mRNA_H-elongata_contig181939.4876.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181939.4876.1
Unique NamemRNA_H-elongata_contig181939.4876.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig181939.4876.1 vs. uniprot
Match: A0A6H5JA47_9PHAE (Aspartokinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA47_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.250e-32
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1 
Query:    1 RSKDRLVSYGERLSVRMMAATLNKVGVPAQHFDAWALGMRTNSEFGNAEVLDETYPLIRESLSKFDPSM 207
            RS+DRLVSYGER+SVRMMAATLNK GVPAQHFDAW LGMRT  EFGNA+VLDE+YPLI+E+LSKFDPSM
Sbjct:  237 RSRDRLVSYGERMSVRMMAATLNKAGVPAQHFDAWTLGMRTTDEFGNADVLDESYPLIKETLSKFDPSM 305
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BLAST of mRNA_H-elongata_contig181939.4876.1 vs. uniprot
Match: D7FXQ9_ECTSI (Aspartokinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ9_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.180e-32
Identity = 58/69 (84.06%), Postives = 64/69 (92.75%), Query Frame = 1 
Query:    1 RSKDRLVSYGERLSVRMMAATLNKVGVPAQHFDAWALGMRTNSEFGNAEVLDETYPLIRESLSKFDPSM 207
            RS+DRLVSYGER+SVRMMAA LNK GVPAQHFDAW LGMRT  EFGNA+VLDE+YPLI+E+LSKFDPSM
Sbjct:  214 RSRDRLVSYGERMSVRMMAAVLNKAGVPAQHFDAWTLGMRTTDEFGNADVLDESYPLIKETLSKFDPSM 282
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BLAST of mRNA_H-elongata_contig181939.4876.1 vs. uniprot
Match: A0A835ZI76_9STRA (Aspartokinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI76_9STRA)

HSP 1 Score: 102 bits (253), Expect = 8.240e-24
Identity = 45/66 (68.18%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 RSKDRLVSYGERLSVRMMAATLNKVGVPAQHFDAWALGMRTNSEFGNAEVLDETYPLIRESLSKFD 198
            R++D L S+GER+SVR+MAA LNK+GVPAQHFDAW LG+RT  EFGNA+VLDE+YP I+E + +FD
Sbjct:  129 RTRDHLQSFGERMSVRVMAAVLNKLGVPAQHFDAWTLGLRTTGEFGNADVLDESYPRIKEVMRRFD 194
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BLAST of mRNA_H-elongata_contig181939.4876.1 vs. uniprot
Match: A0A4D9D6A5_9STRA (Aspartokinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6A5_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 8.430e-22
Identity = 43/69 (62.32%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 RSKDRLVSYGERLSVRMMAATLNKVGVPAQHFDAWALGMRTNSEFGNAEVLDETYPLIRESLSKFDPSM 207
            R+ D LVS+GERLSVR++AA LN++GVPAQHF++W+LG+RTNS+FG AE+L E+Y  I+E++ K D SM
Sbjct:  106 RTLDYLVSFGERLSVRIVAARLNQLGVPAQHFESWSLGLRTNSDFGKAEILPESYSAIKEAMKKLDDSM 174
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BLAST of mRNA_H-elongata_contig181939.4876.1 vs. uniprot
Match: W7U6D4_9STRA (Aspartate kinase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6D4_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.180e-21
Identity = 43/69 (62.32%), Postives = 59/69 (85.51%), Query Frame = 1 
Query:    1 RSKDRLVSYGERLSVRMMAATLNKVGVPAQHFDAWALGMRTNSEFGNAEVLDETYPLIRESLSKFDPSM 207
            R+ D LVS+GERLSVR++AA LN++GVPAQHF++W+LG+RTNS+FG AE+L E+Y  I+E++ K D SM
Sbjct:  227 RTLDYLVSFGERLSVRIVAARLNQLGVPAQHFESWSLGLRTNSDFGKAEILPESYSAIKEAMKKLDDSM 295
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BLAST of mRNA_H-elongata_contig181939.4876.1 vs. uniprot
Match: A0A7S2DCP2_9STRA (Aspartokinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCP2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.840e-18
Identity = 38/69 (55.07%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 RSKDRLVSYGERLSVRMMAATLNKVGVPAQHFDAWALGMRTNSEFGNAEVLDETYPLIRESLSKFDPSM 207
            R++D LVS+GER+SVR++A+ LN +GVP+++F++W LGMRT S+FGNA V + +Y  +R+ LS FDP M
Sbjct:  171 RTRDLLVSFGERMSVRLVASCLNSMGVPSEYFESWTLGMRTTSDFGNALVDESSYGPLRDKLSSFDPLM 239
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BLAST of mRNA_H-elongata_contig181939.4876.1 vs. uniprot
Match: B7G5H9_PHATC (Aspartokinase n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G5H9_PHATC)

HSP 1 Score: 85.1 bits (209), Expect = 1.010e-17
Identity = 40/69 (57.97%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 RSKDRLVSYGERLSVRMMAATLNKVGVPAQHFDAWALGMRTNSEFGNAEVLDETYPLIRESLSKFDPSM 207
            +S D+LVSYGER SVR+MAA LN++GVPAQ FDAW +GM T+SEFG+A++L E+   IR +  + DP++
Sbjct:  184 KSLDQLVSYGERCSVRIMAARLNQLGVPAQAFDAWDVGMITDSEFGDAKILAESEDAIRNAFDRIDPNI 252
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BLAST of mRNA_H-elongata_contig181939.4876.1 vs. uniprot
Match: A0A7S2A082_TRICV (Aspartokinase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A082_TRICV)

HSP 1 Score: 84.0 bits (206), Expect = 2.120e-17
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    1 RSKDRLVSYGERLSVRMMAATLNKVGVPAQHFDAWALGMRTNSEFGNAEVLDETYPLIRESLSKFDPSM 207
            +S D+LVSYGER SVR++AA LN++GVPAQ FDAW +G+ T+S FG+A +L ET   I+E + K DP++
Sbjct:   67 KSLDQLVSYGERCSVRIVAARLNQIGVPAQAFDAWDVGIHTDSNFGDARLLTETPGTIKEMMDKIDPNV 135
[Close]
BLAST of mRNA_H-elongata_contig181939.4876.1 vs. uniprot
Match: A0A7S3PCD4_9STRA (Aspartate kinase n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PCD4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.620e-17
Identity = 39/69 (56.52%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:    1 RSKDRLVSYGERLSVRMMAATLNKVGVPAQHFDAWALGMRTNSEFGNAEVLDETYPLIRESLSKFDPSM 207
            +S D+LVSYGER SVR+MAA LN++GVPAQ FDAW +G+ T+S FG+A++L ++   +R++ SK DPS+
Sbjct:  223 KSLDQLVSYGERCSVRIMAARLNQIGVPAQAFDAWDVGIFTDSTFGDAKLLPKSEDAVRKAFSKIDPSI 291
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BLAST of mRNA_H-elongata_contig181939.4876.1 vs. uniprot
Match: A0A1Z5KAY5_FISSO (Aspartokinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAY5_FISSO)

HSP 1 Score: 82.8 bits (203), Expect = 6.570e-17
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    1 RSKDRLVSYGERLSVRMMAATLNKVGVPAQHFDAWALGMRTNSEFGNAEVLDETYPLIRESLSKFDPSM 207
            +S D+LVSYGER SVR+MAA LN++GVPAQ FDAW +G+ T++EFG+A +L      IR++  K DP++
Sbjct:  174 KSLDQLVSYGERCSVRIMAARLNQIGVPAQAFDAWEVGVLTSAEFGDARLLPSAEKAIRDAFDKIDPNI 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181939.4876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JA47_9PHAE1.250e-3285.51Aspartokinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
D7FXQ9_ECTSI3.180e-3284.06Aspartokinase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A835ZI76_9STRA8.240e-2468.18Aspartokinase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A4D9D6A5_9STRA8.430e-2262.32Aspartokinase n=1 Tax=Nannochloropsis salina CCMP1... [more]
W7U6D4_9STRA1.180e-2162.32Aspartate kinase n=1 Tax=Nannochloropsis gaditana ... [more]
A0A7S2DCP2_9STRA2.840e-1855.07Aspartokinase n=1 Tax=Dictyocha speculum TaxID=356... [more]
B7G5H9_PHATC1.010e-1757.97Aspartokinase n=3 Tax=Phaeodactylum tricornutum Ta... [more]
A0A7S2A082_TRICV2.120e-1756.52Aspartokinase (Fragment) n=1 Tax=Trieres chinensis... [more]
A0A7S3PCD4_9STRA2.620e-1756.52Aspartate kinase n=2 Tax=Amphora coffeiformis TaxI... [more]
A0A1Z5KAY5_FISSO6.570e-1755.07Aspartokinase n=2 Tax=Fistulifera solaris TaxID=15... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181939contigH-elongata_contig181939:772..978 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2.1e-26
Seed eggNOG ortholog2880.D7FXQ9
Preferred nameHOM3
KEGG rclassRC00002,RC00043
KEGG koko:K00928
KEGG ReactionR00480
KEGG Pathwayko00260,ko00261,ko00270,ko00300,ko01100,ko01110,ko01120,ko01130,ko01210,ko01230,map00260,map00261,map00270,map00300,map01100,map01110,map01120,map01130,map01210,map01230
KEGG ModuleM00016,M00017,M00018,M00033,M00525,M00526,M00527
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0004072,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006531,GO:0006553,GO:0006555,GO:0006566,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009085,GO:0009086,GO:0009088,GO:0009089,GO:0009090,GO:0009092,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0019202,GO:0019752,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046451,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.aspartate kinase activity
EggNOG OGsCOG0527@1,KOG0456@2759
Ec32 ortholog descriptionaspartate kinase
Ec32 orthologEc-13_002530.1
EC2.7.2.4
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930048.2974274-CDS-H-elongata_contig181939:771..9781622930048.2974274-CDS-H-elongata_contig181939:771..978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181939 772..978 +
1691679260.683142-CDS-H-elongata_contig181939:771..9781691679260.683142-CDS-H-elongata_contig181939:771..978Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181939 772..978 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181939.4876.1prot_H-elongata_contig181939.4876.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181939 772..978 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181939.4876.1

>prot_H-elongata_contig181939.4876.1 ID=prot_H-elongata_contig181939.4876.1|Name=mRNA_H-elongata_contig181939.4876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
RSKDRLVSYGERLSVRMMAATLNKVGVPAQHFDAWALGMRTNSEFGNAEV
LDETYPLIRESLSKFDPSM
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mRNA from alignment at H-elongata_contig181939:772..978+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181939.4876.1 ID=mRNA_H-elongata_contig181939.4876.1|Name=mRNA_H-elongata_contig181939.4876.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig181939:772..978+ (Himanthalia elongata Himel1 dioecious)
AGGAGCAAGGACCGGCTGGTGTCTTACGGCGAGAGATTATCAGTCCGCAT
GATGGCGGCAACGCTCAACAAGGTGGGGGTCCCGGCGCAGCACTTTGACG
CGTGGGCTCTCGGGATGCGCACCAACAGCGAGTTCGGCAACGCGGAGGTG
CTGGATGAGACCTACCCCCTGATCCGGGAGAGCCTCTCCAAGTTCGACCC
AAGCATG
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Coding sequence (CDS) from alignment at H-elongata_contig181939:772..978+

>mRNA_H-elongata_contig181939.4876.1 ID=mRNA_H-elongata_contig181939.4876.1|Name=mRNA_H-elongata_contig181939.4876.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig181939:772..978+ (Himanthalia elongata Himel1 dioecious)
AGGAGCAAGGACCGGCTGGTGTCTTACGGCGAGAGATTATCAGTCCGCAT
GATGGCGGCAACGCTCAACAAGGTGGGGGTCCCGGCGCAGCACTTTGACG
CGTGGGCTCTCGGGATGCGCACCAACAGCGAGTTCGGCAACGCGGAGGTG
CTGGATGAGACCTACCCCCTGATCCGGGAGAGCCTCTCCAAGTTCGACCC
AAGCATGAGGAGCAAGGACCGGCTGGTGTCTTACGGCGAGAGATTATCAG
TCCGCATGATGGCGGCAACGCTCAACAAGGTGGGGGTCCCGGCGCAGCAC
TTTGACGCGTGGGCTCTCGGGATGCGCACCAACAGCGAGTTCGGCAACGC
GGAGGTGCTGGATGAGACCTACCCCCTGATCCGGGAGAGCCTCTCCAAGT
TCGACCCAAGCATG
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