mRNA_H-elongata_contig182270.4885.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182270.4885.1
Unique NamemRNA_H-elongata_contig182270.4885.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.630e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 DNEGAIMRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 186
            DNEGAI    N  SS R++H+DV+HH +R+  E  V+ + +V S+EQHAD+LTKAL  N FE
Sbjct:  313 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFE 374
[Close]
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.900e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 DNEGAIMRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 186
            DNEGAI    N  SS R++H+DV+HH +R+  E  V+ + +V S+EQHAD+LTKAL  N FE
Sbjct:  480 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFE 541
[Close]
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.920e-12
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 DNEGAIMRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 186
            DNEGAI    N  SS R++H+DV+HH +R+  E  V+ + +V S+EQHAD+LTKAL  N FE
Sbjct: 1208 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLFE 1269
[Close]
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 6.570e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 DNEGAIMRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 186
            DNEGAI    N  SS R++H+DV+HH +R+  E  V+ + +V S+EQHAD+LTKAL  + FE
Sbjct:  186 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFE 247
[Close]
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5JQF9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.010e-11
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 DNEGAIMRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 186
            DNEGAI    N  SS R++H+DV+HH +R+  E  V+ + +V S+EQH D+LTKAL  N FE
Sbjct:  515 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHTDILTKALPRNLFE 576
[Close]
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.020e-11
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 DNEGAIMRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 186
            DNEGAI    N FSS R++H+DV+HH +R+  E  V+++ +V  +EQHAD+L KAL  N FE
Sbjct: 1189 DNEGAIALAENPFSSSRSKHIDVRHHFLRNLTEEGVIKVTHVPIKEQHADILAKALARNLFE 1250
[Close]
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.380e-11
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 DNEGAIMRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTF 183
            DNEGAI    N  SS R++H+DV+HH +R+  E  V+ + +V S+EQHAD+LTKAL  N F
Sbjct:  653 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLF 713
[Close]
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.390e-11
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 DNEGAIMRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 186
            DNEGAI    N  SS R++H+DV+HH +R+  E  V+ + +V S+EQHAD+LTKAL  + FE
Sbjct: 1119 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFE 1180
[Close]
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.390e-11
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 DNEGAIMRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 186
            DNEGAI    N  SS R++H+DV+HH +R+  E  V+ + +V S+EQHAD+LTKAL  + FE
Sbjct: 1329 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRDLFE 1390
[Close]
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.690e-11
Identity = 32/62 (51.61%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:    1 DNEGAIMRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKALDINTFE 186
            DNEGAI    N  SS R++H+DV+HH +R+  E  V+ + +V S+ QHAD+LTKAL  N FE
Sbjct:  218 DNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKVQHADILTKALPRNLFE 279
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182270.4885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRE7_9PHAE2.630e-1253.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE2.900e-1253.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH25_9PHAE2.920e-1253.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCG6_9PHAE6.570e-1251.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQF9_9PHAE1.010e-1151.61DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K622_9PHAE1.020e-1151.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV80_9PHAE1.380e-1152.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3I1_9PHAE1.390e-1151.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.390e-1151.61Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTP8_9PHAE1.690e-1151.61Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182270contigH-elongata_contig182270:538..726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size189
Cds size171
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.0141943-CDS-H-elongata_contig182270:537..7081622930049.0141943-CDS-H-elongata_contig182270:537..708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182270 538..708 -
1691679261.0193443-CDS-H-elongata_contig182270:537..7081691679261.0193443-CDS-H-elongata_contig182270:537..708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182270 538..708 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930049.031026-UTR-H-elongata_contig182270:708..7261622930049.031026-UTR-H-elongata_contig182270:708..726Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig182270 709..726 -
1691679261.02778-UTR-H-elongata_contig182270:708..7261691679261.02778-UTR-H-elongata_contig182270:708..726Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig182270 709..726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182270.4885.1prot_H-elongata_contig182270.4885.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182270 538..708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182270.4885.1

>prot_H-elongata_contig182270.4885.1 ID=prot_H-elongata_contig182270.4885.1|Name=mRNA_H-elongata_contig182270.4885.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
MRTTNRFSSRRTRHVDVKHHIVRDTVESVVVRIHYVKSREQHADVLTKAL
DINTFET
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mRNA from alignment at H-elongata_contig182270:538..726-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182270.4885.1 ID=mRNA_H-elongata_contig182270.4885.1|Name=mRNA_H-elongata_contig182270.4885.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig182270:538..726- (Himanthalia elongata Himel1 dioecious)
GATAATGAAGGAGCTATCATGAGGACGACCAACCGTTTCAGCAGCAGGCG
TACAAGACACGTGGACGTGAAACACCACATTGTCCGCGATACGGTAGAGA
GTGTTGTAGTTCGAATCCATTACGTGAAGTCGAGAGAGCAACATGCCGAT
GTGCTGACGAAAGCGTTGGATATAAACACCTTTGAAACA
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Coding sequence (CDS) from alignment at H-elongata_contig182270:538..726-

>mRNA_H-elongata_contig182270.4885.1 ID=mRNA_H-elongata_contig182270.4885.1|Name=mRNA_H-elongata_contig182270.4885.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig182270:538..726- (Himanthalia elongata Himel1 dioecious)
ATGAGGACGACCAACCGTTTCAGCAGCAGGCGTACAAGACACGTGGACGT
GAAACACCACATTGTCCGCGATACGGTAGAGAGTGTTGTAGTTCGAATCC
ATTACGTGAAGTCGAGAGAGCAACATGCCGATGTGCTGACGAAAGCGTTG
GATATAAACACCTTTGAAACAATGAGGACGACCAACCGTTTCAGCAGCAG
GCGTACAAGACACGTGGACGTGAAACACCACATTGTCCGCGATACGGTAG
AGAGTGTTGTAGTTCGAATCCATTACGTGAAGTCGAGAGAGCAACATGCC
GATGTGCTGACGAAAGCGTTGGATATAAACACCTTTGAAACA
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