mRNA_H-elongata_contig182357.4889.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182357.4889.1
Unique NamemRNA_H-elongata_contig182357.4889.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig182357.4889.1 vs. uniprot
Match: D7G3K9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K9_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 4.100e-67
Identity = 104/126 (82.54%), Postives = 110/126 (87.30%), Query Frame = 1
Query:   28 LLYPIEQGGGVLESDECAMYFVNFSLDIAIGTFVIWCFVRVQELAARRFGISSLKVTGDYGTPPLFSVYRTQLLAYMLILVICKAVTTAIVITMDEVLSSLANALFRPVRNYPELELTIVMIFCPW 405
            +L  I +GGG+  SDECAMYFVNFSLDIAIGTF+IWCFVRVQEL A R GI SLKVTGDYGTPPLFSVYRTQLLAY +ILVICKAVTTAIVI MDEVLSSLA ALF PV  YPELELT+VMI CPW
Sbjct:   77 ILLSIHEGGGIPGSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPW 202          
BLAST of mRNA_H-elongata_contig182357.4889.1 vs. uniprot
Match: A0A836CKC4_9STRA (Vacuolar membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC4_9STRA)

HSP 1 Score: 127 bits (319), Expect = 5.090e-34
Identity = 62/121 (51.24%), Postives = 81/121 (66.94%), Query Frame = 1
Query:   43 EQGGGVLESDECAMYFVNFSLDIAIGTFVIWCFVRVQELAARRFGISSLKVTGDYGTPPLFSVYRTQLLAYMLILVICKAVTTAIVITMDEVLSSLANALFRPVRNYPELELTIVMIFCPW 405
            +QG     SDECA+YFVN+++DI +GT +IW  V+ Q   A+R G+ SL+ TG YG PP  SVY  QLLA+M ILVI K     +VI +D  +  +A  LF P++ YP+LEL IVMI CPW
Sbjct:   81 DQGDDA--SDECALYFVNYAVDILLGTGLIWGLVQAQVTMAKRLGVGSLRHTGFYGDPPRLSVYLAQLLAFMFILVIQKTALAFLVIALDGQIEVMAEFLFLPLQGYPDLELLIVMILCPW 199          
BLAST of mRNA_H-elongata_contig182357.4889.1 vs. uniprot
Match: A0A836CED2_9STRA (Vacuolar membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED2_9STRA)

HSP 1 Score: 126 bits (317), Expect = 6.520e-34
Identity = 58/118 (49.15%), Postives = 76/118 (64.41%), Query Frame = 1
Query:   52 GGVLESDECAMYFVNFSLDIAIGTFVIWCFVRVQELAARRFGISSLKVTGDYGTPPLFSVYRTQLLAYMLILVICKAVTTAIVITMDEVLSSLANALFRPVRNYPELELTIVMIFCPW 405
            G     DECA+YFV F+LD+ +G  ++W  +R QE  ARR+   SL ++GDYG PP F  +  Q+  YML +V  K V T +V+  D VLS ++  LF PVR +PE ELTIVMI CPW
Sbjct:   83 GVAAPRDECALYFVQFALDVLLGVALVWVLIRTQERLARRYNWPSLAISGDYGNPPRFQWFVAQMGVYMLSVVAVKTVITLVVLAGDAVLSDVSAVLFAPVREFPEAELTIVMIICPW 200          
BLAST of mRNA_H-elongata_contig182357.4889.1 vs. uniprot
Match: A0A835YS54_9STRA (Vacuolar membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS54_9STRA)

HSP 1 Score: 120 bits (302), Expect = 9.980e-31
Identity = 56/121 (46.28%), Postives = 75/121 (61.98%), Query Frame = 1
Query:   43 EQGGGVLESDECAMYFVNFSLDIAIGTFVIWCFVRVQELAARRFGISSLKVTGDYGTPPLFSVYRTQLLAYMLILVICKAVTTAIVITMDEVLSSLANALFRPVRNYPELELTIVMIFCPW 405
                  +E D CA+YFV F LD+ +G  +IW  VR QE  A R  + SL V+GDYG PP    +  QL AYM+ L+I K + + +V+  D +LS L+  LF PV  +P++ELTIVMI CPW
Sbjct:   66 RANADAVERDACALYFVQFVLDMMLGMVMIWAMVRTQEWLAERCNVPSLAVSGDYGNPPKVQWFWHQLGAYMMSLLIIKTIISTVVVAEDRILSRLSTWLFSPVAKHPDVELTIVMIVCPW 186          
BLAST of mRNA_H-elongata_contig182357.4889.1 vs. uniprot
Match: A0A0P1ATD2_PLAHL (Phosphatidylinositol-3,5-bisphosphate 3-phosphatase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATD2_PLAHL)

HSP 1 Score: 110 bits (276), Expect = 1.310e-25
Identity = 55/132 (41.67%), Postives = 82/132 (62.12%), Query Frame = 1
Query:   10 VFIVIFLLYPIEQGGGVLES-DECAMYFVNFSLDIAIGTFVIWCFVRVQELAARRFGISSLKVTGDYGTPPLFSVYRTQLLAYMLILVICKAVTTAIVITMDEVLSSLANALFRPVRNYPELELTIVMIFCP 402
            +FI I L    E    V  S D+CA+YFVNF+LD   G F+ +  +    L A RF  SSLK  GDYGTPP    + TQ+++++L++ +CK +   +++   + L + A  LF+P+ +YP++ELTIVMI CP
Sbjct:  832 LFIAIVLYSYQEDMHSVGHSVDQCALYFVNFTLDTTFGIFLNYVLLSAVVLLALRFNWSSLKKPGDYGTPPRVRTWVTQVISWILVIFVCKILIAVVIVAFQKPLGAFAALLFKPLDSYPDVELTIVMIACP 963          
BLAST of mRNA_H-elongata_contig182357.4889.1 vs. uniprot
Match: A0A6G0WLM6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLM6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.670e-25
Identity = 48/113 (42.48%), Postives = 72/113 (63.72%), Query Frame = 1
Query:   64 ESDECAMYFVNFSLDIAIGTFVIWCFVRVQELAARRFGISSLKVTGDYGTPPLFSVYRTQLLAYMLILVICKAVTTAIVITMDEVLSSLANALFRPVRNYPELELTIVMIFCP 402
             +DECAMYF+NF+LD +IG  + W F+R+  L ARRF  ++L+  GDYG P    V+  QLLA+++I+V  K V    +I     L   A+ +F+P+  +P +EL +VM+ CP
Sbjct:   84 STDECAMYFINFTLDTSIGVLLNWLFLRLLVLLARRFKWTALQTPGDYGDPVRVRVWIIQLLAWLIIIVSAKLVIGRFIILFQHSLVEFAHGMFQPLEQHPRVELVLVMVACP 196          
BLAST of mRNA_H-elongata_contig182357.4889.1 vs. uniprot
Match: D0N4K7_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N4K7_PHYIT)

HSP 1 Score: 105 bits (261), Expect = 7.990e-25
Identity = 52/132 (39.39%), Postives = 79/132 (59.85%), Query Frame = 1
Query:   10 VFIVIFLL-YPIEQGGGVLESDECAMYFVNFSLDIAIGTFVIWCFVRVQELAARRFGISSLKVTGDYGTPPLFSVYRTQLLAYMLILVICKAVTTAIVITMDEVLSSLANALFRPVRNYPELELTIVMIFCP 402
            +FI I L  Y  E   G    D+CA+YFVNF+LD  +G F+ +  +    L A RF  SSLK  GDYGTP     +  Q+L+++L++  CK +   +++   + L + A  LF+P+ ++P++EL IVMI CP
Sbjct:   70 LFIAIVLFNYQKEMESGEESVDQCALYFVNFTLDTTLGVFLNYVLLSAVVLLALRFSWSSLKTPGDYGTPVRVRTWILQVLSWILVIFTCKFLIALLIVAFQKPLGAFAVLLFKPLADHPDVELAIVMIACP 201          
BLAST of mRNA_H-elongata_contig182357.4889.1 vs. uniprot
Match: A0A2D4BU66_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU66_PYTIN)

HSP 1 Score: 105 bits (261), Expect = 9.250e-25
Identity = 49/131 (37.40%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   16 IVIFLLYPIEQG--GGVLESDECAMYFVNFSLDIAIGTFVIWCFVRVQELAARRFGISSLKVTGDYGTPPLFSVYRTQLLAYMLILVICKAVTTAIVITMDEVLSSLANALFRPVRNYPELELTIVMIFCP 402
            ++  +LY  E G   G    D+CA YFVNF++D  +G    W F+ +    A RF  +SL   GDYG P   S++  QL++++ I+ + K V   +++ +++ L  LA  LF P++ YP +EL IVMI CP
Sbjct:   74 LIAIMLYQYEHGHGSGTTGVDQCAFYFVNFTMDTTVGVLFNWMFLEMVSSLAVRFQFTSLTTPGDYGDPIQVSIWLKQLVSWIFIIFLTKLVIALVIVALEKPLGDLAMWLFAPLQPYPNVELAIVMILCP 204          
BLAST of mRNA_H-elongata_contig182357.4889.1 vs. uniprot
Match: A0A3R7HEI9_9STRA (Myotubularin phosphatase domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7HEI9_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.140e-24
Identity = 52/131 (39.69%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   16 IVIFLLYPIE--QGGGVLESDECAMYFVNFSLDIAIGTFVIWCFVRVQELAARRFGISSLKVTGDYGTPPLFSVYRTQLLAYMLILVICKAVTTAIVITMDEVLSSLANALFRPVRNYPELELTIVMIFCP 402
            ++  +LY  E  Q     + D+CA+YFVNF+LD  IG F+ +  +    L A RF  +SL+  GDYG P     +  QLL++++++   K +   +++  D+ LSSLA  LF+P++NYPE+EL +VMI CP
Sbjct:  678 LIAIMLYSYEEQQKEDDAKVDQCALYFVNFTLDTTIGVFLNYVLLSAVVLLALRFHWTSLQTPGDYGIPVRIKAWLLQLLSWIIVIFSAKFIIAMLILAFDKPLSSLAMVLFKPLKNYPEVELALVMILCP 808          
BLAST of mRNA_H-elongata_contig182357.4889.1 vs. uniprot
Match: K3WV98_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV98_GLOUD)

HSP 1 Score: 104 bits (259), Expect = 1.520e-24
Identity = 49/130 (37.69%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   16 IVIFLLYPIEQGGGVLES-DECAMYFVNFSLDIAIGTFVIWCFVRVQELAARRFGISSLKVTGDYGTPPLFSVYRTQLLAYMLILVICKAVTTAIVITMDEVLSSLANALFRPVRNYPELELTIVMIFCP 402
            ++  LLY  +    V++  D+CA YFVNF++D   G F+ W F+    + ARRF  +S+ V GDYG P    V+  QL+++++I+ + K V    ++ +++ L  LA  +F P++ YP LEL +VMI CP
Sbjct:   81 LIAILLYNHQMEAQVMKGVDQCAFYFVNFTMDTTFGVFLNWAFLEGFSMLARRFQWTSVMVPGDYGNPIRVRVWLAQLISWIVIIFLTKLVIAVFIVALEKPLGELAMWVFTPLQPYPHLELALVMIACP 210          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182357.4889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3K9_ECTSI4.100e-6782.54Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CKC4_9STRA5.090e-3451.24Vacuolar membrane protein-domain-containing protei... [more]
A0A836CED2_9STRA6.520e-3449.15Vacuolar membrane protein-domain-containing protei... [more]
A0A835YS54_9STRA9.980e-3146.28Vacuolar membrane protein-domain-containing protei... [more]
A0A0P1ATD2_PLAHL1.310e-2541.67Phosphatidylinositol-3,5-bisphosphate 3-phosphatas... [more]
A0A6G0WLM6_9STRA6.670e-2542.48Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
D0N4K7_PHYIT7.990e-2539.39Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A2D4BU66_PYTIN9.250e-2537.40Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3R7HEI9_9STRA1.140e-2439.69Myotubularin phosphatase domain-containing protein... [more]
K3WV98_GLOUD1.520e-2437.69Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182357contigH-elongata_contig182357:67..909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score211.5
Seed ortholog evalue2.5e-52
Seed eggNOG ortholog2880.D7G3K9
Preferred nameTMEM110
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005246,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005938,GO:0007154,GO:0007165,GO:0008150,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010959,GO:0012505,GO:0016020,GO:0016021,GO:0016247,GO:0019722,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0023056,GO:0031090,GO:0031224,GO:0031984,GO:0032237,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032541,GO:0032879,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035556,GO:0035584,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050848,GO:0050850,GO:0050896,GO:0051049,GO:0051050,GO:0051716,GO:0051924,GO:0051928,GO:0065007,GO:0065009,GO:0070884,GO:0070886,GO:0071782,GO:0071944,GO:0098588,GO:0098772,GO:0098805,GO:0098827,GO:0098852,GO:0099106,GO:0099568,GO:0106056,GO:0106058,GO:1901019,GO:1901021,GO:1901339,GO:1901341,GO:1902531,GO:1902533,GO:1903169,GO:1904062,GO:1904064,GO:1904427,GO:2001257,GO:2001259
EggNOG free text desc.activation of store-operated calcium channel activity
EggNOG OGs2BJXQ@1,2S1HE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.2789803-CDS-H-elongata_contig182357:66..2581622930049.2789803-CDS-H-elongata_contig182357:66..258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182357 67..258 +
1691679261.1237721-CDS-H-elongata_contig182357:66..2581691679261.1237721-CDS-H-elongata_contig182357:66..258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182357 67..258 +
1622930049.2966487-CDS-H-elongata_contig182357:693..9091622930049.2966487-CDS-H-elongata_contig182357:693..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182357 694..909 +
1691679261.1343365-CDS-H-elongata_contig182357:693..9091691679261.1343365-CDS-H-elongata_contig182357:693..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182357 694..909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182357.4889.1prot_H-elongata_contig182357.4889.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182357 67..909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182357.4889.1

>prot_H-elongata_contig182357.4889.1 ID=prot_H-elongata_contig182357.4889.1|Name=mRNA_H-elongata_contig182357.4889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
FCCVFIVIFLLYPIEQGGGVLESDECAMYFVNFSLDIAIGTFVIWCFVRV
QELAARRFGISSLKVTGDYGTPPLFSVYRTQLLAYMLILVICKAVTTAIV
ITMDEVLSSLANALFRPVRNYPELELTIVMIFCPW*
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mRNA from alignment at H-elongata_contig182357:67..909+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182357.4889.1 ID=mRNA_H-elongata_contig182357.4889.1|Name=mRNA_H-elongata_contig182357.4889.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=843bp|location=Sequence derived from alignment at H-elongata_contig182357:67..909+ (Himanthalia elongata Himel1 dioecious)
TTTTGTTGTGTTTTTATCGTTATTTTTTTGTTGTATCCAATTGAGCAGGG AGGAGGCGTGCTCGAGTCAGACGAGTGCGCCATGTACTTTGTTAATTTTT CTCTGGACATCGCGATCGGCACGTTCGTAATCTGGTGCTTCGTGAGGGTG CAGGAGCTCGCCGCGCGCCGATTCGGCATCAGCAGCCTAAAGGTAGATCT CCTCCCCGGTGCAACCCGTAAAAACATGCCTCGCTAAAATCGCGGAACAG TAGCGCAGAGCGCTGTTTTTTTGTTTTTTGCGGGGGGGGAGGGCGCGCGT GACGCCACCCATATTCCCCTGCTACCGAGAGTCCTCGCCCCCTTCCCTTC CTGCCTTCTCTAGTTTATGGTTGAAAGCTTCGCCGTCGTCGATGGCATTT AGCTATTGCGGTGCGTATCTCAGAAGAGAGAGAAAGCGAGAGAGAGTGCG CGCGCGCCTGTTTGTGCGATGGAGGAAAATCCGCGCGACGCGGATGTAAG CGTCTCGCGGAAGAAACGTATTTTTCGGTAACCTAGCCGGCCTCTCGTGG CACTATACACCATATACCACATCCGTATACGGAGCCTTCGCGTCCCCCCC CCCGTGTGGGGCCCCTCTTGCCTGCAGGTTACGGGAGACTACGGTACGCC CCCGCTGTTTTCGGTGTACCGAACCCAGCTGCTGGCGTACATGTTGATCC TGGTAATCTGCAAGGCCGTCACGACCGCCATCGTGATCACCATGGACGAA GTGCTGTCGTCCCTCGCGAACGCGTTGTTCAGGCCTGTAAGGAACTACCC CGAGCTGGAGCTTACGATCGTGATGATATTTTGCCCGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig182357:67..909+

>mRNA_H-elongata_contig182357.4889.1 ID=mRNA_H-elongata_contig182357.4889.1|Name=mRNA_H-elongata_contig182357.4889.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig182357:67..909+ (Himanthalia elongata Himel1 dioecious)
TTTTGTTGTGTTTTTATCGTTATTTTTTTGTTGTATCCAATTGAGCAGGG
AGGAGGCGTGCTCGAGTCAGACGAGTGCGCCATGTACTTTGTTAATTTTT
CTCTGGACATCGCGATCGGCACGTTCGTAATCTGGTGCTTCGTGAGGGTG
CAGGAGCTCGCCGCGCGCCGATTCGGCATCAGCAGCCTAAAGTTTTGTTG
TGTTTTTATCGTTATTTTTTTGTTGTATCCAATTGAGCAGGGAGGAGGCG
TGCTCGAGTCAGACGAGTGCGCCATGTACTTTGTTAATTTTTCTCTGGAC
ATCGCGATCGGCACGTTCGTAATCTGGTGCTTCGTGAGGGTGCAGGAGCT
CGCCGCGCGCCGATTCGGCATCAGCAGCCTAAAGGTTACGGGAGACTACG
GTACGCCCCCGCTGTTTTCGGTGTACCGAACCCAGCTGCTGGCGTACATG
TTGATCCTGGTAATCTGCAAGGCCGTCACGACCGCCATCGTGATCACCAT
GGACGAAGTGCTGTCGTCCCTCGCGAACGCGTTGTTCAGGCCTGTAAGGA
ACTACCCCGAGCTGGAGCTTACGATCGTGATGATATTTTGCCCGTGGTGA
GTTACGGGAGACTACGGTACGCCCCCGCTGTTTTCGGTGTACCGAACCCA
GCTGCTGGCGTACATGTTGATCCTGGTAATCTGCAAGGCCGTCACGACCG
CCATCGTGATCACCATGGACGAAGTGCTGTCGTCCCTCGCGAACGCGTTG
TTCAGGCCTGTAAGGAACTACCCCGAGCTGGAGCTTACGATCGTGATGAT
ATTTTGCCCGTGGTGA
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