mRNA_H-elongata_contig182169.4882.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182169.4882.1
Unique NamemRNA_H-elongata_contig182169.4882.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5KEM4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEM4_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 9.400e-37
Identity = 97/293 (33.11%), Postives = 152/293 (51.88%), Query Frame = 1
Query:   16 DLDMAYLEANVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGGEPGGGT----KLSALVDADFGT-----------------------------CPDTCRSVSGGAVMMAGGAISWFSRVQK-VTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV-AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 789
            D++ A++ + +EE++Y+ LP+A       +  L K++YGL  A           L   G ++  AD CVFR I +G VV++++V VDD+      +R ++    DL    P+K+LGE  +Y GC   R+    Y  E  GGT     L    DADF +                                  RSVSGG V   GGA+SWFSR QK VT + ++E+EY  L ++V ++ FLRQ+  FM   + +  I I EDN+GAI++A++  S+  ++H +++HH +R+ +E
Sbjct:   17 DIEQAFVRSELEEDVYMRLPQACGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVELGSEQYMADACVFRLIENGCVVLILVVHVDDIFTVRERERYDKFGT-DLSKSVPVKNLGELRWYSGCFYERNKETEY--EVVGGTVEGFSLRGYADADFASKAADLGIXIFETMRGGRVTLGKXXXXXXXXXXXRRSVSGGIVTCGGGAVSWFSRRQKCVTLSTTTEAEYVVLGDVVKKILFLRQIWRFMLPQVGMPCIPIFEDNQGAIQLAQNPISNSNSKHTDVRHHFLRELVE 306          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5KIL0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL0_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.140e-32
Identity = 106/334 (31.74%), Postives = 154/334 (46.11%), Query Frame = 1
Query:   55 EIYVELPEAYRDSRKQVGLLKKAMYGLVHAG------LL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRD----------------LGIIYGGEPGGGTKLSA-----------------------------------------------------------------LVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV--AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 789
            +I + +PE       ++  L K++YGL  A        L  K     L A GF++  ADPCVFR +  G VV++++V  DD+  A  TK   +Q  +DL    P+K LGE  +Y GC+  RD                LG  YG E GGG  L                                                                    VDAD+ +     RSVSGG VM AGGAI+WFS+ QK    +++++EY A+A+M  E+ FLRQV  FM LP ++   I ++EDNEGAI++AKH  S+  ++H++++HH +R  ++
Sbjct:  699 DICMRMPEGRGALSGKIVQLNKSLYGLRQASREWEWYALLKKC----LLALGFEQCMADPCVFRFVEGGEVVLLLVVHADDIF-AVGTKERCDQFGKDLGEYVPVKSLGELKWYSGCYYERDREAGRLTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEHPFRALVGSLLWIALLTRPDIANSVRAVARTSSFGISFQRGTVSGFSLITFVDADYASVAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFM-LPKELRPCIPLYEDNEGAIQIAKHPVSNSNSKHIDVRHHFLRQLVD 1026          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: H3HA00_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HA00_PHYRM)

HSP 1 Score: 135 bits (341), Expect = 1.430e-32
Identity = 89/268 (33.21%), Postives = 152/268 (56.72%), Query Frame = 1
Query:   10 QLDLDMAYLEANVEEEIYVELPEAY--RDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLR----QVGEFMTLPIDVAIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIEGG 795
            Q+D+  A+L   ++E+IY+  P+ Y   D    V  LK+++YGL  +  + ++T    +   GF++ ++D CV+ +   G  ++ + ++VDDL++AS+     E     L   F + DLGE  Y+LG  I +D  ++ G      TK +           D  ++ SG A MM GG ISW S+ Q+  A +S+E+EY AL+E   E  +L+    ++GE  +   D A+KI+EDN+G+I +AK+    +RT+H++I++H VR+ +E G
Sbjct:  267 QMDVKTAFLNGVLDEDIYMAQPDGYVDEDHPDHVCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLK-RDGQDMIFVALYVDDLVLASSNDELLESTKHALSKRFEMTDLGELEYFLGMEIEQD--VVTGKMSMRQTKFAK----------DILQNTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMAS---DEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDG 518          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5K7Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Y0_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 1.710e-32
Identity = 89/260 (34.23%), Postives = 139/260 (53.46%), Query Frame = 1
Query:   16 DLDMAYLEANVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV--AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 789
            D+D A++ A ++E+I++ LPE       ++  L K++YGL  A           L A GF++  AD CVF  +  G VV++++V VDD+  A  TK   +Q  +DL    P+K LGE  +                                        SVSGG VM AGGAI+WFS+ QK    ++++++Y A+A+M  E+  LRQV  FM LP ++   I +HEDNEGAI++AKH  S+  ++H++++HH +R  ++
Sbjct: 1528 DIDQAFVRAPLKEDIFMRLPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCVFHLVEGGEVVLLLVVHVDDIF-AVGTKERCDQFGKDLGEYVPVKSLGELKW----------------------------------------SVSGGVVMCAGGAIAWFSKTQKCVTLSTTQADYVAMADMGKEILLLRQVWRFM-LPKELRPCIPLHEDNEGAIQVAKHPISNSNSKHIDVRHHFLRQLVD 1745          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A8H6GDH3_FUSOX (Uncharacterized protein n=1 Tax=Fusarium oxysporum f. sp. conglutinans TaxID=100902 RepID=A0A8H6GDH3_FUSOX)

HSP 1 Score: 127 bits (319), Expect = 3.510e-29
Identity = 82/281 (29.18%), Postives = 150/281 (53.38%), Query Frame = 1
Query:    1 EARQLDLDMAYLEANVEEEIYVELPEA---YRD----------SRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGG---EPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVAIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIEGG 795
            E  Q+D+  A+LE +++EE+++E+PE    Y D          S +++  L K++YGL  A     K     LE+  F+++ +D  V+     G   V+I+ +VDD L+  + K   +     L   F + DLG   ++LG   TRD G++ GG   +P     ++A  D+D+     T RS  G  V + G  +SW ++  +  A +++E+EY AL++   EL + R +   + LP+ + I ++ DN+G++K+ ++    +RT+H+ +  H +R+ +E G
Sbjct: 1026 EIEQMDVSTAFLEGDLDEEVFIEMPEGLVEYFDQHPEDRPPGFSTEKICKLIKSLYGLKQAPRQWQKKLKETLESLDFRQATSDTAVYHNPTTG---VIIITYVDDFLIMGSNKEAIQGYKARLGEIFTMTDLGPVSHFLGQ--TRDHGLVLGGVKKDPESAWSITAWADSDWKGDTVTGRSTFGWLVQLEGSTVSWRAKRHETVALSTTEAEYTALSQCARELAWTRNLFSELLLPLHMPIPLNGDNQGSLKLCRNPELHQRTKHIPLTEHHIREEVEAG 1301          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 8.770e-29
Identity = 86/301 (28.57%), Postives = 147/301 (48.84%), Query Frame = 1
Query:   16 DLDMAYLEANVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASA-------TKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDL-----------------------------------GIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVA-IKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 789
            D+  A++++ +E+++++ LP+        +  L K++YGL  A           L   GF +  AD CVFR +  G V+++I+V V  L+  +        T  DE +A    C+  P ++L  +L +L      D+                                   GI +      G  +   VDAD  +     RSVSGG VM  GG ++WFSR QK    +++E EY A+A+++ E+ FLRQV   M L  D++ I + EDN+GAI++A +  ++  ++H++++HH +R+ +E
Sbjct:   39 DIQQAFVQSELEDDVFMRLPQGCGRLSGLIVKLYKSLYGLKQASRQWHAHLTKCLLLLGFVQCLADACVFRLMEDGCVIMIIVVHVGFLMWLATXPVSVKLTDFDENEA----CADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVE 335          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.020e-28
Identity = 89/268 (33.21%), Postives = 144/268 (53.73%), Query Frame = 1
Query:    1 EARQLDLDMAYLEANVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRD--LGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVA-IKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIEGG 795
            E   LD++ A++++ ++ E++++LP        ++  L K+ YGL  A     K    +L   GF++S +DPCV R ++   V+ +I + VDD+L A  TKR  E  V  L    P ++LGE   +LGC  +RD   G I   + G     S   D+ F   P   RS      + AG  +SWFS  QK  + ++SE+EY A+ + V E  F+  + +F+        I + EDNEGAI +A++  SS R++H++++HH +R+  E G
Sbjct:  253 ELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSWYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIVEALGDSLPTRNLGEVRLFLGCAFSRDREAGTIEISQEG--YIRSVFRDSIF-VAP--ARSPLPLPTIAAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEG 514          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5KBK7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK7_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.080e-28
Identity = 83/235 (35.32%), Postives = 135/235 (57.45%), Query Frame = 1
Query:  112 LKKAMYGLVHAGLL*SKTFGIE----LEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGGEPGGGTKLS--ALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVA-IKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIEGG 795
            +++A+YGL  +G    + +G E    L   G+++ + DPCVFR+++ G VV +I+++VDD+LVA A + + E+    L   FP+KDLGE  +Y GC I  D+         G TKLS    +++         RS +G AV + G  +  F++ Q VTA ++SE+EY A  E V E  F+  V  F+      A IK+ EDN+GA+ + ++ FSS R++H+++  H +R+  + G
Sbjct:  821 VERALYGLKQSG----REWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA-ADEGEREELFAALNKKFPVKDLGECTWYDGCAIAMDV-------ENGVTKLSRTGYIESVLKR-----RSTTGSAVTVRGTVVCAFTKTQPVTAQSTSEAEYVAAGEGVKEAVFVLGVLSFIAPEASGAKIKVLEDNKGALALIENPFSSARSKHIDVGFHFIRELFKSG 1038          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: A0A6H5L6V8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6V8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.250e-27
Identity = 87/321 (27.10%), Postives = 145/321 (45.17%), Query Frame = 1
Query:   16 DLDMAYLEANVEEEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVR---------------------------DLCSCFPIKDLGEALYYLGCHITRDL-----------------------------------GIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDV-AIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIE 789
            D++ A++ + +EE++Y+ LP+        +  L K++YGL  A           L A GF++  AD CVFR I  G VV++++V VDD+      +R ++                               ++ + +P + L  +L +L      D+                                   GI        G  L    DADF +     RSVSGG V   GGA+SWFSR QK    +++E+EY AL ++VN++ FL Q+  FM   + +  I + EDN+GAI++ ++  S+  ++H+++ HH +R+  E
Sbjct:  973 DIEQAFVRSELEEDVYMRLPQGCGALSGMIVKLGKSLYGLRQASRQWHAMLKRCLVALGFEQCMADACVFRLIEDGCVVLILVVHVDDIFAVGERERCDKLGADLNKVYGVVGGENVPMSSGVKLPDFDADEMETDYPFRQLVGSLMWLATQTRPDIANAVRAVARYCSSPKQVHWDAAIGILGYARRTSHFGISLQRRTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVNDMLFLSQIWHFMLPQVGMPCIPVFEDNQGAIQLVQNPISNSNSKHIDVWHHFLRELEE 1293          
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Match: F2U4Z5_SALR5 (Integrase catalytic domain-containing protein n=2 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U4Z5_SALR5)

HSP 1 Score: 119 bits (298), Expect = 1.700e-26
Identity = 83/269 (30.86%), Postives = 136/269 (50.56%), Query Frame = 1
Query:   10 QLDLDMAYLEANVEEEIYVELPEAYRD----SRKQVGL---LKKAMYGLVHAGLL*SKTFGIELEAKGFQRSQADPCVFRRILHGLVVVVIMVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGIIYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVAIKIHEDNEGAIKMAKHRFSSRRTRHVNIKHHIVRDAIEGG 795
            QLD   AYL+A+++EE+Y+ELP  + D    +++  G    L K +YGL  AG   +K     L+  G+ +S  D C+F ++        I+ +VDDL+++ +++R      + +   F  +DLG      G   TR   +           L    DA FGT   T RS +G    + G  +SW SR+Q   A +++E+EY A++    ++ FLRQ+   +  P   A K+  DN+ AI +     +  RT+H+ ++HH VR+ I  G
Sbjct:  447 QLDFKSAYLQADLKEELYMELPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAWAKKLHTFLKTNGWAQSNVDACLFTKLHDDGQRTWIITYVDDLIISGSSERHIRACKQQIKESFEAEDLGPLTCRTG---TRKHQL----------DLVCYSDASFGTDQLTGRSTTGFTCYINGCLVSWSSRLQPTVALSTAEAEYMAISAAAQDVVFLRQLLMDLDEPEAGATKMLTDNQAAIAIGNDHVTKPRTKHIRVRHHFVRELIADG 702          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182169.4882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEM4_9PHAE9.400e-3733.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KIL0_9PHAE1.140e-3231.74Integrase catalytic domain-containing protein n=1 ... [more]
H3HA00_PHYRM1.430e-3233.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K7Y0_9PHAE1.710e-3234.23Integrase catalytic domain-containing protein n=1 ... [more]
A0A8H6GDH3_FUSOX3.510e-2929.18Uncharacterized protein n=1 Tax=Fusarium oxysporum... [more]
A0A6H5KJP2_9PHAE8.770e-2928.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE1.020e-2833.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBK7_9PHAE1.080e-2835.32CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L6V8_9PHAE3.250e-2727.10Integrase catalytic domain-containing protein n=1 ... [more]
F2U4Z5_SALR51.700e-2630.86Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182169contigH-elongata_contig182169:10..884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue5.9e-17
Seed eggNOG ortholog67593.Physo133508
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size875
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182169.4882.1prot_H-elongata_contig182169.4882.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182169 271..807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930048.734137-UTR-H-elongata_contig182169:9..2701622930048.734137-UTR-H-elongata_contig182169:9..270Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig182169 10..270 +
1691679260.8892214-UTR-H-elongata_contig182169:9..2701691679260.8892214-UTR-H-elongata_contig182169:9..270Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig182169 10..270 +
1622930048.7748854-UTR-H-elongata_contig182169:807..8841622930048.7748854-UTR-H-elongata_contig182169:807..884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig182169 808..884 +
1691679260.910479-UTR-H-elongata_contig182169:807..8841691679260.910479-UTR-H-elongata_contig182169:807..884Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig182169 808..884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930048.7521505-CDS-H-elongata_contig182169:270..8071622930048.7521505-CDS-H-elongata_contig182169:270..807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182169 271..807 +
1691679260.9031227-CDS-H-elongata_contig182169:270..8071691679260.9031227-CDS-H-elongata_contig182169:270..807Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182169 271..807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182169.4882.1

>prot_H-elongata_contig182169.4882.1 ID=prot_H-elongata_contig182169.4882.1|Name=mRNA_H-elongata_contig182169.4882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
MVFVDDLLVASATKRDEEQAVRDLCSCFPIKDLGEALYYLGCHITRDLGI
IYGGEPGGGTKLSALVDADFGTCPDTCRSVSGGAVMMAGGAISWFSRVQK
VTAAASSESEYPALAEMVNELRFLRQVGEFMTLPIDVAIKIHEDNEGAIK
MAKHRFSSRRTRHVNIKHHIVRDAIEGG*
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mRNA from alignment at H-elongata_contig182169:10..884+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182169.4882.1 ID=mRNA_H-elongata_contig182169.4882.1|Name=mRNA_H-elongata_contig182169.4882.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=875bp|location=Sequence derived from alignment at H-elongata_contig182169:10..884+ (Himanthalia elongata Himel1 dioecious)
GAGGCGCGGCAGCTGGACCTCGACATGGCCTACCTGGAGGCCAATGTAGA GGAGGAGATCTACGTTGAGCTCCCGGAGGCATACCGTGACTCCAGGAAGC AAGTCGGCCTACTAAAGAAGGCAATGTACGGGCTCGTTCACGCCGGGCTG CTGTGATCAAAAACGTTCGGGATCGAGCTCGAGGCGAAGGGTTTCCAGAG ATCTCAAGCCGACCCATGCGTGTTCCGGCGGATTCTCCACGGATTAGTGG TAGTCGTCATTATGGTCTTCGTCGACGACCTGCTGGTTGCTAGTGCGACG AAACGTGACGAGGAGCAAGCGGTGAGGGACCTGTGCTCCTGTTTCCCCAT TAAGGATCTGGGGGAGGCTTTGTATTACCTGGGATGCCACATCACTCGGG ACCTCGGGATCATCTACGGAGGGGAACCGGGGGGAGGGACCAAGTTATCA GCGTTGGTCGACGCAGACTTCGGCACCTGCCCGGACACGTGTCGCTCAGT GTCGGGAGGGGCGGTGATGATGGCTGGCGGGGCCATTAGTTGGTTCTCAC GAGTGCAAAAGGTAACGGCGGCGGCGTCGTCCGAATCAGAATACCCCGCG CTGGCTGAAATGGTAAACGAGTTGCGTTTCCTACGACAGGTCGGGGAGTT CATGACCCTCCCAATCGACGTCGCCATCAAGATACACGAGGACAACGAAG GCGCAATCAAGATGGCGAAACACCGCTTCAGCAGTCGACGAACGAGGCAC GTGAACATCAAGCATCACATTGTGCGCGACGCGATCGAGGGGGGGTGATT CAAGTAGAATACGTTCGGTCCGGGGAACAGCACGCCGACATCCTCACGAA GTCGGGAGACATCAATACATTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig182169:10..884+

>mRNA_H-elongata_contig182169.4882.1 ID=mRNA_H-elongata_contig182169.4882.1|Name=mRNA_H-elongata_contig182169.4882.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig182169:10..884+ (Himanthalia elongata Himel1 dioecious)
ATGGTCTTCGTCGACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGA
GGAGCAAGCGGTGAGGGACCTGTGCTCCTGTTTCCCCATTAAGGATCTGG
GGGAGGCTTTGTATTACCTGGGATGCCACATCACTCGGGACCTCGGGATC
ATCTACGGAGGGGAACCGGGGGGAGGGACCAAGTTATCAGCGTTGGTCGA
CGCAGACTTCGGCACCTGCCCGGACACGTGTCGCTCAGTGTCGGGAGGGG
CGGTGATGATGGCTGGCGGGGCCATTAGTTGGTTCTCACGAGTGCAAAAG
GTAACGGCGGCGGCGTCGTCCGAATCAGAATACCCCGCGCTGGCTGAAAT
GGTAAACGAGTTGCGTTTCCTACGACAGGTCGGGGAGTTCATGACCCTCC
CAATCGACGTCGCCATCAAGATACACGAGGACAACGAAGGCGCAATCAAG
ATGGCGAAACACCGCTTCAGCAGTCGACGAACGAGGCACGTGAACATCAA
GCATCACATTGTGCGCGACGCGATCGAGGGGGGGTGAATGGTCTTCGTCG
ACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCGGTG
AGGGACCTGTGCTCCTGTTTCCCCATTAAGGATCTGGGGGAGGCTTTGTA
TTACCTGGGATGCCACATCACTCGGGACCTCGGGATCATCTACGGAGGGG
AACCGGGGGGAGGGACCAAGTTATCAGCGTTGGTCGACGCAGACTTCGGC
ACCTGCCCGGACACGTGTCGCTCAGTGTCGGGAGGGGCGGTGATGATGGC
TGGCGGGGCCATTAGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGG
CGTCGTCCGAATCAGAATACCCCGCGCTGGCTGAAATGGTAAACGAGTTG
CGTTTCCTACGACAGGTCGGGGAGTTCATGACCCTCCCAATCGACGTCGC
CATCAAGATACACGAGGACAACGAAGGCGCAATCAAGATGGCGAAACACC
GCTTCAGCAGTCGACGAACGAGGCACGTGAACATCAAGCATCACATTGTG
CGCGACGCGATCGAGGGGGGGTGA
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