mRNA_H-elongata_contig18236.4890.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18236.4890.1
Unique NamemRNA_H-elongata_contig18236.4890.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: D8LIV3_ECTSI (HMA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV3_ECTSI)

HSP 1 Score: 311 bits (796), Expect = 8.350e-96
Identity = 162/213 (76.06%), Postives = 179/213 (84.04%), Query Frame = 1
Query:   61 LEMPLEGSIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
            LEMP +GS  A+SG+GLSCTV GL+V VGSP YIE+ +G P   L ELV   L+SSGRTVV+A+IE + A + GLVDTLRP A+ V SEL  MGLEVWMLTGDNRRAA EVARR GLP DRVCAEVLPGDKASK+EELQ+DGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSS+WDV  SLDL R I+ R+R NYFWA L
Sbjct:  636 LEMPEDGSTTAVSGKGLSCTVRGLKVCVGSPGYIEREIGSPAGPLLELVVRELQSSGRTVVIAAIERHVAGVFGLVDTLRPEAKGVVSELTGMGLEVWMLTGDNRRAAHEVARRAGLPPDRVCAEVLPGDKASKIEELQEDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSIWDVFTSLDLCRTILARVRYNYFWALL 848          
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A6H5JA85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA85_9PHAE)

HSP 1 Score: 270 bits (690), Expect = 3.230e-82
Identity = 152/234 (64.96%), Postives = 174/234 (74.36%), Query Frame = 1
Query:   61 LEMPLEGSIVALSGRGLSCTVAGLEVR---------------VGSPSYI--EKALGKPLASLPEL----VASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
            LEMP +GS  A+SG+GLSCTV GL+ R               + SPS     K+   P+ +L  L    ++   +SSGRTVV+ +IE + A + GLVDTLRP A+ V SEL  MGLEVWMLTGDNRRAA EVARR G+P  RVCAEVLPGDKASK+EELQ+DGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSS+WDV  SLDL R I+ R+R NYFWA L
Sbjct:  556 LEMPEDGSTAAVSGKGLSCTVRGLKARRERQNPLRPYLPVHLLLSPSKSPPSKSAEHPVPTLLVLFVWVLSGLFKSSGRTVVITAIERHVAGVFGLVDTLRPEAKGVVSELTGMGLEVWMLTGDNRRAAHEVARRAGIPPHRVCAEVLPGDKASKIEELQEDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSIWDVFTSLDLCRTILARVRYNYFWALL 789          
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A7J4IHP5_9EURY (HAD-IC family P-type ATPase n=1 Tax=Methanoregulaceae archaeon TaxID=2485498 RepID=A0A7J4IHP5_9EURY)

HSP 1 Score: 191 bits (485), Expect = 8.780e-57
Identity = 104/222 (46.85%), Postives = 145/222 (65.32%), Query Frame = 1
Query:   31 ASADANSLQELEMPLEGSIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAF 696
            A  DA  ++ + +P   +  +++GRG++ TV G EV VGS + +E+  G  L    E     LE +GRT V+ +  G    +L + D ++P   +    L+ MGL V M+TGDNRR A  +AR VG+  DRV AEVLPG+KA ++  LQ+ G+ VA +GDGINDAPALATAD+GIA+G GTDVA+ES DVVL+ S L D + +++L R ++ RIR N FWAF
Sbjct:   11 AIVDAAGMEGVAVPAATAFASVTGRGVAATVDGREVLVGSRALLEER-GVALPDGAEATLRALEEAGRTAVLVAAGGEATGILAVADPVKPTTARAVEALKTMGLGVAMVTGDNRRTADAIARSVGI--DRVLAEVLPGEKADEIRRLQEGGERVAYVGDGINDAPALATADLGIAIGSGTDVAIESGDVVLVRSDLLDAVAAIELGRAVMRRIRQNIFWAF 229          
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A2W4KLY3_9FIRM (Copper-exporting P-type ATPase n=2 Tax=Firmicutes TaxID=1239 RepID=A0A2W4KLY3_9FIRM)

HSP 1 Score: 198 bits (504), Expect = 2.600e-55
Identity = 115/242 (47.52%), Postives = 157/242 (64.88%), Query Frame = 1
Query:   25 LDASADANSLQELEMPLEGSIV-----------------ALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
            L ASA+ NS    E PL  +IV                 A+ G G+  TV G E+ VG+   +E+  G  LA + + +   LE  G+TV++A+++G  A L+ + DT++  A +  +ELQRMGLEVWM+TGDN R A+ +AR+ G+P +RV AEVLP +KA KV ELQ  G  VAM+GDGINDAPALATADVGIA+G GTDVA+E+A+V LM   L  ++ ++DLSR  + +IR N FWA +
Sbjct:  509 LVASAEKNS----EHPLASAIVERARQEGLQLEEPSDFEAIPGHGVRATVGGRELYVGNRRLMERQ-GIDLAGIRDRL-EALEDQGKTVMMATVDGRLAGLIAVADTIKENAPEAIAELQRMGLEVWMITGDNARTARAIARQAGIPPERVLAEVLPAEKAGKVRELQARGLKVAMVGDGINDAPALATADVGIAIGTGTDVAIEAANVTLMRGDLRGLVAAIDLSRATLAKIRQNMFWALI 744          
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A7S3F6U4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F6U4_9EUKA)

HSP 1 Score: 181 bits (460), Expect = 8.790e-53
Identity = 107/228 (46.93%), Postives = 143/228 (62.72%), Query Frame = 1
Query:   25 LDASADANSLQELEMPLEGSIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIE----GYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAF 696
            ++A AD+  +  +E P E    A +G G+ C V G+ V +G+ + + KA G  L S  +  A+ LE  GRT+V+ + +      P   L L DTLRP +  V  +L   G++VWM++GDN RAA   A   G+P DRV A VLP  KA  V  LQ+    V  +GDG+NDAPALA ADVGIAVG GTDVA+E+ADVVLM   L DV V++DL+RV++ RIR N+ WAF
Sbjct:    8 INAHADSAGIATVE-PTE--CTASAGLGMRCQVEGVRVVLGNRAMMAKA-GLELTSAQKAAATALEHQGRTLVLLAADLGAFAAPLGCLALSDTLRPESPHVVQKLHDFGIQVWMVSGDNERAAHSFAAAAGIPRDRVVAGVLPAGKAEVVRGLQEANMTVGFVGDGVNDAPALAQADVGIAVGSGTDVAIETADVVLMRDDLADVPVAIDLARVVMARIRLNFCWAF 231          
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A4P7GVE6_9FIRM (Copper-exporting P-type ATPase n=1 Tax=Thermaerobacter sp. FW80 TaxID=2546351 RepID=A0A4P7GVE6_9FIRM)

HSP 1 Score: 192 bits (487), Expect = 9.270e-53
Identity = 109/229 (47.60%), Postives = 150/229 (65.50%), Query Frame = 1
Query:   13 RDAGLDASADANSLQELEMPLEGSIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
            R+AGLD    A            +  A+ G G++  VAG +V VG+   +E A G  + +  + +A+ LE  G+TV++ +++G  A L+ + DTL+  A +  + L  MGLEVWM+TGDN R A+ VAR+ G+P +RV AEVLP DKA+KV ELQ+ G  VAM+GDGINDAPALA ADVGIA+G GTDVA+E+ADV LM   L  +  ++DLSR  + +IR N FWA +
Sbjct:  598 REAGLDLDEPA------------AFEAVPGHGVTAQVAGRQVAVGNRRLME-ARGVAVDAAADRLAA-LEEQGKTVMLVAVDGRLAGLIAVADTLKETAPEAVAALHEMGLEVWMITGDNARTARAVARQAGIPEERVLAEVLPADKAAKVRELQERGLKVAMVGDGINDAPALAAADVGIAIGTGTDVAIEAADVTLMRGDLRTLAAAIDLSRATLAKIRQNLFWALI 812          
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: T0PRH4_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PRH4_SAPDV)

HSP 1 Score: 183 bits (464), Expect = 1.120e-52
Identity = 103/216 (47.69%), Postives = 145/216 (67.13%), Query Frame = 1
Query:   61 LEMPLEG--SIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASC---LESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWA 693
            L  PLE   +  A+SG+G+S  ++   V +G+  Y+E        ++P  VA+    LE +G+TV+   I     AL+G+ D  RP A+Q  + L  +GL+V+M+TGDNRR A  VA ++GLP+  V AEVLP +K +KV+ELQ  G+ VAM+GDGINDAPALA AD+G+A+G GTD+A+E+A +VLM S L DV+ +LDLSR I  RI+ N+ WA
Sbjct:   85 LAKPLEQPEAFTAVSGKGISVELSKAVVHLGNLDYMEDCG----MAVPAAVANHRLRLEEAGKTVIYMGICDSVVALIGISDAPRPEAKQTIAHLHALGLDVYMVTGDNRRTAHWVAAQIGLPSHHVMAEVLPANKTAKVQELQAQGRIVAMVGDGINDAPALAQADLGVAIGAGTDIAIETAQMVLMKSKLQDVVTALDLSRTIYRRIQLNFVWA 296          
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: UPI001FA709C4 (heavy metal translocating P-type ATPase n=1 Tax=Desulfurispora thermophila TaxID=265470 RepID=UPI001FA709C4)

HSP 1 Score: 191 bits (484), Expect = 1.380e-52
Identity = 116/243 (47.74%), Postives = 150/243 (61.73%), Query Frame = 1
Query:   22 GLDASADANSLQELEMPLEGSIV-----------------ALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
            GL ASA++ S    E PL  ++V                 AL G GL   V GLEV VG P +I +  G  +A     VA+ LE +G+T V   +EG  A LL L DTL+P A  V +EL R+G+EVWM+TGDN+R AQ VAR+ G+    V A VLPG+KA KV  L++ G  V M+GDGINDAPALA ADVG A+G GTD+A+E+A V L+G SL  V+ ++ LSR  +  I+ N FWAF+
Sbjct:  512 GLAASAESTS----EHPLAAAVVEYARQQGSQIVAPEEFQALPGFGLQARVQGLEVLVGKPDFIVER-GYAVAQWEAQVAT-LEQAGKTAVFVVVEGQVAGLLALADTLKPEAASVVAELHRLGMEVWMITGDNQRTAQAVARQAGI--QNVLAGVLPGEKADKVASLKERGLVVGMVGDGINDAPALAVADVGFALGSGTDIAIETAPVTLLGGSLQGVVNAIKLSRATLRNIKQNLFWAFI 746          
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: E6SGV6_THEM7 (Copper-exporting P-type ATPase n=2 Tax=Thermaerobacter TaxID=73918 RepID=E6SGV6_THEM7)

HSP 1 Score: 191 bits (486), Expect = 1.820e-52
Identity = 110/229 (48.03%), Postives = 152/229 (66.38%), Query Frame = 1
Query:   13 RDAGLDASADANSLQELEMPLEGSIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
            R+AGLD       L E E     S  A+ G G+   +AG +V VG+   +E A G  + +    +A+ LE  G+TV++ +++G  A L+ + DTL+  A +  + L  MGLEVWM+TGDN R A+ VAR+ G+PA+RV AEVLP DKA+KV ELQ  G+ VAM+GDGINDAPALA ADVGIA+G GTDVA+E++DV LM   L  ++ +++LSR  + +IR N FWA +
Sbjct:  672 REAGLD-------LDEPE-----SFEAIPGHGVQARLAGRDVVVGNRRLME-ARGVAVDAAANRLAA-LEEQGKTVMLVAVDGRLAGLIAVADTLKETAPEAVAALHEMGLEVWMITGDNARTARAVARQAGIPAERVLAEVLPADKAAKVRELQARGRKVAMVGDGINDAPALAAADVGIAIGTGTDVAIETSDVTLMRGDLRGLVAAIELSRATLGKIRQNLFWALI 886          
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A843K4Z2_9ARCH (Copper-translocating P-type ATPase n=1 Tax=Methanomassiliicoccales archaeon TaxID=1906667 RepID=A0A843K4Z2_9ARCH)

HSP 1 Score: 188 bits (478), Expect = 1.300e-51
Identity = 102/201 (50.75%), Postives = 141/201 (70.15%), Query Frame = 1
Query:   94 LSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAF 696
            L+G+G+  TV G EV VG+   IE+ +G PL +  + V S LE  G T V+  I+G     +G+ D L+P + +  +EL+RMG+EV M+TGDNRR AQ +A+++G+  D+V AEVLPGDKA +V  LQ +G+ VAM+GDGINDAPALA ADVG+A+G GTDVAVE+ D+VL+     D + ++ LSR  + +IR N FWAF
Sbjct:  575 LAGKGVKATVKGREVVVGNRGLIEE-MGVPLGNREKEVVS-LEERGMTAVLIIIDGKLCGAVGIADVLKPTSAEAVAELRRMGIEVVMITGDNRRTAQAIAKKLGI--DKVLAEVLPGDKAKEVSRLQSEGRKVAMVGDGINDAPALAQADVGMAIGSGTDVAVEAGDIVLIKDDPRDAVAAIQLSRQTMRKIRQNLFWAF 771          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIV3_ECTSI8.350e-9676.06HMA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JA85_9PHAE3.230e-8264.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7J4IHP5_9EURY8.780e-5746.85HAD-IC family P-type ATPase n=1 Tax=Methanoregulac... [more]
A0A2W4KLY3_9FIRM2.600e-5547.52Copper-exporting P-type ATPase n=2 Tax=Firmicutes ... [more]
A0A7S3F6U4_9EUKA8.790e-5346.93Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A4P7GVE6_9FIRM9.270e-5347.60Copper-exporting P-type ATPase n=1 Tax=Thermaeroba... [more]
T0PRH4_SAPDV1.120e-5247.69Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
UPI001FA709C41.380e-5247.74heavy metal translocating P-type ATPase n=1 Tax=De... [more]
E6SGV6_THEM71.820e-5248.03Copper-exporting P-type ATPase n=2 Tax=Thermaeroba... [more]
A0A843K4Z2_9ARCH1.300e-5150.75Copper-translocating P-type ATPase n=1 Tax=Methano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18236contigH-elongata_contig18236:2666..6538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score311.6
Seed ortholog evalue3.1e-82
Seed eggNOG ortholog2880.D8LIV3
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
EggNOG free text desc.cation-transporting ATPase activity
EggNOG OGsCOG2217@1,KOG0207@2759
EC3.6.3.54
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-20_001690.1
Exons7
Model size702
Cds size702
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.3391628-CDS-H-elongata_contig18236:2665..28001622930049.3391628-CDS-H-elongata_contig18236:2665..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 2666..2800 +
1691679261.1442702-CDS-H-elongata_contig18236:2665..28001691679261.1442702-CDS-H-elongata_contig18236:2665..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 2666..2800 +
1622930049.3543434-CDS-H-elongata_contig18236:3317..34041622930049.3543434-CDS-H-elongata_contig18236:3317..3404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 3318..3404 +
1691679261.1565428-CDS-H-elongata_contig18236:3317..34041691679261.1565428-CDS-H-elongata_contig18236:3317..3404Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 3318..3404 +
1622930049.3660626-CDS-H-elongata_contig18236:3888..40141622930049.3660626-CDS-H-elongata_contig18236:3888..4014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 3889..4014 +
1691679261.1669703-CDS-H-elongata_contig18236:3888..40141691679261.1669703-CDS-H-elongata_contig18236:3888..4014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 3889..4014 +
1622930049.378484-CDS-H-elongata_contig18236:4666..47081622930049.378484-CDS-H-elongata_contig18236:4666..4708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 4667..4708 +
1691679261.1819766-CDS-H-elongata_contig18236:4666..47081691679261.1819766-CDS-H-elongata_contig18236:4666..4708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 4667..4708 +
1622930049.392899-CDS-H-elongata_contig18236:4912..49991622930049.392899-CDS-H-elongata_contig18236:4912..4999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 4913..4999 +
1691679261.1968832-CDS-H-elongata_contig18236:4912..49991691679261.1968832-CDS-H-elongata_contig18236:4912..4999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 4913..4999 +
1622930049.4060628-CDS-H-elongata_contig18236:5569..56921622930049.4060628-CDS-H-elongata_contig18236:5569..5692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 5570..5692 +
1691679261.2135777-CDS-H-elongata_contig18236:5569..56921691679261.2135777-CDS-H-elongata_contig18236:5569..5692Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 5570..5692 +
1622930049.420547-CDS-H-elongata_contig18236:6436..65381622930049.420547-CDS-H-elongata_contig18236:6436..6538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 6437..6538 +
1691679261.2209456-CDS-H-elongata_contig18236:6436..65381691679261.2209456-CDS-H-elongata_contig18236:6436..6538Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18236 6437..6538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18236.4890.1prot_H-elongata_contig18236.4890.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18236 2666..6538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18236.4890.1

>prot_H-elongata_contig18236.4890.1 ID=prot_H-elongata_contig18236.4890.1|Name=mRNA_H-elongata_contig18236.4890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp
EKSRRDAGLDASADANSLQELEMPLEGSIVALSGRGLSCTVAGLEVRVGS
PSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLR
PGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGD
KASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADV
VLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL*
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mRNA from alignment at H-elongata_contig18236:2666..6538+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18236.4890.1 ID=mRNA_H-elongata_contig18236.4890.1|Name=mRNA_H-elongata_contig18236.4890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3873bp|location=Sequence derived from alignment at H-elongata_contig18236:2666..6538+ (Himanthalia elongata Himel1 dioecious)
GAAAAATCTCGGCGGGATGCCGGACTCGACGCCAGTGCTGATGCCAATTC TCTGCAGGAGCTCGAGATGCCGTTGGAGGGAAGCATCGTGGCATTGTCTG GGAGGGGCCTGTCGTGCACCGTTGCGGGCTTAGAGGTGAATGTTAAGGCC CAACCAATTACGTTCTGTAGTGATCAAATGAACAATTACGATGACAGCGA TTCATTCCCTATCGTGTCCAAATAGCGTATTTCAAGTAGTTTCCGATCGC GGGATGTGCTGACCGCACTTTTAGCATTTCTGCTTAGCTACTCTGTATGT GGTATTTTGCAAGGATATCTTGTCTCAACGGGCTCTGTGCCGTATGTTTT GCTCGAAACCATGCAGTGCCCGTGAACATTTCACGCAGTCCCTTCATACA CAGTTAGAGCGATGTTGGTGTATGATATGATGATGATAAGGCGGTCAATG TCTGTTATATTCCAGACGAACTACCAGGTAAAGCTACAAGAGGGTTCTGG TAGCTGCTGGTAGGGGACGTGAGGAGTAGAAACTTTGGAGTCGACGAAGT CCTCGGAAGCGGTAACGTTGGCAACATATTATACGCGTTTTCCATTTTTA TAGTTTCGCCATAGCCCCCTCCCCCGCCCCCCTATCTCACCCATGTCGGC AGGTGCGCGTGGGCAGCCCAAGCTACATCGAGAAGGCCCTTGGGAAACCG CTCGCGTCCCTCCCAGAGCTTGTCGCAAGCTGCTTGGAGGTATTATACGT TGCGTGCGCACTATAGCCATAGCGAAGTAAGACGAATAAACGTGAAAGGG ATGCCTCAAGGACAGGATGCAAACCCATTTCGCAAAATGTGCGGATGGAA TAATTATTAATATTTATATATTCGCAGCAGAAGGGTAAGCAAGTGATCGT GAGCTCAGACGGCGTGCTTGGGGCGGGGGCTAAATGCTAAGCGATCTGCG GAGGCTAAGACGGTTTATGCTTTGTTTGTACGCCAACCGTGATCTTTTGG CTGCCCTCTTTGCTTTTTTTTCTCTTTCGACTCACTGCCTCTCACCCGTC GAGAGATTTACGGCACGACTATCGCTGAGAATTGACCAACAGTTGTTTTA ATAAGTAAAGCCGCCGTTGCCGCTCTAGTTCATAGTCAGCCTCACGACTA AAATATTTGGACTTTGAAATTGTTCCGTGTCTTTCATGTTTGATCCGTCA CTTCCTTCCGCCGATCTTACCAGAGCTCCGGTCGCACGGTGGTGGTTGCA TCTATTGAAGGATACCCCGCCGCGCTACTTGGTCTCGTTGACACACTGAG GCCGGGGGCTAGGCAGGTAGCCTCTGAGCTCCAACGTATGGGGCTAGAGG TAGGAAATATTTTACTGCCGGTTGCACCACTCACCACCTCAGTGAGCGCT GTATATTGTTTATGAAGGTCGTGGGTAGTAGTATGAATGGACCCCTGGAC GTAGATAGAAACCCTCGGTCCATTTTCTCGGCGGCACAGGCAGTACCAAA TTTCTTCCTCTAAGATATTTTCAATCCCCGAGAGGTTCCTCTAGCTAACT CAATTCTTGTCGATAAGATCGAGCTGGAACAGTCTTCAACCGTCGCCGAG GGGGGAGCGTTATAGCTGTACATTGTCGCCTATAGTGTTATTTTATGCCC CAGCTTTTACGTTGGAAGGTAACATAGGGGCAAAAGATATTTGCGTTCCA TCTTGCGCACTCCCACTCGCGCTGACGTAGCGCGAGCGCCTGAGGGCAAG GGCTCCGCTTTTGTATCTCGGCTACCCATTTATTTGTACCTCCTGCCGTT GTTGGGGGGTGCGCTGTACGTATCTCGCGTACCTCTGATCAAGGTTCAAA TATAATGTTTCCACTATTCGAGGAGAACCTGCGCTCATTGGCGGTTTTTG CTACAACATGTACCTTGTACAATGGTAAGAAAATTCCGTATATTCGTACG AAATCTTCCTCACAACACAACACCATCTCGCGACCGCCGGCGCTGGAACA GGTGTGGATGCTGACGGGGGACAATCGGCGGGCAGCTCAAGAGGTGATAG TCCCGAGGCAATCGGCACTTTGGAGTGATTTTTGTCTATCGCCATTGGTG TATGTATGTTTGTCTATCTATATGTATGTATGTATATATGTATCTCTACC TTGTATATCTGCTTGTCTGTTTGTCTGAATAGTTATATGCATGTCTGTCC AGTGCACAACTTATAAGGTGCGATCTTGCTTCCCTCGATTTTGACAGGTG GCTCGTAGAGTGGGCTTGCCCGCCGATCGTGTGTGCGCCGAGGTCCTTCC CGGCGACAAGGCTTCCAAGGTGGAGGAGCTCCAGGTGAGACCTCCGGAAA ATTCAGCACGTAGTTGTTTCAGAAAACAGATGGTTTGGTTTCCTCTGCCT ACTGCCACGGTCGGAACATTTTATGCTAGAAGCAGGCCGTAATTACCTGG TAGGGAACGATTTGCCTGCTCAGCGAGAGGACCCCACTTGAGTGAGTCGG TGGTTGTCAATTGGCGACGTATAAGTAGCCTGGTGGTGTGGAGGGTACTG GTTGGGTGGATCCTTCGAATGTCCTCCATTATCCGCAGGCTACTTCAGGT TCAACTACCGGCTTGTTAAAAGTTATCTCAACTGGGCCACATGGGGCTGT ACCACGCCCTGACTGGTTGTCCTAAAAGATGCACAGTTGCTTTATTTAGA AACCCGAGAAAAGCTGTAAAATGCAATTGATATAGGGTGTGCAGAAAACT CGCTTCATTTTCTTGCTTCTCACGAGGACCAAAGAAGAGGTGGATTTGCC ACTCAACTCCGCGGCCAATAGCCAGAGTATTCAAACCTCTCCCGCCTAGA GCTATATAACGAAATTCTCGCACTGCTGTTTATGCATGCTGCTGTGGTTT GCAGAAAGATGGAAAGGCCGTGGCTATGATTGGGGATGGCATCAACGACG CACCGGCCCTGGCCACCGCGGACGTCGGGATCGCTGTTGGGGGCGGGACT GACGTGGCTGTCGAATCTGCCGATGTGGTAAACAAGAAAAGTCTTCTGTT GTTCACCGTCCTTGAGGGCGAGATATGATACCAAAAAATGTTCTGATTCA GGCGCTTGCACCGCGCATAGCAGCAGGCATGTGTGTTCATATAGGCTTGG ATTGTATGCATGGGAGATGCCTTGCCTTTTCTGACTGCATGCCGCGGTGA TGACGTGCATACTGATTTGTGGGATTACAAGCTCGTCGGCACATTTGCGG CTTCAGTTTCGAGAAAGTGTCGTTCGGTGTCATGTACTTGCTTGACGTCA CTATTCTTGAAACGTTAGGGGTTATATGAAGAACATACGAGAGAAAACTC GAAGCACAATGCAAAGATCTACCCTGTACACCCCCCGAACGGGCCGGGTA TACACATAACGAAGAATAACTTGAGTACACGTTTCGCTGAGATCTCTCGA TATCGCAAAATAAAACTAGCTGCGATGGAAAAAGTCAAGTGCGGTACTTC ACTCAGCAAAACTGGGTTGGTGACTGCTCGCCGTGTATCGCTCTAATGTA CTTTATTTTCATCTCAATCCACCCTCGAGATCTCTTTTCCGGCATTCCAT GCCACAATAAGGCTATCCTCGTACTTCTTCCAACTTATTTGGAGGAGTCG AGATACGCCAATTGAACAGAAACCCGAGTCGAGCACCCCGTCCCGTTTGT GTAATCATTTATCAATCCACCAATCGATACATGGATTGATCCACCGTTTA TGTATCCCCGACTTCGCAAAGGTGCTAATGGGTTCGAGCCTGTGGGACGT GCTGGTTTCCCTGGACCTGAGCCGGGTGATCGTCAATCGCATTCGCGCAA ACTATTTCTGGGCCTTCCTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig18236:2666..6538+

>mRNA_H-elongata_contig18236.4890.1 ID=mRNA_H-elongata_contig18236.4890.1|Name=mRNA_H-elongata_contig18236.4890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig18236:2666..6538+ (Himanthalia elongata Himel1 dioecious)
GAAAAATCTCGGCGGGATGCCGGACTCGACGCCAGTGCTGATGCCAATTC
TCTGCAGGAGCTCGAGATGCCGTTGGAGGGAAGCATCGTGGCATTGTCTG
GGAGGGGCCTGTCGTGCACCGTTGCGGGCTTAGAGGAAAAATCTCGGCGG
GATGCCGGACTCGACGCCAGTGCTGATGCCAATTCTCTGCAGGAGCTCGA
GATGCCGTTGGAGGGAAGCATCGTGGCATTGTCTGGGAGGGGCCTGTCGT
GCACCGTTGCGGGCTTAGAGGTGCGCGTGGGCAGCCCAAGCTACATCGAG
AAGGCCCTTGGGAAACCGCTCGCGTCCCTCCCAGAGCTTGTCGCAAGCTG
CTTGGAGGTGCGCGTGGGCAGCCCAAGCTACATCGAGAAGGCCCTTGGGA
AACCGCTCGCGTCCCTCCCAGAGCTTGTCGCAAGCTGCTTGGAGAGCTCC
GGTCGCACGGTGGTGGTTGCATCTATTGAAGGATACCCCGCCGCGCTACT
TGGTCTCGTTGACACACTGAGGCCGGGGGCTAGGCAGGTAGCCTCTGAGC
TCCAACGTATGGGGCTAGAGAGCTCCGGTCGCACGGTGGTGGTTGCATCT
ATTGAAGGATACCCCGCCGCGCTACTTGGTCTCGTTGACACACTGAGGCC
GGGGGCTAGGCAGGTAGCCTCTGAGCTCCAACGTATGGGGCTAGAGGTGT
GGATGCTGACGGGGGACAATCGGCGGGCAGCTCAAGAGGTGTGGATGCTG
ACGGGGGACAATCGGCGGGCAGCTCAAGAGGTGGCTCGTAGAGTGGGCTT
GCCCGCCGATCGTGTGTGCGCCGAGGTCCTTCCCGGCGACAAGGCTTCCA
AGGTGGAGGAGCTCCAGGTGGCTCGTAGAGTGGGCTTGCCCGCCGATCGT
GTGTGCGCCGAGGTCCTTCCCGGCGACAAGGCTTCCAAGGTGGAGGAGCT
CCAGAAAGATGGAAAGGCCGTGGCTATGATTGGGGATGGCATCAACGACG
CACCGGCCCTGGCCACCGCGGACGTCGGGATCGCTGTTGGGGGCGGGACT
GACGTGGCTGTCGAATCTGCCGATGTGAAAGATGGAAAGGCCGTGGCTAT
GATTGGGGATGGCATCAACGACGCACCGGCCCTGGCCACCGCGGACGTCG
GGATCGCTGTTGGGGGCGGGACTGACGTGGCTGTCGAATCTGCCGATGTG
GTGCTAATGGGTTCGAGCCTGTGGGACGTGCTGGTTTCCCTGGACCTGAG
CCGGGTGATCGTCAATCGCATTCGCGCAAACTATTTCTGGGCCTTCCTGT
GAGTGCTAATGGGTTCGAGCCTGTGGGACGTGCTGGTTTCCCTGGACCTG
AGCCGGGTGATCGTCAATCGCATTCGCGCAAACTATTTCTGGGCCTTCCT
GTGA
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