mRNA_H-elongata_contig182161.4881.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig182161.4881.1
Unique NamemRNA_H-elongata_contig182161.4881.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig182161.4881.1 vs. uniprot
Match: D7FHR8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHR8_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 2.470e-24
Identity = 50/68 (73.53%), Postives = 60/68 (88.24%), Query Frame = 1
Query:    1 FWTKVAGGKRFAKRATIWDAMFVSYGFF-RRDEGIAAIVAKVAFRFVLNLTIGLFMAVIQFLFSVWQV 201
            FW KV+GGK+FAKRAT+WDAMFV  G   RRDEG+A+IVA++AFRFV+NLT+GLFMAV QFLFS+W V
Sbjct:  153 FWRKVSGGKQFAKRATMWDAMFVGIGTMTRRDEGLASIVARIAFRFVVNLTMGLFMAVFQFLFSMWTV 220          
BLAST of mRNA_H-elongata_contig182161.4881.1 vs. uniprot
Match: A0A0L0GCK1_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0GCK1_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 1.220e-10
Identity = 30/65 (46.15%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 FWTKVAGGKRFAKRATIWDAMFVSYGFFRRDEGIAAIVAKVAFRFVLNLTIGLFMAVIQFLFSVW 195
            FW K + G+RFAKR T+WDAMF+  G   RDE + + + +V    +LN TIGL  A+I F + +W
Sbjct:  132 FWGKFSSGQRFAKRQTMWDAMFMGIGAMTRDETMGSYILRVVMNMILNFTIGLIGALIGFWWGLW 196          
BLAST of mRNA_H-elongata_contig182161.4881.1 vs. uniprot
Match: A0A835Z0D4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D4_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.200e-10
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1
Query:    1 FWTKVAGGKRFAKRATIWDAMFVSYGFFRRDEGIAAIVAKVAFRFVLNLTIGLFMAVIQFLFSVWQV 201
            FW +VAGG+ FA+R+T++DA+F   G  RRD  +A  V  +A + + N++IG   A++ FL+SVW V
Sbjct:  153 FWRRVAGGREFARRSTLYDAIFAGIGSMRRDSSMAEYVMTMAVQVLWNMSIGAVGALVTFLWSVWGV 219          
BLAST of mRNA_H-elongata_contig182161.4881.1 vs. uniprot
Match: L1JT84_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JT84_GUITC)

HSP 1 Score: 60.1 bits (144), Expect = 5.780e-9
Identity = 27/67 (40.30%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 FWTKVAGGKRFAKRATIWDAMFVSYGFFRRDEGIAAIVAKVAFRFVLNLTIGLFMAVIQFLFSVWQV 201
            FW   A GK FAKRA++WD +F+  G   RDEG+A+ + +   + + N T+GL  A++ F++ +W V
Sbjct:  159 FWGTFAQGKGFAKRASMWDLLFMGLGSMGRDEGLASFILRFVIQVLFNFTLGLVGALLAFIWYLWDV 225          
BLAST of mRNA_H-elongata_contig182161.4881.1 vs. uniprot
Match: A0A7S2A693_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A693_TRICV)

HSP 1 Score: 59.7 bits (143), Expect = 6.540e-9
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 FWTKVAGGKRFAKRATIWDAMFVSYGFFRRDEGIAAIVAKVAFRFVLNLTIGLFMAVIQFLFSVWQV 201
            FW +   GKRFAKR ++WDAMF+      RDE  A    K+  + ++N +IGL MA+  F+F +W +
Sbjct:  150 FWERFHAGKRFAKRQSMWDAMFMGMRSMGRDESFAEYALKMIVQVLINFSIGLVMALFIFIFGLWGI 216          
BLAST of mRNA_H-elongata_contig182161.4881.1 vs. uniprot
Match: A0A6U0UXC3_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UXC3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 6.720e-9
Identity = 32/64 (50.00%), Postives = 39/64 (60.94%), Query Frame = 1
Query:    1 FWTKVAGGKRFAKRATIWDAMFVSYGF-FRRDEGIAAIVAKVAFRFVLNLTIGLFMAVIQFLFS 189
            FW   AGGKRFAKRAT WD +F+  G    RDE +   + +V      NLT+GL  A+I FLFS
Sbjct:  147 FWGAFAGGKRFAKRATYWDVIFMGVGMAMGRDESLPEFLLRVXXXXXXNLTVGLIFALITFLFS 210          
BLAST of mRNA_H-elongata_contig182161.4881.1 vs. uniprot
Match: K0SR39_THAOC (Palmitoyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SR39_THAOC)

HSP 1 Score: 59.7 bits (143), Expect = 8.470e-9
Identity = 26/67 (38.81%), Postives = 43/67 (64.18%), Query Frame = 1
Query:    1 FWTKVAGGKRFAKRATIWDAMFVSYGFFRRDEGIAAIVAKVAFRFVLNLTIGLFMAVIQFLFSVWQV 201
            FW   A GKRFAKR + WDA+F+ +    RDE  +  V ++  + ++N ++GL MA++ F+F +W +
Sbjct:  698 FWEYFASGKRFAKRQSWWDAIFIGFRSMGRDEHFSEYVLRMLMQVLINFSMGLLMALVIFIFGLWNI 764          
BLAST of mRNA_H-elongata_contig182161.4881.1 vs. uniprot
Match: A0A1E7FAB6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAB6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.320e-8
Identity = 27/67 (40.30%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    1 FWTKVAGGKRFAKRATIWDAMFVSYGFFRRDEGIAAIVAKVAFRFVLNLTIGLFMAVIQFLFSVWQV 201
            FW+  + GK+FAKR ++WDAMF+      RDE +     KV  + +LN +IGL MA++ F+  +W +
Sbjct:  160 FWSYFSAGKKFAKRQSMWDAMFMGIRSMGRDENMVEYGMKVLMQVLLNFSIGLVMALVMFVVGLWSI 226          
BLAST of mRNA_H-elongata_contig182161.4881.1 vs. uniprot
Match: A0A7S0C9V1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C9V1_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.510e-8
Identity = 27/67 (40.30%), Postives = 39/67 (58.21%), Query Frame = 1
Query:    1 FWTKVAGGKRFAKRATIWDAMFVSYGFFRRDEGIAAIVAKVAFRFVLNLTIGLFMAVIQFLFSVWQV 201
            FW     GK+FAKR T+WDA+F       RDE +   V KV    ++N ++GL MA+  F+F +W +
Sbjct:  162 FWEYFQSGKQFAKRQTMWDALFTGMRSMGRDESMMEYVLKVLMNALINFSLGLIMALFIFIFGLWSI 228          
BLAST of mRNA_H-elongata_contig182161.4881.1 vs. uniprot
Match: A0A7S4T559_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T559_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.370e-8
Identity = 25/67 (37.31%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    1 FWTKVAGGKRFAKRATIWDAMFVSYGFFRRDEGIAAIVAKVAFRFVLNLTIGLFMAVIQFLFSVWQV 201
            FW     GK FAKR ++WDAMF+      RDE +   + K+  + ++N ++GL MA++ F+F +W +
Sbjct:  154 FWEYFYAGKNFAKRQSMWDAMFMGMRSMSRDESMVEYMLKMLIQVLINFSLGLLMALVIFIFGLWSI 220          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig182161.4881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FHR8_ECTSI2.470e-2473.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0L0GCK1_9EUKA1.220e-1046.15Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A835Z0D4_9STRA5.200e-1044.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L1JT84_GUITC5.780e-940.30Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S2A693_TRICV6.540e-941.79Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A6U0UXC3_9STRA6.720e-950.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
K0SR39_THAOC8.470e-938.81Palmitoyltransferase n=1 Tax=Thalassiosira oceanic... [more]
A0A1E7FAB6_9STRA1.320e-840.30Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S0C9V1_9STRA2.510e-840.30Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4T559_9STRA3.370e-837.31Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig182161contigH-elongata_contig182161:332..532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue4e-19
Seed eggNOG ortholog2880.D7FHR8
EggNOG OGs28IGU@1,2QQTP@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-07_006530.1
Exons1
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930048.6823714-CDS-H-elongata_contig182161:331..5321622930048.6823714-CDS-H-elongata_contig182161:331..532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182161 332..532 +
1691679260.8754728-CDS-H-elongata_contig182161:331..5321691679260.8754728-CDS-H-elongata_contig182161:331..532Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig182161 332..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig182161.4881.1prot_H-elongata_contig182161.4881.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig182161 332..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig182161.4881.1

>prot_H-elongata_contig182161.4881.1 ID=prot_H-elongata_contig182161.4881.1|Name=mRNA_H-elongata_contig182161.4881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
FWTKVAGGKRFAKRATIWDAMFVSYGFFRRDEGIAAIVAKVAFRFVLNLT
IGLFMAVIQFLFSVWQV
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mRNA from alignment at H-elongata_contig182161:332..532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig182161.4881.1 ID=mRNA_H-elongata_contig182161.4881.1|Name=mRNA_H-elongata_contig182161.4881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=201bp|location=Sequence derived from alignment at H-elongata_contig182161:332..532+ (Himanthalia elongata Himel1 dioecious)
TTCTGGACGAAGGTGGCTGGTGGGAAGCGGTTTGCCAAAAGAGCGACCAT ATGGGACGCGATGTTCGTCTCCTACGGCTTCTTCCGTCGAGATGAAGGTA TCGCGGCGATCGTGGCCAAGGTGGCCTTCCGGTTCGTGCTGAATCTTACC ATTGGGCTCTTCATGGCGGTCATCCAATTCCTCTTTTCAGTCTGGCAGGT G
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Coding sequence (CDS) from alignment at H-elongata_contig182161:332..532+

>mRNA_H-elongata_contig182161.4881.1 ID=mRNA_H-elongata_contig182161.4881.1|Name=mRNA_H-elongata_contig182161.4881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig182161:332..532+ (Himanthalia elongata Himel1 dioecious)
TTCTGGACGAAGGTGGCTGGTGGGAAGCGGTTTGCCAAAAGAGCGACCAT
ATGGGACGCGATGTTCGTCTCCTACGGCTTCTTCCGTCGAGATGAAGGTA
TCGCGGCGATCGTGGCCAAGGTGGCCTTCCGGTTCGTGCTGAATCTTACC
ATTGGGCTCTTCATGGCGGTCATCCAATTCCTCTTTTCAGTCTGGCAGGT
GTTCTGGACGAAGGTGGCTGGTGGGAAGCGGTTTGCCAAAAGAGCGACCA
TATGGGACGCGATGTTCGTCTCCTACGGCTTCTTCCGTCGAGATGAAGGT
ATCGCGGCGATCGTGGCCAAGGTGGCCTTCCGGTTCGTGCTGAATCTTAC
CATTGGGCTCTTCATGGCGGTCATCCAATTCCTCTTTTCAGTCTGGCAGG
TG
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