mRNA_H-elongata_contig181792.4867.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181792.4867.1
Unique NamemRNA_H-elongata_contig181792.4867.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5L8A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8A7_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 1.040e-67
Identity = 109/176 (61.93%), Postives = 133/176 (75.57%), Query Frame = 1
Query:    1 MDIFLPPAGGSSAFSVKTCGEPTCPMKSAPISGVHQCPCGRAMHGFRGRGIGADGYGQQRECTDCQKRTAREKAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
            M+ FLP AG SSA  ++ CGEPTC  KS  +S VHQCPCGR+MH F GRGIG +GYGQQREC+DCQK    ++AG+S+  + ++ A   + D+      RRGCRGL+DAGQATMLDV EILS+KW   SDQTVVRCWLKA ILPREH+NALKG+D RLDRED  + A +D+LC +V
Sbjct:    1 MERFLPSAGESSAAGLRPCGEPTCQQKSQLVSAVHQCPCGRSMHAFCGRGIGEEGYGQQRECSDCQKSKGGDQAGSSSSPM-EVDAEENEQDS------RRGCRGLSDAGQATMLDVTEILSQKWESFSDQTVVRCWLKATILPREHENALKGRDTRLDREDK-EAAALDDLCDMV 168          
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 3.200e-44
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 1
Query:  217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
            K    TEMVA+LA  I+ WD VRARKIRRGCRGLNDAGQATMLDV EILSEKW   S QTV+RCWLKA+ILPREH+NALKGKD RLDRED  D AIID+LC +V
Sbjct:  287 KCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIIDDLCEMV 390          
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.340e-43
Identity = 79/104 (75.96%), Postives = 86/104 (82.69%), Query Frame = 1
Query:  217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
            K    TEMVA+LA  I+ WD VRARKIRRGCRGLNDAGQATMLDV EILSEKW   S QTV+RCWLKA+ILPREH+NALKGKD RLDRED  D AIID+LC +V
Sbjct:  492 KCQYKTEMVARLADLIDVWDAVRARKIRRGCRGLNDAGQATMLDVTEILSEKWESFSSQTVIRCWLKANILPREHENALKGKDTRLDREDKEDTAIIDDLCEMV 595          
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5L2W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W8_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 2.400e-41
Identity = 72/104 (69.23%), Postives = 81/104 (77.88%), Query Frame = 1
Query:  217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
            K    TEMVA+LA  IEDWDTVRARK++RGCRGL+DAGQATML+V EI S+KW  L  QTV+RCWLKA ILPRE  N LKG D RLDRED  D A+ID LC +V
Sbjct:   12 KCQYKTEMVARLAELIEDWDTVRARKVQRGCRGLSDAGQATMLNVTEICSQKWRRLDVQTVIRCWLKAGILPREDCNVLKGMDTRLDREDKDDAAVIDGLCDMV 115          
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5KSV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV5_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 6.530e-40
Identity = 71/104 (68.27%), Postives = 81/104 (77.88%), Query Frame = 1
Query:  217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
            K    TEMV +LAA IEDWDT RA KIRRG RGLNDAGQ TMLDV EI S+KW  +SDQTV+RCWLKA ILP EH++ALK KD RLD+ED G  A +D+LC +V
Sbjct:   10 KCQYKTEMVMRLAALIEDWDTARALKIRRGYRGLNDAGQPTMLDVTEIPSQKWESVSDQTVIRCWLKATILPGEHESALKDKDTRLDQEDPG-AASLDDLCDMV 112          
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5KIE7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE7_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 9.300e-39
Identity = 71/104 (68.27%), Postives = 79/104 (75.96%), Query Frame = 1
Query:  217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
            K    TEMVA+LA  IEDWDTVRARK +RGC+GL+DAGQATMLDV EI S+KW     QTV+ CWLKA ILPREH N LKG D R+DRED  D AIID LC +V
Sbjct:  121 KCRYKTEMVARLADLIEDWDTVRARKFQRGCQGLSDAGQATMLDVTEIGSQKWRSFDVQTVITCWLKAGILPREHCNVLKGMDTRVDREDKDDAAIIDGLCDMV 224          
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.020e-38
Identity = 73/103 (70.87%), Postives = 79/103 (76.70%), Query Frame = 1
Query:  217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGL 525
            K    TEMVA+LA  IEDWDTVRARKI+RGCRGL+DAGQATMLDV EI S+KW     QTV+RCWLKA ILPREH   LKG D RLDRED  D AIID LC +
Sbjct:  324 KCQYKTEMVARLADLIEDWDTVRARKIQRGCRGLSDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCKVLKGMDTRLDREDKDDAAIIDGLCDM 426          
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5JLK3_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK3_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 6.860e-38
Identity = 70/104 (67.31%), Postives = 80/104 (76.92%), Query Frame = 1
Query:  217 KAGTSTEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
            K    TEMV +LAA IEDWDT RAR+IR GCRGLNDAGQ TMLDV E+LS+KW   SDQTV+RCWLKA I P EH++ALK  D RLDRED G  A+ D+LC +V
Sbjct:  210 KCQYKTEMVMRLAALIEDWDTARARQIRTGCRGLNDAGQPTMLDVTEVLSQKWESFSDQTVIRCWLKATIRPGEHESALKDNDTRLDREDPGATAL-DDLCDMV 312          
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5KXD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXD1_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 8.200e-38
Identity = 69/99 (69.70%), Postives = 76/99 (76.77%), Query Frame = 1
Query:  232 TEMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
            TEMV +LA  IEDWDTVRARKI+  CRGLNDAGQATMLDV EI S+KW     QTV+RCWLKA ILPREH N LK  D RLDRED  + AI+D LC +V
Sbjct:   15 TEMVERLADLIEDWDTVRARKIQGECRGLNDAGQATMLDVTEICSQKWRSFDVQTVIRCWLKAGILPREHCNVLKCMDTRLDREDKDNVAIVDGLCDMV 113          
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.160e-35
Identity = 67/98 (68.37%), Postives = 76/98 (77.55%), Query Frame = 1
Query:  235 EMVAKLAAFIEDWDTVRARKIRRGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNALKGKDLRLDREDDGDKAIIDELCGLV 528
            E +A+LA  IEDWDTVRARKI+RGC+G +DAGQAT+LDV EI S+KW     QTV+RCWLKA ILP EH N  KG D RLDRED GD AIID LC +V
Sbjct:  466 EKMARLADLIEDWDTVRARKIQRGCQGFSDAGQATVLDVTEICSQKWRSFDVQTVIRCWLKAGILPTEHCNVPKGMDTRLDREDKGDVAIIDGLCDMV 563          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181792.4867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L8A7_9PHAE1.040e-6761.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEY2_9PHAE3.200e-4475.96HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JV64_9PHAE1.340e-4375.96HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5L2W8_9PHAE2.400e-4169.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSV5_9PHAE6.530e-4068.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIE7_9PHAE9.300e-3968.27DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JNS8_9PHAE1.020e-3870.87HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JLK3_9PHAE6.860e-3867.31HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KXD1_9PHAE8.200e-3869.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEK6_9PHAE2.160e-3568.37DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181792contigH-elongata_contig181792:4..777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size528
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181792.4867.1prot_H-elongata_contig181792.4867.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181792 4..777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.4726758-CDS-H-elongata_contig181792:3..2291622930047.4726758-CDS-H-elongata_contig181792:3..229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181792 4..229 -
1691679260.3609014-CDS-H-elongata_contig181792:3..2291691679260.3609014-CDS-H-elongata_contig181792:3..229Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181792 4..229 -
1622930047.4845765-CDS-H-elongata_contig181792:421..4921622930047.4845765-CDS-H-elongata_contig181792:421..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181792 422..492 -
1691679260.3687408-CDS-H-elongata_contig181792:421..4921691679260.3687408-CDS-H-elongata_contig181792:421..492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181792 422..492 -
1622930047.5032954-CDS-H-elongata_contig181792:546..7771622930047.5032954-CDS-H-elongata_contig181792:546..777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181792 547..777 -
1691679260.3763506-CDS-H-elongata_contig181792:546..7771691679260.3763506-CDS-H-elongata_contig181792:546..777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181792 547..777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181792.4867.1

>prot_H-elongata_contig181792.4867.1 ID=prot_H-elongata_contig181792.4867.1|Name=mRNA_H-elongata_contig181792.4867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
MDIFLPPAGGSSAFSVKTCGEPTCPMKSAPISGVHQCPCGRAMHGFRGRG
IGADGYGQQRECTDCQKRTAREKAGTSTEMVAKLAAFIEDWDTVRARKIR
RGCRGLNDAGQATMLDVVEILSEKWSGLSDQTVVRCWLKADILPREHQNA
LKGKDLRLDREDDGDKAIIDELCGLV
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mRNA from alignment at H-elongata_contig181792:4..777-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181792.4867.1 ID=mRNA_H-elongata_contig181792.4867.1|Name=mRNA_H-elongata_contig181792.4867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=774bp|location=Sequence derived from alignment at H-elongata_contig181792:4..777- (Himanthalia elongata Himel1 dioecious)
ATGGATATATTCCTACCACCTGCTGGCGGTTCGTCTGCATTCAGTGTCAA GACATGTGGAGAACCGACATGCCCGATGAAATCTGCCCCCATCTCGGGAG TGCACCAGTGCCCTTGTGGGCGGGCGATGCATGGGTTTCGTGGTCGAGGC ATCGGGGCAGACGGTTACGGGCAGCAGAGAGAGTGCACAGACTGTCAAAA GAGAACAGCTCGTGAAAAGGCCGGCACATCTGTCTACCAGCCTATGGATA TGGGTATCCTGCATGCCCTCAAGTGTCAGCACAAGACCGAGATGGTGGCG AAGCTGGCGGCCTTCATCGAGGACTGGGACACGGTCCGAGCACGGAAAAT TCGCAGGTAATAAATACGCCTAGTTTTTTTTAAGTTGTTGTCACGACGTT GAGAATATCCAAAAGCCTCTGTAGGTACACTACGATCTTGCTATTCGTAG GCACGTGAGTTGCGGTAGTTGGTGCTCGCAACATGACATCGTACAGTGAT GTCCGTCTACTTGCTGCACTTGCTTGTTACCCGGACGCAATTCGGCAGGG GGTGCCGGGGCTTGAACGACGCAGGTCAGGCGACAATGCTGGACGTTGTT GAGATCCTTTCCGAGAAGTGGAGCGGCCTCTCTGACCAGACTGTCGTCAG GTGCTGGCTCAAGGCCGACATCCTTCCCAGGGAACACCAGAACGCGCTCA AGGGCAAGGACCTGCGGCTAGATCGAGAGGACGATGGGGACAAGGCCATC ATCGACGAGCTTTGCGGATTGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig181792:4..777-

>mRNA_H-elongata_contig181792.4867.1 ID=mRNA_H-elongata_contig181792.4867.1|Name=mRNA_H-elongata_contig181792.4867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig181792:4..777- (Himanthalia elongata Himel1 dioecious)
ATGGATATATTCCTACCACCTGCTGGCGGTTCGTCTGCATTCAGTGTCAA
GACATGTGGAGAACCGACATGCCCGATGAAATCTGCCCCCATCTCGGGAG
TGCACCAGTGCCCTTGTGGGCGGGCGATGCATGGGTTTCGTGGTCGAGGC
ATCGGGGCAGACGGTTACGGGCAGCAGAGAGAGTGCACAGACTGTCAAAA
GAGAACAGCTCGTGAAAAGGCCGGCACATCTATGGATATATTCCTACCAC
CTGCTGGCGGTTCGTCTGCATTCAGTGTCAAGACATGTGGAGAACCGACA
TGCCCGATGAAATCTGCCCCCATCTCGGGAGTGCACCAGTGCCCTTGTGG
GCGGGCGATGCATGGGTTTCGTGGTCGAGGCATCGGGGCAGACGGTTACG
GGCAGCAGAGAGAGTGCACAGACTGTCAAAAGAGAACAGCTCGTGAAAAG
GCCGGCACATCTACCGAGATGGTGGCGAAGCTGGCGGCCTTCATCGAGGA
CTGGGACACGGTCCGAGCACGGAAAATTCGCAGACCGAGATGGTGGCGAA
GCTGGCGGCCTTCATCGAGGACTGGGACACGGTCCGAGCACGGAAAATTC
GCAGGGGGTGCCGGGGCTTGAACGACGCAGGTCAGGCGACAATGCTGGAC
GTTGTTGAGATCCTTTCCGAGAAGTGGAGCGGCCTCTCTGACCAGACTGT
CGTCAGGTGCTGGCTCAAGGCCGACATCCTTCCCAGGGAACACCAGAACG
CGCTCAAGGGCAAGGACCTGCGGCTAGATCGAGAGGACGATGGGGACAAG
GCCATCATCGACGAGCTTTGCGGATTGGTCGGGGTGCCGGGGCTTGAACG
ACGCAGGTCAGGCGACAATGCTGGACGTTGTTGAGATCCTTTCCGAGAAG
TGGAGCGGCCTCTCTGACCAGACTGTCGTCAGGTGCTGGCTCAAGGCCGA
CATCCTTCCCAGGGAACACCAGAACGCGCTCAAGGGCAAGGACCTGCGGC
TAGATCGAGAGGACGATGGGGACAAGGCCATCATCGACGAGCTTTGCGGA
TTGGTC
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