mRNA_H-elongata_contig18228.4887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18228.4887.1
Unique NamemRNA_H-elongata_contig18228.4887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: D7FUN1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUN1_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 2.250e-100
Identity = 255/669 (38.12%), Postives = 324/669 (48.43%), Query Frame = 1
Query:    1 QIPHLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWFAPL-----ARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTG-----AITARRGEL--ITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDWGGKEDARTDGCEKGLYVPLSS----SQTLSPSGEHGEEDVGCKSNVLPRTACDHRGRLSEEIKPQAQAKNGRAHHAHHALVAAGNEASKDLTNQPTEVKTPESTISRRLEAGSMMEGELKERASVAKLAKTLADDFGRFPPAEEEWEDIRGNGGGEKKESGEVLGGGL----DTEAGRSDARVS-----DERSGVGDND--LEKCQNGTSDIFSRWEKNADAGENASLLEEPLRKAEALKAEGNDAFGKEKFEAVNRAYSDALCCLKSAGFTAPTLP-------LLKLTPGRMDGTSAAANTLRGVLHRNRAAVLLRLFDGAMASTST-------------------------------ASDEMTMTKHDVSSGNICQLPRGMVRTNQNDGGQGSFPPFADNGGEHRALTLLDQCEEDCLRAIEVDPTDKKARFRLARCREMGRQCRRRELAITD------NESNTEQERRRRDKKAALVAKILTRRANCHEINGGT 1794
            QIPHLSLLYLHH KRWDFVSAFVL+GGLH L  LFTH+NLV+RM A+   V+ITAH GF+WFAPL          S   +A LHRALL LRS+PAFI GLIANSW    +       AI A  G     TFPG CL+CLE+LAMWLSWVRALHTVD  LRLSR L +AIE+WGG+   R         +PL +     +T       GE  +      +   A      ++E+ K    A       A             D ++  T  + P   +    E  +M++ E KERA V +L+K L  DF RFPPAE+EWE +  +  GE+      LGGG      TE G+S          DE  G GD+    E  + G     S   +  +            RKA ALK EGN+AFG+ + +A   AY+ AL  L  A   A  L         +      ++ + A A  L GVLHRNRAAV LRLF+                                          +   + H   SG   ++  G  R  Q +                 +L LL++CE DCLRAIEVD  DKKAR RL +CRE+ R+C R  LA         + +++ Q+ R + +KA LVAKIL R    HEI GG+
Sbjct:  113 QIPHLSLLYLHHLKRWDFVSAFVLSGGLHALCPLFTHDNLVVRMKAITSLVSITAHPGFDWFAPLPGRIKGTANNSNAIDARLHRALLGLRSEPAFISGLIANSWSGGAAVDDTDATAIEATEGGRGGKTFPGACLMCLELLAMWLSWVRALHTVDGTLRLSRPLFRAIEEWGGRGGEREGNIAWSERLPLPTLPHAKKTCGDGKAEGEGAIVVAKGEIVDVAAVGAAAVTEKGKMTPAAALMEKDSAXXXXXXXXXXXEGDGSS--TGGRAPAGDLE--AETAAMIQAERKERAEVLELSKKLVADFARFPPAEQEWEGVEEDDRGERSGGDLPLGGGAAAPTPTEEGKSSTAAGRGCCDDEARGSGDSGGREETSEAGEETRSSLPSEATEVAPQPPPTSVSTRKALALKLEGNEAFGEGQMQAAMEAYTKALGVLNGAATEARALEGAPKKTTTVTXXTEELEASRAEATALSGVLHRNRAAVALRLFNSKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCSQRQPSTHPTPSGRRRRVSPGRERRTQEEETDDVRRSL------ELSLALLEECESDCLRAIEVDAGDKKARLRLDKCRELRRRCYRGGLASASAGGEGCSTAHSRQDERLQGRKADLVAKILARAEKSHEITGGS 771          
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A6H5KEI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI6_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 1.450e-91
Identity = 253/678 (37.32%), Postives = 314/678 (46.31%), Query Frame = 1
Query:    1 QIPHLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWFAP-----LARGGESATTEACLHRALLNLRSDPAFIPGLIANSW--GTPESTGAITAR-----RGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDWGGKEDARTDGCE-KGLYVPLSS-SQTLSPSGEHGEEDVGC----KSNVLPRTACDHRG-RLSEEIKPQAQAKNGRAHHAHHALVAAGNEASKDLTNQPTEVKTPESTISRRLEAGSMMEGELKERASVAKLAKTLADDFGRFPPAEEEWEDIRGNGGGEKKESGEVLGGGLDTEAGRSDARVSDERSGVGDNDLEKCQNGTSDIFSRWEKNADAGENASLLEEPL------------RKAEALKAEGNDAFGKEKFEAVNRAYSDALCCLKSAGFTAPTL---PLLKLTPG-----RMDGTSAAANTLRGVLHRNRAAVLLRLFDGAMASTSTASDEMTMTKHDVSSGNICQLPRGMVRTNQNDGGQGSFPPFADNGGEHR-----------------------------------ALTLLDQCEEDCLRAIEVDPTDKKARFRLARCREMGRQCRRRELAITD------NESNTEQERRRRDKKAALVAKILTRRANCHEINGGT 1794
            Q+PHLSLLYLHH KRWDFVSAFVL+GGLH L SLFTH+NLVIRM A+   V+ITAH GF+WFAP       +   S TTEA LHRALL LRS+PAFI GLIANSW  G  + T A   +     RG+  TFPG CL+CLE+LAMWLSWVRALHTVD  LRLSR L +AIE+W GK   R    E     +PL++   T  P G+   E  G        V+   A         E+I P A         A     A                  P   I    E  +M++ E KERA V +L++ L  DF RFPPAE+EWE +  +GG  ++  G++  G                                                                    RKA ALK EGN+AFG+   +A   AY+ AL  L  A      L   P  K+T        ++ + A A  L GVLHRNRAAV LRLF+   A+ + A +  T       +      PRG       DG  G                                                +L LL++CE DCLRAIEVD  DKKAR RL +CRE+ R+C R  LA         + +++ Q+   + +KA LVAKIL R    HEI GG+
Sbjct:   67 QVPHLSLLYLHHLKRWDFVSAFVLSGGLHALCSLFTHDNLVIRMKAITSLVSITAHPGFDWFAPPPGRIKGKTNNSNTTEARLHRALLGLRSEPAFISGLIANSWSGGAADDTDATAIKATDGGRGDK-TFPGACLMCLELLAMWLSWVRALHTVDGTLRLSRPLFRAIEEWAGKGGEREGNIEWSDERLPLTTLPHTKKPCGDGKAEGGGAIVVASGEVVDVVAIGGADVTKKEKITPAAVL-------AEKDSGAXXXXXXXXXXXXXXXGGAPAGDIE--AETAAMIQAERKERAEVLELSRKLVADFARFPPAEQEWEGVEEDGG--ERSGGDLPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSAFTRKALALKIEGNEAFGEGDMQAAMEAYTKALGVLNGAATETRPLEGAPKNKMTTXXXXXEELEASRAEATVLSGVLHRNRAAVALRLFNSKAAAAAVAKERATEDNQKNEA-----APRG-------DGVDGGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQEQTDDVRKSLELSLALLEECESDCLRAIEVDAGDKKARLRLDKCRELRRRCYRGGLASASAGREGCSTAHSRQDESLQGRKADLVAKILARAEKSHEITGGS 720          
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A8K1C1Z4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C1Z4_PYTOL)

HSP 1 Score: 95.1 bits (235), Expect = 9.390e-17
Identity = 61/167 (36.53%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   13 LSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWF-APLARGGESATTEACLHRALLNLRS-DPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDWGGKEDARTD 507
            L+L YL H + W     F+L  GL  L  LF HE+L +R  A++ FV +T+   F+WF AP+   G +A     LH  ++ L + +  F+  +I+N     ES     A +  +   PGG  + L+VLA +LSWVR L+T +  LRLSR+LL+ + DW  + +   D
Sbjct:  103 LALFYLKHVQNWPLTVEFILQDGLQILVDLFLHEDLQVRGQAIDCFVQVTSQSAFDWFEAPV---GYNAMV---LHAKMIALSTGESGFLRSIISNI-RLYESQ----ADKEPMTKLPGGTYVLLQVLAFYLSWVRRLYT-EGALRLSRELLELLHDWQTRTETDND 257          
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A7S0XSC3_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0XSC3_HEMAN)

HSP 1 Score: 88.6 bits (218), Expect = 1.160e-15
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 1
Query:   13 LSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAH-RGFNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDW 480
            + LLYL H +RW     F+L GGL +L +L THENL +R  AV  F  +T      +W        +       L R L  L +    +  L+ N  G+                +P G   CL +LA WLSWVRAL+  + +LRLS+++L A+++W
Sbjct:  119 VPLLYLAHSRRWALAREFILGGGLASLVTLVTHENLYLRSQAVETFSAMTDRCEDVDWL-------DVDDANEKLRRQLFGLSASCDIVKALLGNMKGS----------------YPNGGFSCLRILAFWLSWVRALYCPERKLRLSQKVLDALKEW 252          
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A7S1GZ69_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GZ69_HEMAN)

HSP 1 Score: 88.6 bits (218), Expect = 5.340e-15
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 1
Query:   13 LSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAH-RGFNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDW 480
            + LLYL H +RW     F+L GGL +L +L THENL +R  AV  F  +T      +W        +       L R L  L +    +  L+ N  G+                +P G   CL +LA WLSWVRAL+  + +LRLS+++L A+++W
Sbjct:  111 VPLLYLAHSRRWALAREFILGGGLASLVTLVTHENLYLRSQAVETFSAMTDRCEDVDWL-------DVDDANEKLRRQLFGLSASCDIVKALLGNMKGS----------------YPNGGFSCLRILAFWLSWVRALYCPERKLRLSQKVLDALKEW 244          
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A7S1DV65_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DV65_HEMAN)

HSP 1 Score: 88.6 bits (218), Expect = 5.380e-15
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 1
Query:   13 LSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAH-RGFNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDW 480
            + LLYL H +RW     F+L GGL +L +L THENL +R  AV  F  +T      +W        +       L R L  L +    +  L+ N  G+                +P G   CL +LA WLSWVRAL+  + +LRLS+++L A+++W
Sbjct:  111 VPLLYLAHSRRWALAREFILGGGLASLVTLVTHENLYLRSQAVETFSAMTDRCEDVDWL-------DVDDANEKLRRQLFGLSASCDIVKALLGNMKGS----------------YPNGGFSCLRILAFWLSWVRALYCPERKLRLSQKVLDALKEW 244          
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: K3XBE4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XBE4_GLOUD)

HSP 1 Score: 88.6 bits (218), Expect = 7.140e-15
Identity = 54/162 (33.33%), Postives = 84/162 (51.85%), Query Frame = 1
Query:   16 SLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWFAPLARGGESATTEACLHRALLNLRSDPA-FIPGLIAN-SWGTPESTGAIT----ARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCR-LRLSRQLLQAIEDW 480
            +L YL H + WD V  FV+  GL  L+ +F H++L +R  A++ FV IT++  F+WF            +  LH  ++ L +  + F+  L+ N     P+    +     A     +  PGG  + L+VLA +LSWVR  +T     LRLSR+LL  +E+W
Sbjct:  101 TLFYLKHARNWDLVVEFVMLDGLQVLADMFLHQDLQVRGQAIDSFVQITSNPRFDWF-----NDPVGYHDKVLHSKMIGLAAPSSPFMRNLMQNIQLYDPKHAKQLLELSDANSNHSVRLPGGTYVMLQVLAFFLSWVRKFYTQPRNELRLSRELLDLLENW 257          
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: T0QCX1_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QCX1_SAPDV)

HSP 1 Score: 86.3 bits (212), Expect = 4.930e-14
Identity = 51/157 (32.48%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   10 HLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDW 480
            +L+++YL H + W F S F+L  GL TL S+F HE++ +R  A++ F  +T++  F+WF        + + E  LH  +L L +  + +  L++N   TPE +                    L++LA ++SWVR L+T    LRLS  LL ++E W
Sbjct:   91 YLAMMYLCHAQEWSFASEFILHDGLVTLVSMFDHEDIHMRGQALDTFTQLTSNPAFDWFQQ-----PTTSFEKALHHKMLLLPNSASIVQQLVSNQ-ATPELS-----------------FCALQILAFYMSWVRKLYTKG-ELRLSSALLASLETW 223          
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A067D3Y0_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D3Y0_SAPPC)

HSP 1 Score: 84.7 bits (208), Expect = 1.520e-13
Identity = 55/174 (31.61%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   10 HLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNITAHRGFNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDWGGKEDARTDGCEKGLYV 531
            +L+++YL H + W F S F+L  GL TL S+F H+++ +R  A++ F  +T++  F+WF        +   E  LH  +L L +  + +  L+ N   TPE +                    L++LA ++SWVR L+T    LRLSR LL ++  W   E A  D  E    V
Sbjct:   91 YLAMMYLCHAQVWSFASEFILHDGLVTLVSMFDHDDMHMRGQALDTFTQLTSNPAFDWFQQ-----PTTALEKALHHKMLLLPNSASIVQQLVHNQ-ATPELS-----------------FCALQILAFYMSWVRKLYTKG-ELRLSRALLDSLSAW--TESASPDEAELAANV 238          
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Match: A0A7S4FJA5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FJA5_9EUGL)

HSP 1 Score: 79.3 bits (194), Expect = 2.910e-12
Identity = 61/200 (30.50%), Postives = 92/200 (46.00%), Query Frame = 1
Query:    1 QIPHLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIFVNIT-AHRG-FNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSWGTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLSRQLLQAIEDWGGKEDARTDGCE--KGLYVPLSSSQTLSPSGEHGEEDV 588
            Q P L+ LYL H   W+    F    GL  L+ L    NL IR   V +   ++  + G F+W+       + A  +  +HR LL L S   F+   + N              +GE  TFP G L+CL++LA WLS+VR   T D  LRL + +L A++    ++D  T+  E  + L+        L    ++G +DV
Sbjct:    4 QAPSLTCLYLLHHHDWERARPFAAGNGLRVLAGLVGDPNLYIRGQVVEMLHRLSNGYEGQFDWWDKPKDLEDPAQGDVLVHRRLLELHSTD-FLKNCLLNI-------------KGE--TFPEGSLMCLQLLAFWLSYVRHFWTKDGVLRLGQDVLDALKAHAARKDLATEEHELAEKLFEDFGRWPALEEFEDNGIKDV 187          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18228.4887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FUN1_ECTSI2.250e-10038.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEI6_9PHAE1.450e-9137.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K1C1Z4_PYTOL9.390e-1736.53Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S0XSC3_HEMAN1.160e-1533.76Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1GZ69_HEMAN5.340e-1533.76Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1DV65_HEMAN5.380e-1533.76Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
K3XBE4_GLOUD7.140e-1533.33Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
T0QCX1_SAPDV4.930e-1432.48Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A067D3Y0_SAPPC1.520e-1331.61Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7S4FJA5_9EUGL2.910e-1230.50Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18228contigH-elongata_contig18228:4023..6948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.3
Seed ortholog evalue9e-94
Seed eggNOG ortholog2880.D7FUN1
EggNOG OGs2CJJ3@1,2S3TT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons4
Model size1800
Cds size1800
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18228.4887.1prot_H-elongata_contig18228.4887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18228 4023..6948 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.1436417-CDS-H-elongata_contig18228:4022..41071622930049.1436417-CDS-H-elongata_contig18228:4022..4107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18228 4023..4107 -
1691679261.0626664-CDS-H-elongata_contig18228:4022..41071691679261.0626664-CDS-H-elongata_contig18228:4022..4107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18228 4023..4107 -
1622930049.158636-CDS-H-elongata_contig18228:4731..54911622930049.158636-CDS-H-elongata_contig18228:4731..5491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18228 4732..5491 -
1691679261.0724819-CDS-H-elongata_contig18228:4731..54911691679261.0724819-CDS-H-elongata_contig18228:4731..5491Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18228 4732..5491 -
1622930049.1731021-CDS-H-elongata_contig18228:5584..61551622930049.1731021-CDS-H-elongata_contig18228:5584..6155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18228 5585..6155 -
1691679261.0805614-CDS-H-elongata_contig18228:5584..61551691679261.0805614-CDS-H-elongata_contig18228:5584..6155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18228 5585..6155 -
1622930049.187806-CDS-H-elongata_contig18228:6564..69481622930049.187806-CDS-H-elongata_contig18228:6564..6948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18228 6565..6948 -
1691679261.0887034-CDS-H-elongata_contig18228:6564..69481691679261.0887034-CDS-H-elongata_contig18228:6564..6948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18228 6565..6948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18228.4887.1

>prot_H-elongata_contig18228.4887.1 ID=prot_H-elongata_contig18228.4887.1|Name=mRNA_H-elongata_contig18228.4887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=600bp
QIPHLSLLYLHHWKRWDFVSAFVLAGGLHTLSSLFTHENLVIRMNAVNIF
VNITAHRGFNWFAPLARGGESATTEACLHRALLNLRSDPAFIPGLIANSW
GTPESTGAITARRGELITFPGGCLICLEVLAMWLSWVRALHTVDCRLRLS
RQLLQAIEDWGGKEDARTDGCEKGLYVPLSSSQTLSPSGEHGEEDVGCKS
NVLPRTACDHRGRLSEEIKPQAQAKNGRAHHAHHALVAAGNEASKDLTNQ
PTEVKTPESTISRRLEAGSMMEGELKERASVAKLAKTLADDFGRFPPAEE
EWEDIRGNGGGEKKESGEVLGGGLDTEAGRSDARVSDERSGVGDNDLEKC
QNGTSDIFSRWEKNADAGENASLLEEPLRKAEALKAEGNDAFGKEKFEAV
NRAYSDALCCLKSAGFTAPTLPLLKLTPGRMDGTSAAANTLRGVLHRNRA
AVLLRLFDGAMASTSTASDEMTMTKHDVSSGNICQLPRGMVRTNQNDGGQ
GSFPPFADNGGEHRALTLLDQCEEDCLRAIEVDPTDKKARFRLARCREMG
RQCRRRELAITDNESNTEQERRRRDKKAALVAKILTRRANCHEINGGTGG
back to top

mRNA from alignment at H-elongata_contig18228:4023..6948-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18228.4887.1 ID=mRNA_H-elongata_contig18228.4887.1|Name=mRNA_H-elongata_contig18228.4887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2926bp|location=Sequence derived from alignment at H-elongata_contig18228:4023..6948- (Himanthalia elongata Himel1 dioecious)
CAGATCCCACACCTTAGTCTCCTCTACCTCCACCACTGGAAGCGATGGGA CTTTGTGTCTGCATTTGTGTTGGCCGGAGGATTGCACACCCTGTCCTCCC TCTTCACCCACGAAAACCTCGTCATTCGGATGAACGCCGTCAACATTTTT GTCAACATCACCGCTCATCGGGGTTTCAATTGGTTTGCTCCGCTCGCCCG TGGCGGTGAGAGTGCCACCACGGAAGCATGCCTGCACCGCGCACTGTTAA ATCTTCGCTCGGACCCCGCGTTCATCCCGGGGCTCATCGCGAACTCATGG GGTACCCCCGAGAGCACGGGCGCGATAACGGCAAGAAGAGGGGAATTGAT TACATTCCCTGGAGGGTGTCTCATATGTCTGGAGGTAAAGGGCTTAAGGG CGGTAAAGCGGATATAGCAAAAAGTTCTGAAATAATATCCAAAAAGAGAA GCCCAAAAATATTTTTTGTCACATAGAATACGGAATCGATGCTTTGCGGA ACTCCGGGTTAAACATTTATACGGTTACCAGCAGTGGTGGATGATCATGG CACTATCATGGTACTTACCTGTAAAACCATCAGTTTCAAATACACTCGTG TTTGAAGCTTACTGTTACGAAAAATTATCGCATCGGGGGTAACAGTGGCC TTTTACCAATCTTCCATGCCTCGTGCCCGATATGATACCCTACGGAAGTA TCGCTCACATCTTTATGCATTTTCGCTGAATCATTGCGCCGTTGTGTTGC TCCAATCTCTGTACGGTCTCGTCTGCTCTTGACCGAATTTCAGGTGTTGG CGATGTGGCTCAGCTGGGTGCGCGCTCTCCACACCGTGGACTGTAGATTG CGGCTTAGCCGCCAGCTTCTCCAAGCCATCGAGGATTGGGGCGGTAAAGA AGACGCACGAACTGATGGTTGTGAGAAAGGACTATATGTACCGTTATCTT CATCACAAACATTGTCACCATCTGGCGAGCATGGAGAAGAAGACGTGGGG TGTAAATCCAACGTTTTGCCTAGAACAGCTTGTGACCATCGCGGGCGTTT ATCGGAGGAGATAAAACCCCAAGCACAAGCAAAAAACGGCCGAGCACATC ATGCACATCATGCACTTGTGGCCGCTGGGAATGAAGCTTCGAAAGATCTC ACAAACCAACCCACGGAAGTCAAGACACCAGAAAGTACGATCAGCCGTCG GCTAGAAGCGGGATCGATGATGGAGGGAGAGCTCAAGGAGCGCGCTAGTG TGGCCAAGCTCGCCAAAACCCTTGCCGACGACTTCGGCCGCTTTCCGCCG GCGGAAGAAGAGTGGGAGGATATACGTGGCAATGGTGGAGGGGAGAAGAA GGAAAGCGGGGAGGGTTTTAGAGGTCATCTGGAGGAGCGCAACATGGCGT TGGTTTCGGCATCGACTATCCCGTCGCTTCACGGTACATCAACTGATGAA AACGCAGTTTTGGGAGGAGGGTTAGATACAGAGGCGGGACGAAGCGACGC GCGTGTGAGCGACGAAAGGAGTGGAGTCGGGGACAACGACTTGGAAAAAT GCCAGAATGGGACCAGCGATATATTTTCTAGATGGGAGAAAAACGCCGAC GCCGGTGAAAATGCCTCGCTTTTGGAAGAACCTCTTCGGAAAGCCGAAGC GTTGAAAGCAGAGGGGAATGACGCATTCGGGAAAGAAAAATTTGAGGCAG TGAATCGTGCCTACTCCGACGCTCTTTGTTGTTTAAAATCCGCCGGATTC ACTGCTCCTACGCTGCCTCTACTCAAGCTCACGCCAGGAAGGATGGACGG AACGTCTGCAGCGGCGAATACGTTACGTGGAGTCTTGCATCGGAATCGCG CTGCTGTTTTGCTACGATTATTTGATGGTGCTATGGCATCCACCTCGACC GCTTCCGACGAAATGACTATGACGAAGCACGACGTCAGTAGCGGTAACAT TTGCCAGCTGCCACGTGGGATGGTGAGAACAAACCAAAACGATGGAGGCC AAGGAAGCTTCCCGCCTTTTGCAGACAACGGAGGCGAGCATCGCGCGCTT ACCCTTTTGGATCAGTGTGAGGAAGATTGCTTGAGGGCGATCGAAGTGGA CCCCACCGACAAAAAGGCACGATTCCGGTTGGCCAGGTGCCGGGAGATGG GGAGGCAATGTCGGCGGAGAGAGCTCGCTATTACTGACAACGAATCAAAT ACGGAGCAAGAACGGAGGTATTAAGTATTTGGGGTTCTTTGAACCGTGAG GTCTCCGAGTCGGCCATGACGATACCTCACTTCTCTTCCCGATGTGTTTA TGAAGTAACGGTATTTAATATAAATAGGCATTCATGCGTATACGTATTCA CTCGTCGACTTTCTTCCTCATCTTGGTTCGTGGTTCGATCTTATTGTCAC TATTTTTTACCCACTGCATCACGATTGTTTTAGCTGCTGGCCTATGGGAA ATGATGAGCAGATGTACAGCAGTCTTGAGTGCTTGGAGCTCGGGGGGTAG GGGGTGGGGGGACCTCTTGTACCAGGAGGCGTCAGTAAGTTTTCAACAAT TAGTTGACGAGGTGTGGTGTTGTCATAGGACACTGCTAAAGTTGAATCGC GAAAACCGTTTGCCTGTACCGAGGAGATGTGTGTAGATCCATACGGACGC TAGATGGGATGAGCCACGTCGTGGTAGTTGGGATTGGAAGCCGTGAACGT TGAATGACCTTATCGGTAGACAGCCAGATCAAAACAAAAGAAAACAAAAA CAAGTATTTTCGTGATGGTTATCCTGGCTGAATGATCGTCAGCACCACCC GATCGCGTTCTTCTCCTCCTCCTCTAACCCTCCGACCGCAGACGACGAGA TAAGAAAGCAGCTCTGGTGGCCAAAATCCTCACTCGGAGGGCTAATTGCC ATGAGATTAATGGGGGTACCGGCGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18228:4023..6948-

>mRNA_H-elongata_contig18228.4887.1 ID=mRNA_H-elongata_contig18228.4887.1|Name=mRNA_H-elongata_contig18228.4887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3600bp|location=Sequence derived from alignment at H-elongata_contig18228:4023..6948- (Himanthalia elongata Himel1 dioecious)
CAGATCCCACACCTTAGTCTCCTCTACCTCCACCACTGGAAGCGATGGGA
CTTTGTGTCTGCATTTGTGTTGGCCGGAGGATTGCACACCCTGTCCTCCC
TCTTCACCCACGAAAACCTCGTCATTCGGATGAACGCCGTCAACATTTTT
GTCAACATCACCGCTCATCGGGGTTTCAATTGGTTTGCTCCGCTCGCCCG
TGGCGGTGAGAGTGCCACCACGGAAGCATGCCTGCACCGCGCACTGTTAA
ATCTTCGCTCGGACCCCGCGTTCATCCCGGGGCTCATCGCGAACTCATGG
GGTACCCCCGAGAGCACGGGCGCGATAACGGCAAGAAGAGGGGAATTGAT
TACATTCCCTGGAGGGTGTCTCATATGTCTGGAGCAGATCCCACACCTTA
GTCTCCTCTACCTCCACCACTGGAAGCGATGGGACTTTGTGTCTGCATTT
GTGTTGGCCGGAGGATTGCACACCCTGTCCTCCCTCTTCACCCACGAAAA
CCTCGTCATTCGGATGAACGCCGTCAACATTTTTGTCAACATCACCGCTC
ATCGGGGTTTCAATTGGTTTGCTCCGCTCGCCCGTGGCGGTGAGAGTGCC
ACCACGGAAGCATGCCTGCACCGCGCACTGTTAAATCTTCGCTCGGACCC
CGCGTTCATCCCGGGGCTCATCGCGAACTCATGGGGTACCCCCGAGAGCA
CGGGCGCGATAACGGCAAGAAGAGGGGAATTGATTACATTCCCTGGAGGG
TGTCTCATATGTCTGGAGGTGTTGGCGATGTGGCTCAGCTGGGTGCGCGC
TCTCCACACCGTGGACTGTAGATTGCGGCTTAGCCGCCAGCTTCTCCAAG
CCATCGAGGATTGGGGCGGTAAAGAAGACGCACGAACTGATGGTTGTGAG
AAAGGACTATATGTACCGTTATCTTCATCACAAACATTGTCACCATCTGG
CGAGCATGGAGAAGAAGACGTGGGGTGTAAATCCAACGTTTTGCCTAGAA
CAGCTTGTGACCATCGCGGGCGTTTATCGGAGGAGATAAAACCCCAAGCA
CAAGCAAAAAACGGCCGAGCACATCATGCACATCATGCACTTGTGGCCGC
TGGGAATGAAGCTTCGAAAGATCTCACAAACCAACCCACGGAAGTCAAGA
CACCAGAAAGTACGATCAGCCGTCGGCTAGAAGCGGGATCGATGATGGAG
GGAGAGCTCAAGGAGCGCGCTAGTGTGGCCAAGCTCGCCAAAACCCTTGC
CGACGACTTCGGCCGCTTTCCGCCGGCGGAAGAAGAGTGGGAGGATATAC
GTGGCAATGGTGGAGGGGAGAAGAAGGAAAGCGGGGAGGGTGTTGGCGAT
GTGGCTCAGCTGGGTGCGCGCTCTCCACACCGTGGACTGTAGATTGCGGC
TTAGCCGCCAGCTTCTCCAAGCCATCGAGGATTGGGGCGGTAAAGAAGAC
GCACGAACTGATGGTTGTGAGAAAGGACTATATGTACCGTTATCTTCATC
ACAAACATTGTCACCATCTGGCGAGCATGGAGAAGAAGACGTGGGGTGTA
AATCCAACGTTTTGCCTAGAACAGCTTGTGACCATCGCGGGCGTTTATCG
GAGGAGATAAAACCCCAAGCACAAGCAAAAAACGGCCGAGCACATCATGC
ACATCATGCACTTGTGGCCGCTGGGAATGAAGCTTCGAAAGATCTCACAA
ACCAACCCACGGAAGTCAAGACACCAGAAAGTACGATCAGCCGTCGGCTA
GAAGCGGGATCGATGATGGAGGGAGAGCTCAAGGAGCGCGCTAGTGTGGC
CAAGCTCGCCAAAACCCTTGCCGACGACTTCGGCCGCTTTCCGCCGGCGG
AAGAAGAGTGGGAGGATATACGTGGCAATGGTGGAGGGGAGAAGAAGGAA
AGCGGGGAGGTTTTGGGAGGAGGGTTAGATACAGAGGCGGGACGAAGCGA
CGCGCGTGTGAGCGACGAAAGGAGTGGAGTCGGGGACAACGACTTGGAAA
AATGCCAGAATGGGACCAGCGATATATTTTCTAGATGGGAGAAAAACGCC
GACGCCGGTGAAAATGCCTCGCTTTTGGAAGAACCTCTTCGGAAAGCCGA
AGCGTTGAAAGCAGAGGGGAATGACGCATTCGGGAAAGAAAAATTTGAGG
CAGTGAATCGTGCCTACTCCGACGCTCTTTGTTGTTTAAAATCCGCCGGA
TTCACTGCTCCTACGCTGCCTCTACTCAAGCTCACGCCAGGAAGGATGGA
CGGAACGTCTGCAGCGGCGAATACGTTACGTGGAGTCTTGCATCGGAATC
GCGCTGCTGTTTTGCTACGATTATTTGATGGTGCTATGGCATCCACCTCG
ACCGCTTCCGACGAAATGACTATGACGAAGCACGACGTCAGTAGCGGTAA
CATTTGCCAGCTGCCACGTGGGATGGTGAGAACAAACCAAAACGATGGAG
GCCAAGGAAGCTTCCCGCCTTTTGCAGACAACGGAGGCGAGCATCGCGCG
CTTACCCTTTTGGATCAGTGTGAGGAAGATTGCTTGAGGGCGATCGAAGT
GGACCCCACCGACAAAAAGGCACGATTCCGGTTGGCCAGGTGCCGGGAGA
TGGGGAGGCAATGTCGGCGGAGAGAGCTCGCTATTACTGACAACGAATCA
AATACGGAGCAAGAACGGAGTTTTGGGAGGAGGGTTAGATACAGAGGCGG
GACGAAGCGACGCGCGTGTGAGCGACGAAAGGAGTGGAGTCGGGGACAAC
GACTTGGAAAAATGCCAGAATGGGACCAGCGATATATTTTCTAGATGGGA
GAAAAACGCCGACGCCGGTGAAAATGCCTCGCTTTTGGAAGAACCTCTTC
GGAAAGCCGAAGCGTTGAAAGCAGAGGGGAATGACGCATTCGGGAAAGAA
AAATTTGAGGCAGTGAATCGTGCCTACTCCGACGCTCTTTGTTGTTTAAA
ATCCGCCGGATTCACTGCTCCTACGCTGCCTCTACTCAAGCTCACGCCAG
GAAGGATGGACGGAACGTCTGCAGCGGCGAATACGTTACGTGGAGTCTTG
CATCGGAATCGCGCTGCTGTTTTGCTACGATTATTTGATGGTGCTATGGC
ATCCACCTCGACCGCTTCCGACGAAATGACTATGACGAAGCACGACGTCA
GTAGCGGTAACATTTGCCAGCTGCCACGTGGGATGGTGAGAACAAACCAA
AACGATGGAGGCCAAGGAAGCTTCCCGCCTTTTGCAGACAACGGAGGCGA
GCATCGCGCGCTTACCCTTTTGGATCAGTGTGAGGAAGATTGCTTGAGGG
CGATCGAAGTGGACCCCACCGACAAAAAGGCACGATTCCGGTTGGCCAGG
TGCCGGGAGATGGGGAGGCAATGTCGGCGGAGAGAGCTCGCTATTACTGA
CAACGAATCAAATACGGAGCAAGAACGGAGACGACGAGATAAGAAAGCAG
CTCTGGTGGCCAAAATCCTCACTCGGAGGGCTAATTGCCATGAGATTAAT
GGGGGTACCGGCGGGACGACGAGATAAGAAAGCAGCTCTGGTGGCCAAAA
TCCTCACTCGGAGGGCTAATTGCCATGAGATTAATGGGGGTACCGGCGGG
back to top