prot_H-elongata_contig18198.4878.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18198.4878.1
Unique Nameprot_H-elongata_contig18198.4878.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length467
Homology
BLAST of mRNA_H-elongata_contig18198.4878.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 1.060e-90
Identity = 163/421 (38.72%), Postives = 251/421 (59.62%), Query Frame = 0
Query:   76 EKYSPTPSTASIRMLLATVAAKDGELRHFDAEQAFLTAEIDGELYIEIPKEYRKFPGAVGRLSKAIYGLVQAGRCWNNKFCSDMVAIGFEQGKADPCVFRKVVDGEAEVVVVVHVDDILALAKDKATMDRFAAELGQKFKLKGMGDRQ--------------------------------VLHGLKIPATSGVPTLSKADESRNPEEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKPGPAHKRAAMKFMQYLLHTKDWGITYG-GQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMPAKGKISWYSRMQEVTASGTSEAEYVALSEAVKEVLFLRQVQKFMEPSVRVGAVNVFEDNEGAIKLATNRHASRRTKHIDVKHHTVRDASDAQKVRVVYVRSEDQHGDLLTKPL 463
            E Y+PT + +S+R+L A    ++  LRHFD +QAF+ +++D ++++ +P+   +  G + +L+K++YGL QA R W++     ++ +GF Q  AD CVFR + +G   V +VVHVDDI ++ +++   D+F  +L     +K +GD +                                V +G +IP   G+  LS+ D+       EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C  P   H RA +  + Y++ T D GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW+SR Q+     T+EAEYV+L++ +KEVLFLRQV +FM P   +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+    +++ + +V S  QH D LTK L
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 422          
BLAST of mRNA_H-elongata_contig18198.4878.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 5.690e-90
Identity = 181/483 (37.47%), Postives = 269/483 (55.69%), Query Frame = 0
Query:    9 WRKAEKIEMRGMVDNCVYKQVAR-PKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATVAAKDGELRHFDAEQAFLTAEIDGELYIEIPKEYRKFPGAVGRLSKAIYGLVQAGRCWNNKFCSDMVAIGFEQGKADPCVFRKVVDGEAEVVVVVHVDDILALAKDKATMDRFAAELGQKFKLKGMGD--------------------------RQVLHGLKIPATSGVPTLSKADESRNPEEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKPGPAHKRAAMKFMQYLLHTKDWGITYGGQGC-GLYMEAYTDSDFGACLDTRRSVSGAVLMPAKGKISWYSRMQEVTASGTSEAEYVALSEAVKEVLFLRQVQKFMEPSVRVGAVNVFEDNEGAIKLATNRHASRRTKHIDVKHHTVRDASDAQKVRVVYVRSEDQHGDLLTKPL 463
            W KA   E+ G++    +   A+ P+   V+  + ++K K  + GK+ K K RLVA+GF Q  GV Y E +SPT + ASIR+++A     + EL H D EQAF  +++D E+ +++P       G + RL+K++YGL QA R +  +  SD++ IGFEQ  +DPCV R ++  E   ++ +HVDDIL  A  K   +     LG     K +G+                          R VL    I  TS +P  S A++SR+  E EE    P+RE VG LMW A  TRP+ ++AVR VAR   +P  +  +AA K + YL  T    + Y       +    Y D+DF +    RRSVSGA+++ A   +SW+S  Q+  +  TSEAEY+A+ + VKE LF+  + + + PS +   ++VFEDNEGAI LA N  +S R+KHIDV+HH +R+ ++   + V +V S++QH D+LTK L
Sbjct:  228 WDKAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDIL-YAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 708          
BLAST of mRNA_H-elongata_contig18198.4878.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 294 bits (752), Expect = 1.040e-89
Identity = 178/503 (35.39%), Postives = 282/503 (56.06%), Query Frame = 0
Query:    7 NDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATVAAKDGELRHFDAEQAFLTAEIDGELYIEIPKEYRKF---------PGAVGRLSKAIYGLVQAGRCWNNKFCSDMVAIGFEQGKADPCVFRKVVDGEAEVVVVVHVDDILALAKDKATMDRFAAELGQKFKLKGMGDRQVLHGLKI----------------------------------PATSGVPTLSKADESRNPEEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKPGPAHKRAAMKFMQYLLHTKDWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMPAKGKISWYSRMQEVTASGTSEAEYVALSEAVKEVLFLRQVQKFMEPSVRVGAVNVFEDNEGAIKLATNRHASRRTKHIDVKHHTVRDASDAQKVRVVYVRSEDQHGDLLTKPLDTQ 466
            ++W+KA   E++ ++ N  +K V +P  +  +G + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E YSP     S+R +LA   A+  E+   D + AFL  E++ E+Y+E+P+  R+             V  L +++YGL QA R WN      + + GFE   ADPCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K +G  + + G++I                                  P   GV  L+KADE +  E+K +M+  PYR  VG+LM+ A  TRPDI+ AV  ++RF E PG  H  A +K ++YLL TKD GI Y G   G   EAY+D+D+    D RRSVSG +LM     + W S  Q+  A  ++EAEY+ALS+ VKE +++R++ K +    +VGA  ++EDN+GA+ LA N     RTKHID+++H +R+   + +V + YV +++Q    +TK L ++
Sbjct:   79 DEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLAYFMTKGLSSK 577          
BLAST of mRNA_H-elongata_contig18198.4878.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 3.050e-89
Identity = 182/483 (37.68%), Postives = 271/483 (56.11%), Query Frame = 0
Query:    9 WRKAEKIEMRGMVDNCVYKQVAR-PKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATVAAKDGELRHFDAEQAFLTAEIDGELYIEIPKEYRKFPGAVGRLSKAIYGLVQAGRCWNNKFCSDMVAIGFEQGKADPCVFRKVVDGEAEVVVVVHVDDILALAKDKATMDRFAAELGQKFKLKGMGD--------------------------RQVLHGLKIPATSGVPTLSKADESRNPEEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKPGPAHKRAAMKFMQYLLHTKDWGITYG-GQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMPAKGKISWYSRMQEVTASGTSEAEYVALSEAVKEVLFLRQVQKFMEPSVRVGAVNVFEDNEGAIKLATNRHASRRTKHIDVKHHTVRDASDAQKVRVVYVRSEDQHGDLLTKPL 463
            W  A   E+ G++    +   A+ P    V+  + ++K K  + GK+ K K RLVA+GF Q  GV Y E +SPT + AS R+++A     + EL H+D EQAF+ +E+D E+++++P       G V RL+K++YGL QA R +  +  S++  IGFEQ  +DPCV R ++  E   +V +HVDDIL  A  K+  +   A LG     K +G+                          R VL    +  TS +P  S  ++ R+  E E     P+RE VG+LMW A  TRPDI++AVRAVAR   +P  +H +AA K + YLL T    + +            Y D+DF +  + RRSVSGA+++ A   + W S+ Q+  +  TSEAEY+A+ + VKE LF+  + +F+ PS +   ++V EDNEGAI LA N  +S R+KHIDV+HH +R+ ++   + V +V SE+QH D+LTK L
Sbjct:  463 WEGAMSAEVEGLIRAGTFTLAAKVPISCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 943          
BLAST of mRNA_H-elongata_contig18198.4878.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 300 bits (768), Expect = 4.860e-89
Identity = 180/503 (35.79%), Postives = 288/503 (57.26%), Query Frame = 0
Query:    7 NDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATVAAKDGELRHFDAEQAFLTAEIDGELYIEIPKEYRKF---------PGAVGRLSKAIYGLVQAGRCWNNKFCSDMVAIGFEQGKADPCVFRKVVDGEAEVVVVVHVDDILALAKDKATMDRFAAELGQKFKLKGMGDRQVLHGLKI----------------------------------PATSGVPTLSKADESRNPEEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKPGPAHKRAAMKFMQYLLHTKDWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMPAKGKISWYSRMQEVTASGTSEAEYVALSEAVKEVLFLRQVQKFMEPSVRVGAVNVFEDNEGAIKLATNRHASRRTKHIDVKHHTVRDASDAQKVRVVYVRSEDQHGDLLTKPLDTQ 466
            ++W+KA   E+  ++ N  +K V +P  +  +G + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E YSP     SIR +L   +A+  E+   D + AFL  +++ E+Y+E+P+E R+             V  L +++YGL QA R WN     ++ ++GFE   ADPCV+ +  +GE E +V ++VDD+L  ++  A +    A + +KF++K MG  + + G++I                                  P   GV  L+KADE +  E+K +M+  PYR  VG+LM+ A  TRPDI+ AV  ++RF E PG  H  A +K ++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LM  +  + W S  Q+  A  ++EAEY+ALS+ VKE +++R++ K +    +VGA  ++EDN+GA+ LA N     RTKHID+++H VR+ + + +V++ YV +++Q  D +TK L ++
Sbjct:  410 DEWKKAIASELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKECVWMRRLLKDIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFVREKAVSNEVKLEYVDTKNQLADFMTKGLSSK 908          
BLAST of mRNA_H-elongata_contig18198.4878.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 291 bits (746), Expect = 1.210e-88
Identity = 163/421 (38.72%), Postives = 251/421 (59.62%), Query Frame = 0
Query:   76 EKYSPTPSTASIRMLLATVAAKDGELRHFDAEQAFLTAEIDGELYIEIPKEYRKFPGAVGRLSKAIYGLVQAGRCWNNKFCSDMVAIGFEQGKADPCVFRKVVDGEAEVVVVVHVDDILALAKDKATMDRFAAELGQKFKLKGMGDRQ--------------------------------VLHGLKIPATSGVPTLSKADESRNPEEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKPGPAHKRAAMKFMQYLLHTKDWGITYG-GQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMPAKGKISWYSRMQEVTASGTSEAEYVALSEAVKEVLFLRQVQKFMEPSVRVGAVNVFEDNEGAIKLATNRHASRRTKHIDVKHHTVRDASDAQKVRVVYVRSEDQHGDLLTKPL 463
            E Y+PT + +S+R+L A    ++  LRHFD +QAF+ +++D ++++ +P+   +  G + +L+K++YGL QA R W++     ++ +GF Q  AD CVFR + +G   V +VVHVDDI ++ +++   D+F  +L     +K +GD +                                V +G +IP   G+  LS+ D+       EE+  +P+RE +G+LMW AT TRPDIA+AVRAVAR+C  P   H RA +  + Y++ T D GIT+  G   GL ME + D+D+ +    RRSVSG ++M   G ISW+SR Q+     T+EAEYV+L++ +KEVLFLRQV +FM P   +  + VFEDN+GAI+LA N  ++  +KHIDV+HH +R+    +++ + +V S  QH D LTK L
Sbjct:  184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDDIFSIGEEERC-DQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQD------EEVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKAL 596          
BLAST of mRNA_H-elongata_contig18198.4878.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA)

HSP 1 Score: 292 bits (747), Expect = 2.800e-88
Identity = 177/503 (35.19%), Postives = 285/503 (56.66%), Query Frame = 0
Query:    7 NDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATVAAKDGELRHFDAEQAFLTAEIDGELYIEIPKEYRKF---------PGAVGRLSKAIYGLVQAGRCWNNKFCSDMVAIGFEQGKADPCVFRKVVDGEAEVVVVVHVDDILALAKDKATMDRFAAELGQKFKLKGMGDRQVLHGLKI----------------------------------PATSGVPTLSKADESRNPEEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKPGPAHKRAAMKFMQYLLHTKDWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMPAKGKISWYSRMQEVTASGTSEAEYVALSEAVKEVLFLRQVQKFMEPSVRVGAVNVFEDNEGAIKLATNRHASRRTKHIDVKHHTVRDASDAQKVRVVYVRSEDQHGDLLTKPLDTQ 466
            ++W+KA   E++ ++ N  +K V +P  +  +G + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E YSP     SIR +LA  +A+  E+   D + AFL  +++ E+Y+E+ +  R+             V  L +++YGL QA R WN      + ++GFE    DPCV+ +  +GE E +V ++VDD+L  ++ KA +    A + +KF++K MG  + + G++I                                  P   GV  L+KADE +  E+K +M+  PYR  VG+LM+ +  TRPDI+ AV  ++RF E PG  H  A +K ++YLL TKD GI Y G   G  +EAY+D+D+    D RRSVSG +LM     + W S  Q+  A  ++EAEY+ALS+ VKE +++R++ K +    +VGA  ++EDN+GA+ LA N      TKHID+++H +RD + + +V++ YV +++Q  D +TK L ++
Sbjct:  144 DEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLMLCGAPVVWRSSFQKTVALSSTEAEYMALSDCVKECVWMRRLIKDIGAE-QVGATVIYEDNQGAMALAKNVGYQAGTKHIDIRYHFIRDKAVSNEVKLEYVDTKNQLADFMTKGLSSK 642          
BLAST of mRNA_H-elongata_contig18198.4878.1 vs. uniprot
Match: A0A6H5KN43_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN43_9PHAE)

HSP 1 Score: 291 bits (744), Expect = 8.120e-88
Identity = 173/444 (38.96%), Postives = 249/444 (56.08%), Query Frame = 0
Query:   47 KVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATVAAKDGELRHFDAEQAFLTAEIDGELYIEIPKEYRKFPGAVGRLSKAIYGLVQAGRCWNNKFCSDMVAIGFEQGKADPCVFRKVVDGEAEVVVVVHVDDILALAKDKATMDRFAAELGQKFKLKGMGD--------------------------RQVLHGLKIPATSGVPTLSKADESRNPEEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKPGPAHKRAAMKFMQYLLHTKDWGITYGGQGC-GLYMEAYTDSDFGACLDTRRSVSGAVLMPAKGKISWYSRMQEVTASGTSEAEYVALSEAVKEVLFLRQVQKFMEPSVRVGAVNVFEDNEGAIKLATNRHASRRTKHIDVKHHTVRDASDAQKVRVVYVRSEDQHGDLLTKPL 463
            +V   GK+ K K RLVA+GF Q  GV Y E +SPT + ASIR+L+A     D E  HFD EQAF+ +E+D E+++++P       G V RL K++YGL QA R ++ +  SD+  IGFEQ  +DPCV   ++  E   ++ +HVDDIL    ++   +     LG     K +G+                          R VL    +  TS +P  S  ++ R+  E E     P+R+ VG+LMW A  TRPDI++AVRAVAR   +P  +H +AA K + YLL T    + Y       +    Y D+DF +    RRS SGA+++ A   ++W SR Q+     T+EAEYVA+ + VKE LF++ + +F+ PS R+G + V EDNEGAI LA N  +S  +KHIDV+HH  R+ ++   + + +V SE QH D+LTK L
Sbjct:  203 RVSSKGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLLVALACKYDLEFLHFDIEQAFVQSELDHEVFMKLPPGCESMTGKVVRLDKSLYGLRQASRTFHKRLVSDLKRIGFEQSLSDPCVLHFMMGDEVLGMIAIHVDDILYAGIERLA-EMVVEALGDSLPTKNLGEVRFFLGCAFARDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-SLTNDYRSVIEDEGAGDVPFRDVVGSLMWIANQTRPDISNAVRAVARHSHEPNKSHWKAAQKILNYLLETAHLTLKYKQDTMVDVGTLVYVDADFASEATDRRSDSGALVLVADCLVAWISRTQKCVTLSTTEAEYVAMGDGVKEALFVKGMLEFLRPSDRIGKIQVREDNEGAIALAENPLSSCNSKHIDVRHHLFRNLTEEGVLEIRHVSSEGQHADILTKAL 644          
BLAST of mRNA_H-elongata_contig18198.4878.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 1.530e-87
Identity = 182/483 (37.68%), Postives = 271/483 (56.11%), Query Frame = 0
Query:    9 WRKAEKIEMRGMVDNCVYKQVAR-PKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATVAAKDGELRHFDAEQAFLTAEIDGELYIEIPKEYRKFPGAVGRLSKAIYGLVQAGRCWNNKFCSDMVAIGFEQGKADPCVFRKVVDGEAEVVVVVHVDDILALAKDKATMDRFAAELGQKFKLKGMGD--------------------------RQVLHGLKIPATSGVPTLSKADESRNPEEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKPGPAHKRAAMKFMQYLLHTKDWGITYG-GQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMPAKGKISWYSRMQEVTASGTSEAEYVALSEAVKEVLFLRQVQKFMEPSVRVGAVNVFEDNEGAIKLATNRHASRRTKHIDVKHHTVRDASDAQKVRVVYVRSEDQHGDLLTKPL 463
            W  A   E+ G++    +   A+ P    V+  + ++K K  + GK+ K K RLVA+GF Q  GV Y E +SPT + AS R+++A     + EL H+D EQAF+ +E+D E+++++P       G V RL+K++YGL QA R +  +  S++  IGFEQ  +DPCV R ++  E   +V +HVDDIL  A  K+  +   A LG     K +G+                          R VL    +  TS +P  S  ++ R+  E E     P+RE VG+LMW A  TRPDI++AVRAVAR   +P  +H +AA K + YLL T    + +            Y D+DF +  + RRSVSGA+++ A   + W S+ Q+  +  TSEAEY+A+ + VKE LF+  + +F+ PS +   ++V EDNEGAI LA N  +S R+KHIDV+HH +R+ ++   + V +V SE+QH D+LTK L
Sbjct:  730 WEGAMSAEVEGLIRAGTFTLAAKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDIL-YAGTKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPA-SPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 1210          
BLAST of mRNA_H-elongata_contig18198.4878.1 vs. uniprot
Match: A0A6H5KPV1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV1_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 9.180e-87
Identity = 180/483 (37.27%), Postives = 261/483 (54.04%), Query Frame = 0
Query:    9 WRKAEKIEMRGMVDNCVYKQVAR-PKDKLVVGTKMLYKRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATVAAKDGELRHFDAEQAFLTAEIDGELYIEIPKEYRKFPGAVGRLSKAIYGLVQAGRCWNNKFCSDMVAIGFEQGKADPCVFRKVVDGEAEVVVVVHVDDILALAKDKATMDRFAAELGQKFKLKGMGD--------------------------RQVLHGLKIPATSGVPTLSKADESRNPEEKEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKPGPAHKRAAMKFMQYLLHTKDWGITYG-GQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMPAKGKISWYSRMQEVTASGTSEAEYVALSEAVKEVLFLRQVQKFMEPSVRVGAVNVFEDNEGAIKLATNRHASRRTKHIDVKHHTVRDASDAQKVRVVYVRSEDQHGDLLTKPL 463
            W  A   E  G+V    +    + P    V+  + ++K K  + GK+ K K RLVA+GF Q  G+ Y   +SPT + ASIR+L+A     + EL H D EQAF+  ++D  +++++P       G V RL+K++YGL QA R +  +  SD+  IGFEQ  +DPCV R ++  E   +V +HVDDIL  A  K+  +   A LG     K +G+                          R VL    +  TS +P  S    +R+  E EE    P+RE VG  MW A+ TRPDI++ VRAVAR   +P  +H +AA K + YLL T    + +       +    Y D+DF +    RRSVSGA++  A   + W SR Q+  A  TSEAEY+A+ + VKE LF   + +F+ PS +   + V EDNEGAI LA N  +S R KHIDV+HH +R  ++  ++++ +V S++QH D+LTK L
Sbjct:  182 WDVAMSAEFEGLVRAGTFSLAVKVPIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGIDYLLTFSPTANAASIRLLVALACKYNLELLHLDIEQAFVQTKLDHAVFMKLPPGCGTMSGKVVRLNKSLYGLKQASRTFYMRLVSDLKRIGFEQSLSDPCVLRFMMGDEVMGMVAIHVDDIL-YAGSKSLAETVVAALGDSLPTKNLGEVKFFLGCAFRRDREAGTIEISQESYIRSVLERFNVVRTSSIPA-SPTVVNRSVMENEEAGDVPFREVVGCAMWIASQTRPDISNVVRAVARHSHEPKLSHWKAAQKILNYLLGTAHLSLNFKRDSSVDVGTLVYVDADFASKATDRRSVSGALVFVAGMLVVWTSRTQKCVAQSTSEAEYLAMGDGVKEALFEDGMLQFLRPSEKSREIKVLEDNEGAIALADNPLSSGRRKHIDVRHHFLRSLTEEGRIKISHVSSKEQHADILTKAL 662          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18198.4878.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE1.060e-9038.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE5.690e-9037.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3Q908_9STRA1.040e-8935.39Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KKK1_9PHAE3.050e-8937.68Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A3YGI7_9STRA4.860e-8935.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KQB8_9PHAE1.210e-8838.72Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3DSS8_9STRA2.800e-8835.19Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KN43_9PHAE8.120e-8838.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRL9_9PHAE1.530e-8737.68Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KPV1_9PHAE9.180e-8737.27Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 25..243
e-value: 6.3E-44
score: 150.4
NoneNo IPR availablePANTHERPTHR45895FAMILY NOT NAMEDcoord: 3..465
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 32..431

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18198contigH-elongata_contig18198:72..1569 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18198.4878.1mRNA_H-elongata_contig18198.4878.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18198 48..1569 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18198.4878.1 ID=prot_H-elongata_contig18198.4878.1|Name=mRNA_H-elongata_contig18198.4878.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=467bp
MESPEWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYKRKVGQ
DGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASIRMLLATVAAKDGE
LRHFDAEQAFLTAEIDGELYIEIPKEYRKFPGAVGRLSKAIYGLVQAGRC
WNNKFCSDMVAIGFEQGKADPCVFRKVVDGEAEVVVVVHVDDILALAKDK
ATMDRFAAELGQKFKLKGMGDRQVLHGLKIPATSGVPTLSKADESRNPEE
KEEMRKFPYREAVGALMWTATMTRPDIASAVRAVARFCEKPGPAHKRAAM
KFMQYLLHTKDWGITYGGQGCGLYMEAYTDSDFGACLDTRRSVSGAVLMP
AKGKISWYSRMQEVTASGTSEAEYVALSEAVKEVLFLRQVQKFMEPSVRV
GAVNVFEDNEGAIKLATNRHASRRTKHIDVKHHTVRDASDAQKVRVVYVR
SEDQHGDLLTKPLDTQR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2