mRNA_H-elongata_contig182530.4897.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182530.4897.1
Unique NamemRNA_H-elongata_contig182530.4897.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig182530.4897.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 3.480e-22
Identity = 58/120 (48.33%), Postives = 77/120 (64.17%), Query Frame = 1
Query:    1 LQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPNTRRSVSGGAVMMAGGVISWFSRVQKVTAAASSESVYVALAEMVNELRFLRQVKEFMTPS-IDVAIKIHEDNEGAIRMAKTRFS 357
            L Y +RT  LGI++      G  L A+VDADY +    RRSVSGG VM AGG I+WFS+ Q     ++++S YVA+A+M  E+ FLRQV  FM P  +   I ++EDNEGAI++AK   S
Sbjct:  578 LGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPIS 697          
BLAST of mRNA_H-elongata_contig182530.4897.1 vs. uniprot
Match: A0A6H5KD14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD14_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.910e-21
Identity = 52/118 (44.07%), Postives = 75/118 (63.56%), Query Frame = 1
Query:    1 LQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPNTRRSVSGGAVMMAGGVISWFSRVQKVTAAASSESVYVALAEMVNELRFLRQVKEFMTPSIDV-AIKIHEDNEGAIRMAKTR 351
            L Y+ RT  +GIT+      G  +  +VD DY +    RRSVSGG VM  GG ++WFSR +K    +++E+ YVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++A TR
Sbjct:   75 LGYVCRTNWMGITFERGVVTGMSMQVFVDPDYASKAADRRSVSGGLVMREGGGVTWFSRTKKCVTLSTTEAEYVAIADVMKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIAHTR 192          
BLAST of mRNA_H-elongata_contig182530.4897.1 vs. uniprot
Match: A0A6H5L5J6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5J6_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.630e-21
Identity = 56/121 (46.28%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 LQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPNTRRSVSGGAVMMAGGVISWFSRVQKVTAAASSESVYVALAEMVNELRFLRQVKEFMTPS-IDVAIKIHEDNEGAIRMAKTRFSS 360
            L Y  RT  LGI++      G  L A+VDADY +    RRSVSGG VM AGG I+WFS+ Q+    +++++ YVA+A+M   + FLRQV  FM P  +     +HEDNEGAI++AK   S+
Sbjct:  392 LGYAVRTSSLGISFQRRTVSGFSLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQECVTLSTTQAEYVAMADMGKVILFLRQVWRFMLPKELRPCSPLHEDNEGAIQIAKHPISN 512          
BLAST of mRNA_H-elongata_contig182530.4897.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.030e-20
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 LQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPNTRRSVSGGAVMMAGGVISWFSRVQKVTAAASSESVYVALAEMVNELRFLRQVKEFMTPSIDV-AIKIHEDNEGAIRMA 342
            L Y+ RT  +GIT+      G  +  +VDADY +    RRSVSGG VM  GG ++WFSR QK    +++E+ YVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++A
Sbjct:  144 LGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIA 258          
BLAST of mRNA_H-elongata_contig182530.4897.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 3.060e-20
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 LQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPNTRRSVSGGAVMMAGGVISWFSRVQKVTAAASSESVYVALAEMVNELRFLRQVKEFMTPSIDV-AIKIHEDNEGAIRMA 342
            L Y+ RT  +GIT+      G  +  +VDADY +    RRSVSGG VM  GG ++WFSR QK    +++E+ YVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++A
Sbjct:  261 LGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIA 375          
BLAST of mRNA_H-elongata_contig182530.4897.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 5.150e-20
Identity = 51/114 (44.74%), Postives = 73/114 (64.04%), Query Frame = 1
Query:    1 LQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPNTRRSVSGGAVMMAGGVISWFSRVQKVTAAASSESVYVALAEMVNELRFLRQVKEFMTPSIDV-AIKIHEDNEGAIRM 339
            L Y+ RT  +GIT+      G  +  +VDADY +    RRSVSGG VM  GG ++WFSR QK    +++E+ YVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++
Sbjct:  199 LGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQI 312          
BLAST of mRNA_H-elongata_contig182530.4897.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 8.920e-20
Identity = 53/115 (46.09%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 LQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPNTRRSVSGGAVMMAGGVISWFSRVQKVTAAASSESVYVALAEMVNELRFLRQVKEFMTPSIDV-AIKIHEDNEGAIRMA 342
            L Y+ RT  +GIT+      G  +  +VDADY +    RRSVSGG VM  GG ++WFSR QK     ++ES YVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++A
Sbjct:  651 LGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLYTTESEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIA 765          
BLAST of mRNA_H-elongata_contig182530.4897.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 9.250e-20
Identity = 52/115 (45.22%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 LQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPNTRRSVSGGAVMMAGGVISWFSRVQKVTAAASSESVYVALAEMVNELRFLRQVKEFMTPSIDV-AIKIHEDNEGAIRMA 342
            L Y+ RT  +GIT+      G  +  +VDADY +    RRSVSGG VM  GG ++WFSR QK    +++E+ YVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++A
Sbjct: 1295 LGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIA 1409          
BLAST of mRNA_H-elongata_contig182530.4897.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.530e-20
Identity = 52/115 (45.22%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    1 LQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPNTRRSVSGGAVMMAGGVISWFSRVQKVTAAASSESVYVALAEMVNELRFLRQVKEFMTPSIDV-AIKIHEDNEGAIRMA 342
            L Y+ RT  +GIT+      G  +  +VDADY      RRSVSGG VM  GG ++WFSR QK    +++E+ YVA+A+++ E+ FLRQV  FM P   +  I + EDN+GAI++A
Sbjct:  116 LGYVRRTSWMGITFERGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVA 230          
BLAST of mRNA_H-elongata_contig182530.4897.1 vs. uniprot
Match: A0A6H5K7P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P1_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.020e-19
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    7 YLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPNTRRSVSGGAVMMAGGVISWFSRVQKVTAAASSESVYVALAEMVNELRFLRQVKEFMTPSIDV-AIKIHEDNEGAIRM 339
            YL RT  +GIT+      G     +VDADY +    RRSVSGG VM  GG ++WFSR+QK  + +++ES YVA+A++  E+ FLRQV  FM P   +  I + EDN+GAI++
Sbjct:  159 YLRRTSWMGITFERGVVTGMSTRVFVDADYASKAADRRSVSGGLVMCGGGCVTWFSRMQKCFSLSTTESEYVAIADVSKEVLFLRQVCRFMLPDASMPCIPVFEDNQGAIKI 270          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182530.4897.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWA6_9PHAE3.480e-2248.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KD14_9PHAE2.910e-2144.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5J6_9PHAE3.630e-2146.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE1.030e-2045.22Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEF2_9PHAE3.060e-2045.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L4G9_9PHAE5.150e-2044.74Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQN5_9PHAE8.920e-2046.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JHY5_9PHAE9.250e-2045.22Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K8K2_9PHAE9.530e-2045.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7P1_9PHAE1.020e-1946.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182530contigH-elongata_contig182530:375..740 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue3.5e-13
Seed eggNOG ortholog67593.Physo133508
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930050.2993314-CDS-H-elongata_contig182530:374..7401622930050.2993314-CDS-H-elongata_contig182530:374..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182530 375..740 +
1691679261.3909125-CDS-H-elongata_contig182530:374..7401691679261.3909125-CDS-H-elongata_contig182530:374..740Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182530 375..740 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182530.4897.1prot_H-elongata_contig182530.4897.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182530 375..740 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182530.4897.1

>prot_H-elongata_contig182530.4897.1 ID=prot_H-elongata_contig182530.4897.1|Name=mRNA_H-elongata_contig182530.4897.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
LQYLWRTRDLGITYGGEPGGGTKLSAWVDADYGTCPNTRRSVSGGAVMMA
GGVISWFSRVQKVTAAASSESVYVALAEMVNELRFLRQVKEFMTPSIDVA
IKIHEDNEGAIRMAKTRFSSR*
back to top

mRNA from alignment at H-elongata_contig182530:375..740+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182530.4897.1 ID=mRNA_H-elongata_contig182530.4897.1|Name=mRNA_H-elongata_contig182530.4897.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at H-elongata_contig182530:375..740+ (Himanthalia elongata Himel1 dioecious)
CTGCAATATTTATGGCGCACTCGGGACCTCGGGATCACCTACGGAGGGGA ACCGGGGGGGGGGACCAAGTTATCAGCGTGGGTCGATGCAGACTATGGCA CCTGCCCAAACACGCGTCGCTCAGTGTCGGGAGGGGCGGTGATGATGGCT GGCGGGGTCATTAGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGC GTCGTCCGAATCGGTTTACGTCGCGCTGGCTGAGATGGTAAACGAGTTGC GTTTCCTACGACAGGTCAAGGAGTTCATGACCCCCTCAATCGACGTCGCC ATCAAGATACACGAGGACAACGAAGGTGCAATCAGGATGGCGAAAACCCG CTTCAGCAGTCGATGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig182530:375..740+

>mRNA_H-elongata_contig182530.4897.1 ID=mRNA_H-elongata_contig182530.4897.1|Name=mRNA_H-elongata_contig182530.4897.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig182530:375..740+ (Himanthalia elongata Himel1 dioecious)
CTGCAATATTTATGGCGCACTCGGGACCTCGGGATCACCTACGGAGGGGA
ACCGGGGGGGGGGACCAAGTTATCAGCGTGGGTCGATGCAGACTATGGCA
CCTGCCCAAACACGCGTCGCTCAGTGTCGGGAGGGGCGGTGATGATGGCT
GGCGGGGTCATTAGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGC
GTCGTCCGAATCGGTTTACGTCGCGCTGGCTGAGATGGTAAACGAGTTGC
GTTTCCTACGACAGGTCAAGGAGTTCATGACCCCCTCAATCGACGTCGCC
ATCAAGATACACGAGGACAACGAAGGTGCAATCAGGATGGCGAAAACCCG
CTTCAGCAGTCGATGACTGCAATATTTATGGCGCACTCGGGACCTCGGGA
TCACCTACGGAGGGGAACCGGGGGGGGGGACCAAGTTATCAGCGTGGGTC
GATGCAGACTATGGCACCTGCCCAAACACGCGTCGCTCAGTGTCGGGAGG
GGCGGTGATGATGGCTGGCGGGGTCATTAGTTGGTTCTCACGAGTGCAAA
AGGTAACGGCGGCGGCGTCGTCCGAATCGGTTTACGTCGCGCTGGCTGAG
ATGGTAAACGAGTTGCGTTTCCTACGACAGGTCAAGGAGTTCATGACCCC
CTCAATCGACGTCGCCATCAAGATACACGAGGACAACGAAGGTGCAATCA
GGATGGCGAAAACCCGCTTCAGCAGTCGATGA
back to top