mRNA_H-elongata_contig18236.4890.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: D8LIV3_ECTSI (HMA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV3_ECTSI) HSP 1 Score: 311 bits (796), Expect = 8.350e-96 Identity = 162/213 (76.06%), Postives = 179/213 (84.04%), Query Frame = 1
Query: 61 LEMPLEGSIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
LEMP +GS A+SG+GLSCTV GL+V VGSP YIE+ +G P L ELV L+SSGRTVV+A+IE + A + GLVDTLRP A+ V SEL MGLEVWMLTGDNRRAA EVARR GLP DRVCAEVLPGDKASK+EELQ+DGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSS+WDV SLDL R I+ R+R NYFWA L
Sbjct: 636 LEMPEDGSTTAVSGKGLSCTVRGLKVCVGSPGYIEREIGSPAGPLLELVVRELQSSGRTVVIAAIERHVAGVFGLVDTLRPEAKGVVSELTGMGLEVWMLTGDNRRAAHEVARRAGLPPDRVCAEVLPGDKASKIEELQEDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSIWDVFTSLDLCRTILARVRYNYFWALL 848
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A6H5JA85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA85_9PHAE) HSP 1 Score: 270 bits (690), Expect = 3.230e-82 Identity = 152/234 (64.96%), Postives = 174/234 (74.36%), Query Frame = 1
Query: 61 LEMPLEGSIVALSGRGLSCTVAGLEVR---------------VGSPSYI--EKALGKPLASLPEL----VASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
LEMP +GS A+SG+GLSCTV GL+ R + SPS K+ P+ +L L ++ +SSGRTVV+ +IE + A + GLVDTLRP A+ V SEL MGLEVWMLTGDNRRAA EVARR G+P RVCAEVLPGDKASK+EELQ+DGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSS+WDV SLDL R I+ R+R NYFWA L
Sbjct: 556 LEMPEDGSTAAVSGKGLSCTVRGLKARRERQNPLRPYLPVHLLLSPSKSPPSKSAEHPVPTLLVLFVWVLSGLFKSSGRTVVITAIERHVAGVFGLVDTLRPEAKGVVSELTGMGLEVWMLTGDNRRAAHEVARRAGIPPHRVCAEVLPGDKASKIEELQEDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSIWDVFTSLDLCRTILARVRYNYFWALL 789
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A7J4IHP5_9EURY (HAD-IC family P-type ATPase n=1 Tax=Methanoregulaceae archaeon TaxID=2485498 RepID=A0A7J4IHP5_9EURY) HSP 1 Score: 191 bits (485), Expect = 8.780e-57 Identity = 104/222 (46.85%), Postives = 145/222 (65.32%), Query Frame = 1
Query: 31 ASADANSLQELEMPLEGSIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAF 696
A DA ++ + +P + +++GRG++ TV G EV VGS + +E+ G L E LE +GRT V+ + G +L + D ++P + L+ MGL V M+TGDNRR A +AR VG+ DRV AEVLPG+KA ++ LQ+ G+ VA +GDGINDAPALATAD+GIA+G GTDVA+ES DVVL+ S L D + +++L R ++ RIR N FWAF
Sbjct: 11 AIVDAAGMEGVAVPAATAFASVTGRGVAATVDGREVLVGSRALLEER-GVALPDGAEATLRALEEAGRTAVLVAAGGEATGILAVADPVKPTTARAVEALKTMGLGVAMVTGDNRRTADAIARSVGI--DRVLAEVLPGEKADEIRRLQEGGERVAYVGDGINDAPALATADLGIAIGSGTDVAIESGDVVLVRSDLLDAVAAIELGRAVMRRIRQNIFWAF 229
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A2W4KLY3_9FIRM (Copper-exporting P-type ATPase n=2 Tax=Firmicutes TaxID=1239 RepID=A0A2W4KLY3_9FIRM) HSP 1 Score: 198 bits (504), Expect = 2.600e-55 Identity = 115/242 (47.52%), Postives = 157/242 (64.88%), Query Frame = 1
Query: 25 LDASADANSLQELEMPLEGSIV-----------------ALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
L ASA+ NS E PL +IV A+ G G+ TV G E+ VG+ +E+ G LA + + + LE G+TV++A+++G A L+ + DT++ A + +ELQRMGLEVWM+TGDN R A+ +AR+ G+P +RV AEVLP +KA KV ELQ G VAM+GDGINDAPALATADVGIA+G GTDVA+E+A+V LM L ++ ++DLSR + +IR N FWA +
Sbjct: 509 LVASAEKNS----EHPLASAIVERARQEGLQLEEPSDFEAIPGHGVRATVGGRELYVGNRRLMERQ-GIDLAGIRDRL-EALEDQGKTVMMATVDGRLAGLIAVADTIKENAPEAIAELQRMGLEVWMITGDNARTARAIARQAGIPPERVLAEVLPAEKAGKVRELQARGLKVAMVGDGINDAPALATADVGIAIGTGTDVAIEAANVTLMRGDLRGLVAAIDLSRATLAKIRQNMFWALI 744
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A7S3F6U4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F6U4_9EUKA) HSP 1 Score: 181 bits (460), Expect = 8.790e-53 Identity = 107/228 (46.93%), Postives = 143/228 (62.72%), Query Frame = 1
Query: 25 LDASADANSLQELEMPLEGSIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIE----GYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAF 696
++A AD+ + +E P E A +G G+ C V G+ V +G+ + + KA G L S + A+ LE GRT+V+ + + P L L DTLRP + V +L G++VWM++GDN RAA A G+P DRV A VLP KA V LQ+ V +GDG+NDAPALA ADVGIAVG GTDVA+E+ADVVLM L DV V++DL+RV++ RIR N+ WAF
Sbjct: 8 INAHADSAGIATVE-PTE--CTASAGLGMRCQVEGVRVVLGNRAMMAKA-GLELTSAQKAAATALEHQGRTLVLLAADLGAFAAPLGCLALSDTLRPESPHVVQKLHDFGIQVWMVSGDNERAAHSFAAAAGIPRDRVVAGVLPAGKAEVVRGLQEANMTVGFVGDGVNDAPALAQADVGIAVGSGTDVAIETADVVLMRDDLADVPVAIDLARVVMARIRLNFCWAF 231
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A4P7GVE6_9FIRM (Copper-exporting P-type ATPase n=1 Tax=Thermaerobacter sp. FW80 TaxID=2546351 RepID=A0A4P7GVE6_9FIRM) HSP 1 Score: 192 bits (487), Expect = 9.270e-53 Identity = 109/229 (47.60%), Postives = 150/229 (65.50%), Query Frame = 1
Query: 13 RDAGLDASADANSLQELEMPLEGSIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
R+AGLD A + A+ G G++ VAG +V VG+ +E A G + + + +A+ LE G+TV++ +++G A L+ + DTL+ A + + L MGLEVWM+TGDN R A+ VAR+ G+P +RV AEVLP DKA+KV ELQ+ G VAM+GDGINDAPALA ADVGIA+G GTDVA+E+ADV LM L + ++DLSR + +IR N FWA +
Sbjct: 598 REAGLDLDEPA------------AFEAVPGHGVTAQVAGRQVAVGNRRLME-ARGVAVDAAADRLAA-LEEQGKTVMLVAVDGRLAGLIAVADTLKETAPEAVAALHEMGLEVWMITGDNARTARAVARQAGIPEERVLAEVLPADKAAKVRELQERGLKVAMVGDGINDAPALAAADVGIAIGTGTDVAIEAADVTLMRGDLRTLAAAIDLSRATLAKIRQNLFWALI 812
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: T0PRH4_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PRH4_SAPDV) HSP 1 Score: 183 bits (464), Expect = 1.120e-52 Identity = 103/216 (47.69%), Postives = 145/216 (67.13%), Query Frame = 1
Query: 61 LEMPLEG--SIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASC---LESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWA 693
L PLE + A+SG+G+S ++ V +G+ Y+E ++P VA+ LE +G+TV+ I AL+G+ D RP A+Q + L +GL+V+M+TGDNRR A VA ++GLP+ V AEVLP +K +KV+ELQ G+ VAM+GDGINDAPALA AD+G+A+G GTD+A+E+A +VLM S L DV+ +LDLSR I RI+ N+ WA
Sbjct: 85 LAKPLEQPEAFTAVSGKGISVELSKAVVHLGNLDYMEDCG----MAVPAAVANHRLRLEEAGKTVIYMGICDSVVALIGISDAPRPEAKQTIAHLHALGLDVYMVTGDNRRTAHWVAAQIGLPSHHVMAEVLPANKTAKVQELQAQGRIVAMVGDGINDAPALAQADLGVAIGAGTDIAIETAQMVLMKSKLQDVVTALDLSRTIYRRIQLNFVWA 296
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: UPI001FA709C4 (heavy metal translocating P-type ATPase n=1 Tax=Desulfurispora thermophila TaxID=265470 RepID=UPI001FA709C4) HSP 1 Score: 191 bits (484), Expect = 1.380e-52 Identity = 116/243 (47.74%), Postives = 150/243 (61.73%), Query Frame = 1
Query: 22 GLDASADANSLQELEMPLEGSIV-----------------ALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
GL ASA++ S E PL ++V AL G GL V GLEV VG P +I + G +A VA+ LE +G+T V +EG A LL L DTL+P A V +EL R+G+EVWM+TGDN+R AQ VAR+ G+ V A VLPG+KA KV L++ G V M+GDGINDAPALA ADVG A+G GTD+A+E+A V L+G SL V+ ++ LSR + I+ N FWAF+
Sbjct: 512 GLAASAESTS----EHPLAAAVVEYARQQGSQIVAPEEFQALPGFGLQARVQGLEVLVGKPDFIVER-GYAVAQWEAQVAT-LEQAGKTAVFVVVEGQVAGLLALADTLKPEAASVVAELHRLGMEVWMITGDNQRTAQAVARQAGI--QNVLAGVLPGEKADKVASLKERGLVVGMVGDGINDAPALAVADVGFALGSGTDIAIETAPVTLLGGSLQGVVNAIKLSRATLRNIKQNLFWAFI 746
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: E6SGV6_THEM7 (Copper-exporting P-type ATPase n=2 Tax=Thermaerobacter TaxID=73918 RepID=E6SGV6_THEM7) HSP 1 Score: 191 bits (486), Expect = 1.820e-52 Identity = 110/229 (48.03%), Postives = 152/229 (66.38%), Query Frame = 1
Query: 13 RDAGLDASADANSLQELEMPLEGSIVALSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAFL 699
R+AGLD L E E S A+ G G+ +AG +V VG+ +E A G + + +A+ LE G+TV++ +++G A L+ + DTL+ A + + L MGLEVWM+TGDN R A+ VAR+ G+PA+RV AEVLP DKA+KV ELQ G+ VAM+GDGINDAPALA ADVGIA+G GTDVA+E++DV LM L ++ +++LSR + +IR N FWA +
Sbjct: 672 REAGLD-------LDEPE-----SFEAIPGHGVQARLAGRDVVVGNRRLME-ARGVAVDAAANRLAA-LEEQGKTVMLVAVDGRLAGLIAVADTLKETAPEAVAALHEMGLEVWMITGDNARTARAVARQAGIPAERVLAEVLPADKAAKVRELQARGRKVAMVGDGINDAPALAAADVGIAIGTGTDVAIETSDVTLMRGDLRGLVAAIELSRATLGKIRQNLFWALI 886
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Match: A0A843K4Z2_9ARCH (Copper-translocating P-type ATPase n=1 Tax=Methanomassiliicoccales archaeon TaxID=1906667 RepID=A0A843K4Z2_9ARCH) HSP 1 Score: 188 bits (478), Expect = 1.300e-51 Identity = 102/201 (50.75%), Postives = 141/201 (70.15%), Query Frame = 1
Query: 94 LSGRGLSCTVAGLEVRVGSPSYIEKALGKPLASLPELVASCLESSGRTVVVASIEGYPAALLGLVDTLRPGARQVASELQRMGLEVWMLTGDNRRAAQEVARRVGLPADRVCAEVLPGDKASKVEELQKDGKAVAMIGDGINDAPALATADVGIAVGGGTDVAVESADVVLMGSSLWDVLVSLDLSRVIVNRIRANYFWAF 696
L+G+G+ TV G EV VG+ IE+ +G PL + + V S LE G T V+ I+G +G+ D L+P + + +EL+RMG+EV M+TGDNRR AQ +A+++G+ D+V AEVLPGDKA +V LQ +G+ VAM+GDGINDAPALA ADVG+A+G GTDVAVE+ D+VL+ D + ++ LSR + +IR N FWAF
Sbjct: 575 LAGKGVKATVKGREVVVGNRGLIEE-MGVPLGNREKEVVS-LEERGMTAVLIIIDGKLCGAVGIADVLKPTSAEAVAELRRMGIEVVMITGDNRRTAQAIAKKLGI--DKVLAEVLPGDKAKEVSRLQSEGRKVAMVGDGINDAPALAQADVGMAIGSGTDVAVEAGDIVLIKDDPRDAVAAIQLSRQTMRKIRQNLFWAF 771 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18236.4890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18236.4890.1 >prot_H-elongata_contig18236.4890.1 ID=prot_H-elongata_contig18236.4890.1|Name=mRNA_H-elongata_contig18236.4890.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=234bp EKSRRDAGLDASADANSLQELEMPLEGSIVALSGRGLSCTVAGLEVRVGSback to top mRNA from alignment at H-elongata_contig18236:2666..6538+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18236.4890.1 ID=mRNA_H-elongata_contig18236.4890.1|Name=mRNA_H-elongata_contig18236.4890.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3873bp|location=Sequence derived from alignment at H-elongata_contig18236:2666..6538+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18236:2666..6538+ >mRNA_H-elongata_contig18236.4890.1 ID=mRNA_H-elongata_contig18236.4890.1|Name=mRNA_H-elongata_contig18236.4890.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1404bp|location=Sequence derived from alignment at H-elongata_contig18236:2666..6538+ (Himanthalia elongata Himel1 dioecious)back to top |