mRNA_H-elongata_contig1818.4868.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1818.4868.1
Unique NamemRNA_H-elongata_contig1818.4868.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig1818.4868.1 vs. uniprot
Match: A0A6H5KCG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG6_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.740e-30
Identity = 59/123 (47.97%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    1 RSVSGITVMLRDTAIEWKSSTQKCVTTATCEAEYLPLFDASKEAFFMRAVLVFLQPKINGMKVDIFGDNEGPKPIANNPISASLSKHIDVKLYFIRGLIRAGEVHVLHVVEEKQHAGVLTKPL 369
            RSVSG  V +    + W S TQKCV+ +T EAEYL + D  KEA F+  +L FL+P +   K+D+  DNEG   +A NP+S+S SKHIDV+ +F+R L   G + V HV  ++QHA +LTK L
Sbjct:  119 RSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 241
[Close]
BLAST of mRNA_H-elongata_contig1818.4868.1 vs. uniprot
Match: A0A6H5JRE7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE7_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.890e-30
Identity = 60/123 (48.78%), Postives = 82/123 (66.67%), Query Frame = 1 
Query:    1 RSVSGITVMLRDTAIEWKSSTQKCVTTATCEAEYLPLFDASKEAFFMRAVLVFLQPKINGMKVDIFGDNEGPKPIANNPISASLSKHIDVKLYFIRGLIRAGEVHVLHVVEEKQHAGVLTKPL 369
            RSVSG  V++    + W S TQKCV+ +T EAEY+ + D  KEAFF+  +L FL+P     K+D+F DNEG   +A NP+S+S SKHIDV+ +F+R L   G + V HV  ++QHA +LTK L
Sbjct:  246 RSVSGALVLVVGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEAFFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 368
[Close]
BLAST of mRNA_H-elongata_contig1818.4868.1 vs. uniprot
Match: A0A6H5JTP8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTP8_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.840e-29
Identity = 58/123 (47.15%), Postives = 79/123 (64.23%), Query Frame = 1 
Query:    1 RSVSGITVMLRDTAIEWKSSTQKCVTTATCEAEYLPLFDASKEAFFMRAVLVFLQPKINGMKVDIFGDNEGPKPIANNPISASLSKHIDVKLYFIRGLIRAGEVHVLHVVEEKQHAGVLTKPL 369
            RSVSG  V +    + W + TQKCV+ +T EAEY+ + D  KEA F+  +L FL+P     K+D+F DNEG   +A NP+S+S SKHIDV+ +F+R L   G + V HV  + QHA +LTK L
Sbjct:  151 RSVSGALVRVAGCLVSWFAWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKVQHADILTKAL 273
[Close]
BLAST of mRNA_H-elongata_contig1818.4868.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.380e-29
Identity = 60/123 (48.78%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    1 RSVSGITVMLRDTAIEWKSSTQKCVTTATCEAEYLPLFDASKEAFFMRAVLVFLQPKINGMKVDIFGDNEGPKPIANNPISASLSKHIDVKLYFIRGLIRAGEVHVLHVVEEKQHAGVLTKPL 369
            RSVSG  V++    + W S TQKCV+ +T EAEYL + D  KEA F+  +L FL+P     K+D+  DNEG   +A NP+S+S SKHIDV+ +F+R L   G + V HV  E+QHA +LTK L
Sbjct:  356 RSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 478
[Close]
BLAST of mRNA_H-elongata_contig1818.4868.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.420e-29
Identity = 60/123 (48.78%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    1 RSVSGITVMLRDTAIEWKSSTQKCVTTATCEAEYLPLFDASKEAFFMRAVLVFLQPKINGMKVDIFGDNEGPKPIANNPISASLSKHIDVKLYFIRGLIRAGEVHVLHVVEEKQHAGVLTKPL 369
            RSVSG  V++    + W S TQKCV+ +T EAEYL + D  KEA F+  +L FL+P     K+D+  DNEG   +A NP+S+S SKHIDV+ +F+R L   G + V HV  E+QHA +LTK L
Sbjct:  821 RSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 943
[Close]
BLAST of mRNA_H-elongata_contig1818.4868.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.470e-29
Identity = 60/123 (48.78%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    1 RSVSGITVMLRDTAIEWKSSTQKCVTTATCEAEYLPLFDASKEAFFMRAVLVFLQPKINGMKVDIFGDNEGPKPIANNPISASLSKHIDVKLYFIRGLIRAGEVHVLHVVEEKQHAGVLTKPL 369
            RSVSG  V++    + W S TQKCV+ +T EAEYL + D  KEA F+  +L FL+P     K+D+  DNEG   +A NP+S+S SKHIDV+ +F+R L   G + V HV  E+QHA +LTK L
Sbjct: 1088 RSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 1210
[Close]
BLAST of mRNA_H-elongata_contig1818.4868.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 6.490e-29
Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 1 
Query:    1 RSVSGITVMLRDTAIEWKSSTQKCVTTATCEAEYLPLFDASKEAFFMRAVLVFLQPKINGMKVDIFGDNEGPKPIANNPISASLSKHIDVKLYFIRGLIRAGEVHVLHVVEEKQHAGVLTKPL 369
            RSVSG  V++    + W S TQKCV+ +T EAEY+ + D  KEA F+  +L FL+P     K+D+F DNEG   +A NP+S+S SKHIDV+ +F+R L   G + V HV  ++QHA +LTK L
Sbjct: 1141 RSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 1263
[Close]
BLAST of mRNA_H-elongata_contig1818.4868.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.650e-28
Identity = 59/123 (47.97%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    1 RSVSGITVMLRDTAIEWKSSTQKCVTTATCEAEYLPLFDASKEAFFMRAVLVFLQPKINGMKVDIFGDNEGPKPIANNPISASLSKHIDVKLYFIRGLIRAGEVHVLHVVEEKQHAGVLTKPL 369
            RSVSG  V +    + W S TQKCV+ +T EAEYL + D  KEA F+  +L FL+P +   K+D+  DNEG   +A NP+S+S SKHIDV+ +F+R L   G + V HV  ++QHA +LTK L
Sbjct: 1262 RSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 1384
[Close]
BLAST of mRNA_H-elongata_contig1818.4868.1 vs. uniprot
Match: A0A6H5KBM6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBM6_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 3.130e-28
Identity = 57/123 (46.34%), Postives = 78/123 (63.41%), Query Frame = 1 
Query:    1 RSVSGITVMLRDTAIEWKSSTQKCVTTATCEAEYLPLFDASKEAFFMRAVLVFLQPKINGMKVDIFGDNEGPKPIANNPISASLSKHIDVKLYFIRGLIRAGEVHVLHVVEEKQHAGVLTKPL 369
            RSVSG  V++    + W S TQKCV+ +  EAEY  + D  K+A F+  +L FL+P  N  K+D+  DNE    +A NP+S+S SKHIDV+ +F+R L   G + V HV  E+QHA +LTK L
Sbjct:  190 RSVSGAIVLVASMPVVWISKTQKCVSQSISEAEYFAMGDGVKKALFVNGMLQFLRPSANPRKIDVLEDNEEAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 312
[Close]
BLAST of mRNA_H-elongata_contig1818.4868.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 3.880e-28
Identity = 58/123 (47.15%), Postives = 80/123 (65.04%), Query Frame = 1 
Query:    1 RSVSGITVMLRDTAIEWKSSTQKCVTTATCEAEYLPLFDASKEAFFMRAVLVFLQPKINGMKVDIFGDNEGPKPIANNPISASLSKHIDVKLYFIRGLIRAGEVHVLHVVEEKQHAGVLTKPL 369
            RSVSG  V++    + W S TQKCV+ +T EAEY+ + D  KEA F+  +L  L+P     K+D+F DNEG   +A NP+S+S SKHIDV+ +F+R L   G + V HV  ++QHA +LTK L
Sbjct:  586 RSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 708
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1818.4868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCG6_9PHAE1.740e-3047.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRE7_9PHAE1.890e-3048.78Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTP8_9PHAE2.840e-2947.15Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9B2_9PHAE3.380e-2948.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE3.420e-2948.78Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE3.470e-2948.78Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JH25_9PHAE6.490e-2947.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE1.650e-2847.97Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBM6_9PHAE3.130e-2846.34Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE3.880e-2847.15Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1818contigH-elongata_contig1818:2314..2682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score85.1
Seed ortholog evalue2.3e-14
Seed eggNOG ortholog7237.FBpp0285118
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SH01@50557,41WYJ@6656,45B7T@7147,45Z56@7214,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.548814-CDS-H-elongata_contig1818:2313..26581622930047.548814-CDS-H-elongata_contig1818:2313..2658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1818 2314..2658 -
1691679260.384363-CDS-H-elongata_contig1818:2313..26581691679260.384363-CDS-H-elongata_contig1818:2313..2658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1818 2314..2658 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.5835643-UTR-H-elongata_contig1818:2658..26821622930047.5835643-UTR-H-elongata_contig1818:2658..2682Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1818 2659..2682 -
1691679260.3931637-UTR-H-elongata_contig1818:2658..26821691679260.3931637-UTR-H-elongata_contig1818:2658..2682Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1818 2659..2682 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1818.4868.1prot_H-elongata_contig1818.4868.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1818 2314..2658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1818.4868.1

>prot_H-elongata_contig1818.4868.1 ID=prot_H-elongata_contig1818.4868.1|Name=mRNA_H-elongata_contig1818.4868.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MLRDTAIEWKSSTQKCVTTATCEAEYLPLFDASKEAFFMRAVLVFLQPKI
NGMKVDIFGDNEGPKPIANNPISASLSKHIDVKLYFIRGLIRAGEVHVLH
VVEEKQHAGVLTKPL
back to top

mRNA from alignment at H-elongata_contig1818:2314..2682-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1818.4868.1 ID=mRNA_H-elongata_contig1818.4868.1|Name=mRNA_H-elongata_contig1818.4868.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=369bp|location=Sequence derived from alignment at H-elongata_contig1818:2314..2682- (Himanthalia elongata Himel1 dioecious)
AGGTCTGTGTCTGGTATTACAGTAATGTTGAGAGACACAGCCATTGAATG
GAAGAGTTCTACGCAAAAATGTGTGACGACTGCCACGTGTGAAGCCGAGT
ACCTTCCTTTGTTCGATGCGTCCAAGGAGGCATTCTTCATGAGAGCTGTC
CTGGTATTCCTGCAACCTAAGATAAACGGGATGAAAGTGGACATTTTCGG
TGACAACGAAGGCCCAAAGCCGATTGCGAACAACCCGATTAGTGCGTCTC
TGAGTAAGCACATTGATGTGAAGCTGTATTTTATTCGAGGATTGATTCGC
GCGGGGGAAGTTCATGTCTTGCACGTGGTGGAGGAGAAACAACATGCCGG
TGTCCTTACGAAACCCCTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1818:2314..2682-

>mRNA_H-elongata_contig1818.4868.1 ID=mRNA_H-elongata_contig1818.4868.1|Name=mRNA_H-elongata_contig1818.4868.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig1818:2314..2682- (Himanthalia elongata Himel1 dioecious)
ATGTTGAGAGACACAGCCATTGAATGGAAGAGTTCTACGCAAAAATGTGT
GACGACTGCCACGTGTGAAGCCGAGTACCTTCCTTTGTTCGATGCGTCCA
AGGAGGCATTCTTCATGAGAGCTGTCCTGGTATTCCTGCAACCTAAGATA
AACGGGATGAAAGTGGACATTTTCGGTGACAACGAAGGCCCAAAGCCGAT
TGCGAACAACCCGATTAGTGCGTCTCTGAGTAAGCACATTGATGTGAAGC
TGTATTTTATTCGAGGATTGATTCGCGCGGGGGAAGTTCATGTCTTGCAC
GTGGTGGAGGAGAAACAACATGCCGGTGTCCTTACGAAACCCCTTATGTT
GAGAGACACAGCCATTGAATGGAAGAGTTCTACGCAAAAATGTGTGACGA
CTGCCACGTGTGAAGCCGAGTACCTTCCTTTGTTCGATGCGTCCAAGGAG
GCATTCTTCATGAGAGCTGTCCTGGTATTCCTGCAACCTAAGATAAACGG
GATGAAAGTGGACATTTTCGGTGACAACGAAGGCCCAAAGCCGATTGCGA
ACAACCCGATTAGTGCGTCTCTGAGTAAGCACATTGATGTGAAGCTGTAT
TTTATTCGAGGATTGATTCGCGCGGGGGAAGTTCATGTCTTGCACGTGGT
GGAGGAGAAACAACATGCCGGTGTCCTTACGAAACCCCTT
back to top