mRNA_H-elongata_contig18245.4893.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18245.4893.1
Unique NamemRNA_H-elongata_contig18245.4893.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18245.4893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18245contigH-elongata_contig18245:1098..2276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size723
Cds size723
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.9226027-CDS-H-elongata_contig18245:1097..12801622930049.9226027-CDS-H-elongata_contig18245:1097..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18245 1098..1280 +
1691679261.2495704-CDS-H-elongata_contig18245:1097..12801691679261.2495704-CDS-H-elongata_contig18245:1097..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18245 1098..1280 +
1622930050.023012-CDS-H-elongata_contig18245:1736..22761622930050.023012-CDS-H-elongata_contig18245:1736..2276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18245 1737..2276 +
1691679261.2682505-CDS-H-elongata_contig18245:1736..22761691679261.2682505-CDS-H-elongata_contig18245:1736..2276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18245 1737..2276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18245.4893.1prot_H-elongata_contig18245.4893.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18245 1098..2276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18245.4893.1

>prot_H-elongata_contig18245.4893.1 ID=prot_H-elongata_contig18245.4893.1|Name=mRNA_H-elongata_contig18245.4893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=241bp
MEESTCDGDRNSHSVEFAPSLSWWMMKSLWHAKLSLVDTFLLEEGHLIQW
YFTSTSGQVLKRANKRLNWEDLFKFFTRVLRTSCLGNQKDTTWRPGVIAI
AQRLKHGRTYPVMLTAADLKSLREKHNACLLDEIVAIQPYFTKQPFVGCG
VFETEFERMGQHRAARAALATFELVRWPEEDTPWFKDIESFSDSSHPESR
SFPHRNGDGSSKRVYGVVHRTLAVTTKAIVEHVENNVRWS*
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mRNA from alignment at H-elongata_contig18245:1098..2276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18245.4893.1 ID=mRNA_H-elongata_contig18245.4893.1|Name=mRNA_H-elongata_contig18245.4893.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1179bp|location=Sequence derived from alignment at H-elongata_contig18245:1098..2276+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAAAGTACATGCGATGGTGATCGCAATAGTCATTCCGTCGAGTT
TGCGCCGTCGCTATCGTGGTGGATGATGAAAAGCCTGTGGCACGCAAAAC
TATCCTTGGTCGACACATTCCTGCTGGAAGAAGGCCATCTCATACAATGG
TATTTTACCTCTACCTCTGGACAAGTACTTAAGGTGATAAACACCGTCAA
TTATTGCCTTAGTTCTTCCCCTATTCATCGGTCCTGGTCGAGATAACTTC
GGAGCATGTTTTCCAATCAGTGTGTTTTTGTGACCCCGTGTCCAGCCTCC
TACCCCTCAATCACAAAGACTGCATCCAGGCCGATTAGCTACACACACCG
AAAATATCAATACCTCACAGCTTATGGAACTAGAGACAGACGGTGGGCTT
GCCGTGCTGGCAAAGGTCGTTTCTTTTGTACAGGCTACGAGGGGGAACCA
TCAAAACATTTTCAGTCACGGTAAATCTACATGCACCTCGCCTGACGACG
TGAGCTCCCTGAATCATCACTTGAGCGTCATAAATAATCAGAACGATAAA
TCATATCTATATCTAAAGCTACATGTTCAATACCGTCGTGCACTTGCCTC
CCCTAACGCTCGACTTTTGTTTGGGTTCATCCCCTTTAGCGTGCAAACAA
GCGGTTGAATTGGGAAGACCTCTTCAAGTTTTTCACGCGAGTCCTGAGAA
CCAGCTGCTTGGGGAATCAGAAGGACACTACGTGGAGGCCTGGGGTAATT
GCTATAGCACAGCGGCTCAAGCACGGTCGTACATATCCCGTGATGCTGAC
AGCCGCTGACCTAAAGTCTCTTCGAGAAAAGCACAATGCCTGCTTGTTGG
ACGAGATCGTGGCAATCCAGCCGTATTTTACGAAACAACCGTTTGTCGGG
TGTGGGGTGTTTGAGACAGAGTTCGAGCGCATGGGGCAACATCGTGCTGC
GCGGGCTGCGCTTGCGACCTTCGAGTTAGTCCGATGGCCAGAAGAAGATA
CGCCGTGGTTCAAAGATATCGAGTCTTTCTCTGACAGCTCGCACCCGGAA
AGTCGGAGCTTCCCGCATCGGAATGGAGATGGCTCCTCCAAGCGAGTGTA
CGGCGTTGTTCATCGTACGCTGGCCGTAACGACCAAGGCCATAGTGGAGC
ACGTCGAAAACAATGTGAGATGGTCGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig18245:1098..2276+

>mRNA_H-elongata_contig18245.4893.1 ID=mRNA_H-elongata_contig18245.4893.1|Name=mRNA_H-elongata_contig18245.4893.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1446bp|location=Sequence derived from alignment at H-elongata_contig18245:1098..2276+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGAAAGTACATGCGATGGTGATCGCAATAGTCATTCCGTCGAGTT
TGCGCCGTCGCTATCGTGGTGGATGATGAAAAGCCTGTGGCACGCAAAAC
TATCCTTGGTCGACACATTCCTGCTGGAAGAAGGCCATCTCATACAATGG
TATTTTACCTCTACCTCTGGACAAGTACTTAAGATGGAAGAAAGTACATG
CGATGGTGATCGCAATAGTCATTCCGTCGAGTTTGCGCCGTCGCTATCGT
GGTGGATGATGAAAAGCCTGTGGCACGCAAAACTATCCTTGGTCGACACA
TTCCTGCTGGAAGAAGGCCATCTCATACAATGGTATTTTACCTCTACCTC
TGGACAAGTACTTAAGCGTGCAAACAAGCGGTTGAATTGGGAAGACCTCT
TCAAGTTTTTCACGCGAGTCCTGAGAACCAGCTGCTTGGGGAATCAGAAG
GACACTACGTGGAGGCCTGGGGTAATTGCTATAGCACAGCGGCTCAAGCA
CGGTCGTACATATCCCGTGATGCTGACAGCCGCTGACCTAAAGTCTCTTC
GAGAAAAGCACAATGCCTGCTTGTTGGACGAGATCGTGGCAATCCAGCCG
TATTTTACGAAACAACCGTTTGTCGGGTGTGGGGTGTTTGAGACAGAGTT
CGAGCGCATGGGGCAACATCGTGCTGCGCGGGCTGCGCTTGCGACCTTCG
AGTTAGTCCGATGGCCAGAAGAAGATACGCCGTGGTTCAAAGATATCGAG
TCTTTCTCTGACAGCTCGCACCCGGAAAGTCGGAGCTTCCCGCATCGGAA
TGGAGATGGCTCCTCCAAGCGAGTGTACGGCGTTGTTCATCGTACGCTGG
CCGTAACGACCAAGGCCATAGTGGAGCACGTCGAAAACAATGTGAGATGG
TCGTAACGTGCAAACAAGCGGTTGAATTGGGAAGACCTCTTCAAGTTTTT
CACGCGAGTCCTGAGAACCAGCTGCTTGGGGAATCAGAAGGACACTACGT
GGAGGCCTGGGGTAATTGCTATAGCACAGCGGCTCAAGCACGGTCGTACA
TATCCCGTGATGCTGACAGCCGCTGACCTAAAGTCTCTTCGAGAAAAGCA
CAATGCCTGCTTGTTGGACGAGATCGTGGCAATCCAGCCGTATTTTACGA
AACAACCGTTTGTCGGGTGTGGGGTGTTTGAGACAGAGTTCGAGCGCATG
GGGCAACATCGTGCTGCGCGGGCTGCGCTTGCGACCTTCGAGTTAGTCCG
ATGGCCAGAAGAAGATACGCCGTGGTTCAAAGATATCGAGTCTTTCTCTG
ACAGCTCGCACCCGGAAAGTCGGAGCTTCCCGCATCGGAATGGAGATGGC
TCCTCCAAGCGAGTGTACGGCGTTGTTCATCGTACGCTGGCCGTAACGAC
CAAGGCCATAGTGGAGCACGTCGAAAACAATGTGAGATGGTCGTAA
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