECTSI (Dymeclin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKU0_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 7.030e-20
Identity = 54/89 (60.67%), Postives = 59/89 (66.29%), Query Frame = 1 
Query:    1 LRQANPGFLRAAVVRSDADALLLPLLRTLNDCPSSAVARGERDHPRRQQQQ-----NVRTSSPTLYVPAIVVLLYSQDAAFDRQSFRQV 252
            L QANPGFLRAAVVRSDADALLLPLLRTL+DC S                       V  S P LYVPAIV+LL+ QD+AF+RQSFRQV
Sbjct:  241 LLQANPGFLRAAVVRSDADALLLPLLRTLHDCASPEQXXXXXXXXXXXXXXXXXXVGVDPSPPALYVPAIVLLLFCQDSAFNRQSFRQV 329
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BLAST of mRNA_H-elongata_contig182634.4899.1 vs. uniprot
Match: A0A6H5L5B7_9PHAE (Dymeclin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5B7_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.500e-19
Identity = 53/90 (58.89%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 LRQANPGFLRAAVVRSDADALLLPLLRTLNDCPSSA------VARGERDHPRRQQQQNVRTSSPTLYVPAIVVLLYSQDAAFDRQSFRQV 252
            L QANPGFLRAAVVRSDADALLLPLLRTL+DC S                           S P+LYVPAIV+LL+ QD+AF+RQSFRQV
Sbjct:  677 LLQANPGFLRAAVVRSDADALLLPLLRTLHDCASPEQXXXXXXXXXXXXXXXXXXXXXXXPSPPSLYVPAIVLLLFCQDSAFNRQSFRQV 766
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182634.4899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKU0_ECTSI7.030e-2060.67Dymeclin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5L5B7_9PHAE2.500e-1958.89Dymeclin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182634contigH-elongata_contig182634:70..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2.8e-17
Seed eggNOG ortholog2880.D8LKU0
Preferred nameDYM
GOsGO:0001501,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006996,GO:0007030,GO:0007275,GO:0008150,GO:0009987,GO:0010256,GO:0012505,GO:0016043,GO:0019899,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0060348,GO:0071840
EggNOG free text desc.Golgi organization
EggNOG OGsKOG2225@1,KOG2225@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDymeclin
Ec32 orthologEc-11_005530.1
Exons1
Model size252
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.3898497-CDS-H-elongata_contig182634:69..3211622930050.3898497-CDS-H-elongata_contig182634:69..321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182634 70..321 +
1691679261.4205084-CDS-H-elongata_contig182634:69..3211691679261.4205084-CDS-H-elongata_contig182634:69..321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182634 70..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182634.4899.1prot_H-elongata_contig182634.4899.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182634 70..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182634.4899.1

>prot_H-elongata_contig182634.4899.1 ID=prot_H-elongata_contig182634.4899.1|Name=mRNA_H-elongata_contig182634.4899.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
LRQANPGFLRAAVVRSDADALLLPLLRTLNDCPSSAVARGERDHPRRQQQ
QNVRTSSPTLYVPAIVVLLYSQDAAFDRQSFRQV
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mRNA from alignment at H-elongata_contig182634:70..321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182634.4899.1 ID=mRNA_H-elongata_contig182634.4899.1|Name=mRNA_H-elongata_contig182634.4899.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig182634:70..321+ (Himanthalia elongata Himel1 dioecious)
CTTCGACAGGCCAACCCAGGTTTTCTGAGAGCTGCTGTGGTGCGCTCGGA
TGCGGACGCCCTTCTGCTTCCGCTGCTCCGCACGCTGAACGACTGCCCCT
CATCTGCTGTCGCGCGCGGTGAACGCGATCACCCGCGAAGGCAGCAACAG
CAGAACGTGCGAACTTCGTCTCCGACGCTGTACGTACCCGCCATTGTGGT
TCTCCTTTACTCCCAGGACGCCGCCTTCGATCGGCAGTCATTCCGCCAGG
TG
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Coding sequence (CDS) from alignment at H-elongata_contig182634:70..321+

>mRNA_H-elongata_contig182634.4899.1 ID=mRNA_H-elongata_contig182634.4899.1|Name=mRNA_H-elongata_contig182634.4899.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig182634:70..321+ (Himanthalia elongata Himel1 dioecious)
CTTCGACAGGCCAACCCAGGTTTTCTGAGAGCTGCTGTGGTGCGCTCGGA
TGCGGACGCCCTTCTGCTTCCGCTGCTCCGCACGCTGAACGACTGCCCCT
CATCTGCTGTCGCGCGCGGTGAACGCGATCACCCGCGAAGGCAGCAACAG
CAGAACGTGCGAACTTCGTCTCCGACGCTGTACGTACCCGCCATTGTGGT
TCTCCTTTACTCCCAGGACGCCGCCTTCGATCGGCAGTCATTCCGCCAGG
TGCTTCGACAGGCCAACCCAGGTTTTCTGAGAGCTGCTGTGGTGCGCTCG
GATGCGGACGCCCTTCTGCTTCCGCTGCTCCGCACGCTGAACGACTGCCC
CTCATCTGCTGTCGCGCGCGGTGAACGCGATCACCCGCGAAGGCAGCAAC
AGCAGAACGTGCGAACTTCGTCTCCGACGCTGTACGTACCCGCCATTGTG
GTTCTCCTTTACTCCCAGGACGCCGCCTTCGATCGGCAGTCATTCCGCCA
GGTG
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