mRNA_H-elongata_contig182234.4884.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: D7FY49_ECTSI (Similar to collagen, partial n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY49_ECTSI) HSP 1 Score: 165 bits (418), Expect = 1.170e-46 Identity = 102/186 (54.84%), Postives = 133/186 (71.51%), Query Frame = 1
Query: 13 CPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIG-NESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 564
CPC S +SF+M G T+V VN+AV++D SGSV ++ + KEFAKN A+FA+ NLF NGG+AS+ QF+SD + GTFYSLEDFN FVDA+ GGTDI GI++ R LL+A+P+A++ +MIV TDG + +E+D ARA+G LYAVGVGS S + LLAI G E NVF VD+FE+L
Sbjct: 51 CPCEAGSQYSFTMEGQTTVTANTVNVAVIIDASGSVGTADWELSKEFAKNTVASFAEQNLFTNGGSASFAQFASDAS--EGGTFYSLEDFNAFVDADVKHSGGTDIIDGIAKGRELLSASPAATS-FMIVTTDGAAPDPQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 233
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: A0A6H5JRK3_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK3_9PHAE) HSP 1 Score: 167 bits (423), Expect = 6.390e-45 Identity = 103/188 (54.79%), Postives = 133/188 (70.74%), Query Frame = 1
Query: 7 TTCPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIG-NESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 564
T CPC S +SF+M G T+V VN+AV++D SGSV ++ + KEFAKN A+FA+ NLF NGG+AS+ QFSS + GTFYSLEDFN FVDA+ GGTDI GI++ R LL+A+P+A++ +MIV TDG + +E+D ARA+G LYAVGVGS S + LLAI G E NVF VD+FE+L
Sbjct: 66 TNCPCEAGSQYSFTMEGQTTVTANTVNVAVIIDASGSVSTADWELSKEFAKNTVASFAEQNLFTNGGSASFAQFSSSAS--EGGTFYSLEDFNAFVDADAKYSGGTDIIDGIAKGRELLSASPAATS-FMIVTTDGAAPDPQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 250
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI) HSP 1 Score: 163 bits (413), Expect = 3.350e-43 Identity = 101/186 (54.30%), Postives = 131/186 (70.43%), Query Frame = 1
Query: 13 CPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIG-NESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 564
CPC S +SF+M G T+V VN+AV++D S SV ++ + KEFAKN A+FA NLF NGG+AS+ QFSSD + GTFYSLEDFN FVDA+ GGTDI GI++ R LL+A+P+ ++ +MIV TDG++ +E+D ARA+G LYAVGVGS S + LLAI G E NVF VD+FE+L
Sbjct: 58 CPCEAGSQYSFTMEGQTTVTANTVNVAVIIDASVSVGTADWELSKEFAKNTVASFAQQNLFTNGGSASFAQFSSDAS--EGGTFYSLEDFNAFVDADAKYSGGTDIIDGIAKGRELLSASPTTTS-FMIVTTDGVAPDPQDEADAARAEGTILYAVGVGSGPSQENLLAIGGDEANVFDVDNFEEL 240
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE) HSP 1 Score: 158 bits (399), Expect = 1.110e-41 Identity = 97/188 (51.60%), Postives = 133/188 (70.74%), Query Frame = 1
Query: 10 TCPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDAND-YIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIG-NESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 564
TCPC +SF+M G T+V VN+AV++D SGSV ++ + + FAKN ++FAD NLF NGG+AS QFS+ + GTFYSLEDFNDFVD + Y GT+I AGI++ R LLNA+P+ ++ +MIV+TDG S+ +E+D ARA+G +YAVGVGS ++ +LL IAG + N FSVDDF++L
Sbjct: 36 TCPCDSDGQYSFTMEGKTTVTANTVNVAVIIDSSGSVNSDEWDMSIAFAKNAVSSFADQNLFTNGGSASIAQFSNSAS--EGGTFYSLEDFNDFVDGSTKYQSQGTNIIAGIAKGRELLNASPTTTS-FMIVITDGQSSSPKDEADAARAEGTIVYAVGVGSGPTESVLLDIAGDDSNKFSVDDFDEL 220
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: D8LLU2_ECTSI (Similar to integrin alpha Hr1-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU2_ECTSI) HSP 1 Score: 149 bits (377), Expect = 1.360e-40 Identity = 96/188 (51.06%), Postives = 125/188 (66.49%), Query Frame = 1
Query: 10 TCPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDAND-YIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIGN-ESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 564
TCPC +SF+M G T+V VN+AV++D SGSV + + + FAK+ ++FAD NLF NGG+AS QFSS + GTFYSLEDFN FVD N Y GGTDI GI++ R LL A+P A+ ++MIV TDG S+ E+D AR +G +YAVGVG+ + +ILL I G E NVF VD F++L
Sbjct: 36 TCPCDSDGQYSFTMEGKTTVTANTVNVAVIIDSSGSVDDDEWDMSMAFAKDAVSSFADQNLFTNGGSASIAQFSSSAS--EGGTFYSLEDFNAFVDGNTKYSSGGTDIIDGIAKGRELLKASP-ATTSFMIVTTDGQSSSPKAEADAARDEGTIVYAVGVGTGPTQEILLDIGGEEANVFDVDGFDEL 220
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: A0A6H5JR61_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR61_9PHAE) HSP 1 Score: 141 bits (356), Expect = 4.300e-37 Identity = 87/166 (52.41%), Postives = 116/166 (69.88%), Query Frame = 1
Query: 79 VNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDY---IGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDG-ISTIGNESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 564
VN+AV++D SGSV ++ + EFAKN A+FA+ NLF NGG+AS+ QFSS + GTFYSLEDF+ FVDA GG T+I +GI++ R LL A+P+ ++ YMIV TDG + +E+D ARA+G +YAVGVGS + + LLAI G E NVF VD+FE+L
Sbjct: 108 VNVAVIIDSSGSVSTADWELSMEFAKNTVASFAEQNLFTNGGSASFAQFSSSAS--EGGTFYSLEDFDAFVDAETKYATFGGSTNIISGIAKGRELLGASPTTTS-YMIVTTDGEADSPQDEADAARAEGTIMYAVGVGSVPTAETLLAIGGDEANVFDVDNFEEL 270
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: D7G513_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G513_ECTSI) HSP 1 Score: 139 bits (351), Expect = 6.910e-35 Identity = 91/195 (46.67%), Postives = 122/195 (62.56%), Query Frame = 1
Query: 1 FSTTCPCGVTS-FSFSMVGATSVVDLVVNLAVVLDGSGSVLAEN--FLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTIGN----ESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 564
F+ +CPCG S +F + G TSV VN+AV++D SGS+ + FL+EKEFAKN+ A+FA NLF NGGTASY FS D GTF S +FN+FVD +I G T+I+AG+S+ R LL S +++I++TDG G E+D AR +G +YAVGVG VS+ LL+I G NVF +F +L
Sbjct: 40 FAPSCPCGAGSELTFQIEGETSVEANKVNVAVIIDSSGSIFDIDGAFLLEKEFAKNVAASFAAKNLFTNGGTASYASFSDAAS--DGGTFGSEAEFNEFVDNASWIEGDTNIEAGLSKGRELLANGTSTRTSFLILITDGDWNRGGDPQIEADAARDEGTIVYAVGVGPDVSEATLLSIGGDLTNVFDASNFTEL 232
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE) HSP 1 Score: 139 bits (351), Expect = 6.940e-35 Identity = 88/181 (48.62%), Postives = 122/181 (67.40%), Query Frame = 1
Query: 31 SFSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDTGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAAYMIVLTDGISTI--GNESDEARADGIT-LYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 564
S +F+M GAT++ +VN+ +V+DGSGS+++ ++++E++FAK+ AAFA N+F NGGTASYVQFS+ D GTF S E F++ VD+ GG TDI GI R LLN P AS ++M+++TDG S + E RAD T ++AVGVGS +S + LL IAG E NVFSV +F L
Sbjct: 34 SLTFTMEGATTLRTNIVNVVIVVDGSGSIVSSDWILEQQFAKDTVAAFARRNIFDNGGTASYVQFSTSTY--DEGTFTSTESFDEHVDSVIQWGGDTDIADGIIAGRALLNENP-ASFSFMVLITDGESYTDPSTAAQETRADNTTTIFAVGVGSQISTETLLDIAGEESNVFSVTNFSSL 211
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: UPI0016028F1F (collagen alpha-3(VI) chain-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016028F1F) HSP 1 Score: 75.5 bits (184), Expect = 1.700e-12 Identity = 63/164 (38.41%), Postives = 86/164 (52.44%), Query Frame = 1
Query: 94 VLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDDT-GTFYSLEDFNDFVDANDYIGGGTDIDAGISEARV----LLNAAPSASAAYMIVLTDGIS--TIGNESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 564
VLDGSGSV +NF K F K + +FA + + S Q+S+ V + T+ S+ + N VDA Y GGGT + E R N + I+LTDG+S T+ + A GI+LY VG+GSSV + LLAI G+ DNVFS+ +F L
Sbjct: 1180 VLDGSGSVGHDNFQRMKSFVKRVAGSFA---IGPSSAQISLFQYSNFVMQEFALDTYESIGEINQAVDAVMYQGGGTATGLALYEMRQYGFSFANGGRPGTRRVAILLTDGMSSDTVDKHAMAAWQAGISLYVVGIGSSVDMNELLAIGGTPDNVFSLGNFGQL 1340
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Match: UPI001600741D (uncharacterized protein LOC118432772 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600741D) HSP 1 Score: 73.2 bits (178), Expect = 1.100e-11 Identity = 57/169 (33.73%), Postives = 88/169 (52.07%), Query Frame = 1
Query: 79 VNLAVVLDGSGSVLAENFLVEKEFAKNITAAFADLNLFANGGTASYVQFSSDVDSDD-TGTFYSLEDFNDFVDANDYIGGGTDIDAGISEARVLLNAAPSASAA----YMIVLTDGIS--TIGNESDEARADGITLYAVGVGSSVSDDILLAIAGSEDNVFSVDDFEDL 564
V+L +LDGSGSV NF + K+F +++ +F N+ + VQFS V ++ TF + VD Y+ G T A I R + P+ + A ++IV+TDG+S + + AR +GI+++AVG+GS V D LL IAG+ ++DF L
Sbjct: 2228 VDLVFLLDGSGSVTEANFELVKDFTQDVIRSF---NVSTSATRVGVVQFSDTVRTEFFLNTFQTKSQVLQAVDGLGYLQGNTLTGAAIDFVRTSTFSTPAGNRAGQPDFLIVVTDGLSQDNVAIPAQTARNNGISIFAVGIGSEVDADTLLQIAGTPSRTLQINDFAGL 2393 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182234.4884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig182234.4884.1 >prot_H-elongata_contig182234.4884.1 ID=prot_H-elongata_contig182234.4884.1|Name=mRNA_H-elongata_contig182234.4884.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=188bp FSTTCPCGVTSFSFSMVGATSVVDLVVNLAVVLDGSGSVLAENFLVEKEFback to top mRNA from alignment at H-elongata_contig182234:77..1246- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig182234.4884.1 ID=mRNA_H-elongata_contig182234.4884.1|Name=mRNA_H-elongata_contig182234.4884.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1170bp|location=Sequence derived from alignment at H-elongata_contig182234:77..1246- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig182234:77..1246- >mRNA_H-elongata_contig182234.4884.1 ID=mRNA_H-elongata_contig182234.4884.1|Name=mRNA_H-elongata_contig182234.4884.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1128bp|location=Sequence derived from alignment at H-elongata_contig182234:77..1246- (Himanthalia elongata Himel1 dioecious)back to top |