mRNA_H-elongata_contig18162.4864.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig18162.4864.1
Unique Name	mRNA_H-elongata_contig18162.4864.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot
Match: A0A6H5KIW5_9PHAE (Aqp protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIW5_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 5.120e-78
Identity = 120/172 (69.77%), Postives = 143/172 (83.14%), Query Frame = 2

Query:    2 YILADTSGAHLNPAISMGLLVGKRISFEQFVIYFIVQILGALAGAGIATTFLDSTGGGYNVVNDGFIAVNAFGGEVLSTFLLVLTVFASSDGELGRHNAFVGPLVPWAIGMAVLLAHLIMIPIDGCSINPARSFATAVTNNKWDDHWVFWVGPMVGGILATIVWETILRPEQ 517
            YI  D SGAHLNPA+S+GLLVGKRIS E+F++Y I Q+ GA AGAGIA+T+L +T GG+N + D   A +AFG EVL TFLLV+TVFA+ DGELGR  A  GPL+P  IGMAVLLAHL++IPIDG SINPARSFATAVTNN+W DHWVFWVGP++GG+LAT+ WE ILRP+Q
Sbjct:   93 YIFVDVSGAHLNPAVSIGLLVGKRISVERFLLYVIAQMAGATAGAGIASTYLSTTRGGFNALADNVSATDAFGAEVLCTFLLVVTVFAACDGELGRKTAHTGPLLPLVIGMAVLLAHLVLIPIDGASINPARSFATAVTNNEWGDHWVFWVGPLLGGVLATVTWEAILRPDQ 264

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BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot
Match: A0A6H5JZJ3_9PHAE (Aqp protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ3_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 2.840e-75
Identity = 118/175 (67.43%), Postives = 140/175 (80.00%), Query Frame = 2

Query:    2 YILADTSGAHLNPAISMGLLVGKRISFEQFVIYFIVQILGALAGAGIATTFLDSTGGGYNVVNDGFIAVNAFGGEVLSTFLLVLTVFASSDGELGRHNAFVGPLVPWAIGMAVLLAHLIMIPIDGCSINPARSFATAVTNNKWDDHWVFWVGPMVGGILATIVWETILRPEQPFD 526
            YI AD SGAHLNPA+SM LLVGKRIS E+F +Y + Q+ G + GA +A +F  +TGGG+N + DG  A+ AFG EVL TFLLV+TVF + DGELGR NA  GPL+P  IGMAVL+AHL++IPIDGCSINPARSFATAV NNKWDDHWVFWVGP++GG+L T  WE ILRP+Q  D
Sbjct:  328 YIFADVSGAHLNPAVSMSLLVGKRISIERFGLYVVAQMAGGVIGASMANSFPSTTGGGFNAIADGVSAIEAFGAEVLCTFLLVVTVFTACDGELGRKNAHTGPLLPLVIGMAVLIAHLVLIPIDGCSINPARSFATAVINNKWDDHWVFWVGPLLGGVLGTATWEAILRPDQTVD 502

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BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot
Match: D8LTV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTV4_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 1.370e-62
Identity = 107/175 (61.14%), Postives = 120/175 (68.57%), Query Frame = 2

Query:    2 YILADTSGAHLNPAISMGLLVGKRISFEQFVIYFIVQILGALAGAGIATTFLDSTGGGYNVVNDGFIAVNAFGGEVLSTFLLVLTVFASSDGELGRHNAFVGPLVPWAIGMAVLLAHLIMIPIDGCSINPARSFATAVTNNKWDDHWVFWVGPMVGGILATIVWETILRPEQPFD 526
            YI AD SGAHLNPA+SM LLVGKRIS E+F +Y   Q                              A  AFG EVL TFLLV+TVF + DGELGR NA  GPL+P  IGMAVL+AHL++IPIDGCSINPARSFATAV NNKWDDHWVFWVGP++GG+L T  WE ILRP+QP D
Sbjct:  118 YIFADVSGAHLNPAVSMSLLVGKRISIERFGLYVAAQ------------------------------AGEAFGAEVLCTFLLVVTVFTACDGELGRKNAHTGPLLPLVIGMAVLIAHLVLIPIDGCSINPARSFATAVINNKWDDHWVFWVGPLLGGVLGTATWEAILRPDQPVD 262

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BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot
Match: A0A835YY46_9STRA (Aquaporin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY46_9STRA)

HSP 1 Score: 183 bits (464), Expect = 7.830e-50
Identity = 85/177 (48.02%), Postives = 120/177 (67.80%), Query Frame = 2

Query:    2 YILADTSGAHLNPAISMGLLVGKRISFEQFVIYFIVQILGALAGAGIATTFLDS----TGGGYNVVNDGFIAVNAFGGEVLSTFLLVLTVFASSDGELGRHNAFVGPLVPWAIGMAVLLAHLIMIPIDGCSINPARSFATAVTNNKWDDHWVFWVGPMVGGILATIVWETILRPEQP 520
            Y+ AD SGA++NPA+S GL +GKRI+ ++  +Y I Q LGA+ G G+A +   +    T GG NVVN+   A  A GGE+L T+LLV  V  +++  L +       L+PW IGM V+L H  ++P+DGCSINPARSF +A+  N W DHWVFW+GP++G  +AT+++E ILRP +P
Sbjct:   86 YLFADVSGANINPAVSWGLCLGKRITLKRCGLYIIAQCLGAIIGVGLACSMSKAHFWETNGGANVVNNQVGAHQALGGEILCTWLLVTVVLCATNPGLQKAYVHQAVLLPWVIGMTVMLCHFTLVPVDGCSINPARSFGSAIITNTWKDHWVFWLGPLIGATIATLLFEAILRPPEP 262

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BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot
Match: PIP27_ORYSJ (Probable aquaporin PIP2-7 n=16 Tax=cellular organisms TaxID=131567 RepID=PIP27_ORYSJ)

HSP 1 Score: 164 bits (416), Expect = 5.610e-43
Identity = 80/178 (44.94%), Postives = 112/178 (62.92%), Query Frame = 2

Query:    2 YILADTSGAHLNPAISMGLLVGKRISFEQFVIYFIVQILGALAGAGIATTFL----DSTGGGYNVVNDGFIAVNAFGGEVLSTFLLVLTVFASSDGELGRHNAFVGPLVPWAIGMAVLLAHLIMIPIDGCSINPARSFATAVTNNK---WDDHWVFWVGPMVGGILATIVWETILRPE 514
            Y     SG H+NPA+++GL  G+++S  + V+Y + Q LGA+AGAGI    +    D+ GGG N V+DG+ A  A G E++ TF+LV TVF+++D +    ++F+  LVP  IG AV + HL  IPI G  INPARS   AV  N+   W DHW+FWVGP++G  LA    + +LR E
Sbjct:   98 YCTGGVSGGHINPAVTLGLFFGRKLSLVRTVLYVVAQCLGAIAGAGIVKGIMKRPYDALGGGANTVSDGYSAAGALGAEIVGTFILVYTVFSATDPKRTARDSFIPVLVPLPIGFAVFVVHLATIPITGTGINPARSLGAAVLYNQHAAWKDHWIFWVGPVIGAFLAAAYHKLVLRGE 275

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BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot
Match: Q5DVT8_MIMPU (Plasma membrane intrinsic protein 2;2 n=1 Tax=Mimosa pudica TaxID=76306 RepID=Q5DVT8_MIMPU)

HSP 1 Score: 163 bits (413), Expect = 1.360e-42
Identity = 80/176 (45.45%), Postives = 109/176 (61.93%), Query Frame = 2

Query:    2 YILADTSGAHLNPAISMGLLVGKRISFEQFVIYFIVQILGALAGAGIATTF----LDSTGGGYNVVNDGFIAVNAFGGEVLSTFLLVLTVFASSDGELGRHNAFVGPLVPWAIGMAVLLAHLIMIPIDGCSINPARSFATAVTNNK---WDDHWVFWVGPMVGGILATIVWETILR 508
            Y  A  SG H+NPA++ GL +G+++S  + V+Y + Q+ GA+ GAG+A  F     D  GGG N V DG+    A G E++ TF+LV TVF+++D +    ++ V  L P  IG AV + HL  IP+ G  INPARSF  AV  NK   WDDHW+FWVGP +G  +A I  + ILR
Sbjct:   97 YCTAGISGGHINPAVTFGLFLGRKVSLIRAVLYILAQMAGAICGAGLAKAFQKSYYDRYGGGANFVQDGYSTGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNKDKIWDDHWIFWVGPAIGAAVAAIYHQHILR 272

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BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot
Match: I0ZAA7_COCSC (Plasma membrane intrinsic protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0ZAA7_COCSC)

HSP 1 Score: 164 bits (415), Expect = 1.430e-42
Identity = 79/173 (45.66%), Postives = 106/173 (61.27%), Query Frame = 2

Query:    2 YILADTSGAHLNPAISMGLLVGKRISFEQFVIYFIVQILGALAGAGIATTFLD----STGGGYNVVNDGFIAVNAFGGEVLSTFLLVLTVFASSDGELGRHNAFVGPLVPWAIGMAVLLAHLIMIPIDGCSINPARSFATAVTNNKWDDHWVFWVGPMVGGILATIVWETILR 508
            Y  A  SG H+NPA++ G+ V ++IS  + V+Y + Q LGA  GAG+     D    + GGG N ++ GF     +G E + T  LV TVFA++D E     A +  L P+AIGM V L HL+ IP+DGCSINPARSF  A  +  WD+ WVFWVGP+ G +LA  ++E I R
Sbjct:   94 YCAASFSGGHINPAVTFGMFVARKISVLRAVLYMVAQCLGACTGAGLVRAIDDDGWRAAGGGANALSPGFGEAAGWGLETILTMALVFTVFAATDSERATDTAHLPVLAPFAIGMVVFLCHLVAIPLDGCSINPARSFGAAAVSGSWDNQWVFWVGPLSGAVLAAAIYELIFR 266

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BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot
Match: A0A5J5UU78_GOSBA (Uncharacterized protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A5J5UU78_GOSBA)

HSP 1 Score: 161 bits (407), Expect = 5.380e-42
Identity = 82/184 (44.57%), Postives = 111/184 (60.33%), Query Frame = 2

Query:    2 YILADTSGAHLNPAISMGLLVGKRISFEQFVIYFIVQILGALAGAGIATTF-----LDSTGGGYNVVNDGFIAVNAFGGEVLSTFLLVLTVFASSDGELGRHNAFVGPLVPWAIGMAVLLAHLIMIPIDGCSINPARSFATAVTNNK---WDDHWVFWVGPMVGGILATIVWETILRPEQPFDT 529
            Y  A  SG H+NPA++ GL + +++S  + V Y I+Q LGA++GAG+   F      +  GGG NVVN G+   +  G E++ TF+LV TVF+++D +    ++ V  L P  IG AV L HL  IPI G  INPARS   A+  NK   WDDHWVFWVGP +G  LA +  + I+R   PF T
Sbjct:   80 YCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAISGAGVVKGFQGDNRYEMLGGGANVVNHGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWVFWVGPFIGAALAAVYHQIIIRAI-PFKT 262

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BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot
Match: A0A0B0NJM5_GOSAR (Aquaporin PIP1-2-like protein n=2 Tax=Malvoideae TaxID=214907 RepID=A0A0B0NJM5_GOSAR)

HSP 1 Score: 158 bits (400), Expect = 6.180e-42
Identity = 76/177 (42.94%), Postives = 107/177 (60.45%), Query Frame = 2

Query:    2 YILADTSGAHLNPAISMGLLVGKRISFEQFVIYFIVQILGALAGAGIATTFLDST-----GGGYNVVNDGFIAVNAFGGEVLSTFLLVLTVFASSDGELGRHNAFVGPLVPWAIGMAVLLAHLIMIPIDGCSINPARSFATAVTNNK---WDDHWVFWVGPMVGGILATIVWETILR 508
            Y  A  SG H+NPA++ GL +G+++S  + + Y ++Q LGA+ GAG+   F+  T     GGG N VN G+   +  G E++ TF+LV TVF+++D +    ++ V  L P  IG AV L HL  IPI G  INPARS   A+  NK   WDDHW+FWVGP +G  LA +    ++R
Sbjct:    6 YCTAGISGGHINPAVTFGLFLGRKLSLTRAIYYMVMQCLGAICGAGVVKGFMGKTRYGALGGGANSVNHGYTKGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDKGWDDHWIFWVGPFIGAALAALYHVVVIR 182

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BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot
Match: A0A1U8KQ35_GOSHI (aquaporin PIP1-3-like n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8KQ35_GOSHI)

HSP 1 Score: 160 bits (405), Expect = 6.300e-42
Identity = 79/177 (44.63%), Postives = 108/177 (61.02%), Query Frame = 2

Query:    2 YILADTSGAHLNPAISMGLLVGKRISFEQFVIYFIVQILGALAGAGIATTF-----LDSTGGGYNVVNDGFIAVNAFGGEVLSTFLLVLTVFASSDGELGRHNAFVGPLVPWAIGMAVLLAHLIMIPIDGCSINPARSFATAVTNNK---WDDHWVFWVGPMVGGILATIVWETILR 508
            Y  A  SG H+NPA++ GL + +++S  + V Y I+Q LGA+ GAG+   F      +  GGG NVVN G+   +  G E+++TF+LV TVF+++D +    ++ V  L P  IG AV L HL  IPI G  INPARS   A+  NK   WDDHWVFWVGP +G  LA +  + I+R
Sbjct:   31 YCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAGVVKGFQGDNRYEMLGGGANVVNHGYTKGDGLGAEIIATFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWVFWVGPFIGAALAAVYHQMIIR 207

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot

BLAST of mRNA_H-elongata_contig18162.4864.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KIW5_9PHAE	5.120e-78	69.77	Aqp protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0...	[more]
A0A6H5JZJ3_9PHAE	2.840e-75	67.43	Aqp protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta...	[more]
D8LTV4_ECTSI	1.370e-62	61.14	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835YY46_9STRA	7.830e-50	48.02	Aquaporin n=1 Tax=Tribonema minus TaxID=303371 Rep...	[more]
PIP27_ORYSJ	5.610e-43	44.94	Probable aquaporin PIP2-7 n=16 Tax=cellular organi...	[more]
Q5DVT8_MIMPU	1.360e-42	45.45	Plasma membrane intrinsic protein 2;2 n=1 Tax=Mimo...	[more]
I0ZAA7_COCSC	1.430e-42	45.66	Plasma membrane intrinsic protein n=1 Tax=Coccomyx...	[more]
A0A5J5UU78_GOSBA	5.380e-42	44.57	Uncharacterized protein n=2 Tax=Gossypium TaxID=36...	[more]
A0A0B0NJM5_GOSAR	6.180e-42	42.94	Aquaporin PIP1-2-like protein n=2 Tax=Malvoideae T...	[more]
A0A1U8KQ35_GOSHI	6.300e-42	44.63	aquaporin PIP1-3-like n=1 Tax=Gossypium hirsutum T...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig18162	contig	H-elongata_contig18162:3549..7258 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	234.2
Seed ortholog evalue	4.7e-59
Seed eggNOG ortholog	2880.D8LTV5
Preferred name	MIP
KEGG ko	ko:K09863,ko:K09864,ko:K09865,ko:K09866,ko:K09867,ko:K09868,ko:K09872
KEGG TC	1.A.8,1.A.8.11,1.A.8.8
KEGG Pathway	ko04924,ko04962,ko04964,ko04970,ko04976,map04924,map04962,map04964,map04970,map04976
GOs	GO:0000003,GO:0000302,GO:0000323,GO:0001101,GO:0001568,GO:0001654,GO:0001655,GO:0001656,GO:0001666,GO:0001822,GO:0001944,GO:0002088,GO:0002237,GO:0002790,GO:0003008,GO:0003014,GO:0003091,GO:0003094,GO:0003097,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003779,GO:0005102,GO:0005198,GO:0005212,GO:0005215,GO:0005216,GO:0005217,GO:0005221,GO:0005223,GO:0005253,GO:0005261,GO:0005267,GO:0005326,GO:0005372,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005764,GO:0005768,GO:0005769,GO:0005773,GO:0005783,GO:0005791,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0005887,GO:0005901,GO:0005902,GO:0005903,GO:0005911,GO:0006139,GO:0006163,GO:0006164,GO:0006182,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006820,GO:0006833,GO:0006836,GO:0006855,GO:0006869,GO:0006884,GO:0006915,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0006996,GO:0007010,GO:0007015,GO:0007154,GO:0007163,GO:0007267,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007565,GO:0007568,GO:0007586,GO:0007588,GO:0007589,GO:0007600,GO:0007601,GO:0008092,GO:0008150,GO:0008152,GO:0008154,GO:0008219,GO:0008284,GO:0008324,GO:0008361,GO:0008509,GO:0008519,GO:0008643,GO:0009058,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009187,GO:0009190,GO:0009259,GO:0009260,GO:0009314,GO:0009410,GO:0009411,GO:0009414,GO:0009415,GO:0009416,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009605,GO:0009607,GO:0009611,GO:0009612,GO:0009617,GO:0009624,GO:0009628,GO:0009636,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009887,GO:0009888,GO:0009892,GO:0009914,GO:0009925,GO:0009941,GO:0009987,GO:0009991,GO:0010008,GO:0010015,GO:0010033,GO:0010035,GO:0010038,GO:0010053,GO:0010054,GO:0010226,GO:0010243,GO:0010256,GO:0010466,GO:0010496,GO:0010591,GO:0010592,GO:0010605,GO:0010632,GO:0010634,GO:0010817,GO:0010876,GO:0010941,GO:0010951,GO:0010959,GO:0012501,GO:0012505,GO:0012506,GO:0014070,GO:0014074,GO:0015075,GO:0015077,GO:0015079,GO:0015103,GO:0015112,GO:0015144,GO:0015166,GO:0015168,GO:0015238,GO:0015250,GO:0015267,GO:0015276,GO:0015318,GO:0015669,GO:0015670,GO:0015672,GO:0015696,GO:0015698,GO:0015701,GO:0015706,GO:0015711,GO:0015718,GO:0015721,GO:0015722,GO:0015791,GO:0015793,GO:0015833,GO:0015849,GO:0015850,GO:0015893,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016050,GO:0016323,GO:0016324,GO:0018130,GO:0018995,GO:0019222,GO:0019233,GO:0019438,GO:0019637,GO:0019693,GO:0019725,GO:0019755,GO:0019899,GO:0019904,GO:0020003,GO:0021537,GO:0021591,GO:0021670,GO:0021700,GO:0022411,GO:0022414,GO:0022600,GO:0022603,GO:0022607,GO:0022622,GO:0022803,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023052,GO:0023061,GO:0030001,GO:0030029,GO:0030036,GO:0030042,GO:0030054,GO:0030072,GO:0030104,GO:0030133,GO:0030135,GO:0030136,GO:0030141,GO:0030154,GO:0030155,GO:0030157,GO:0030162,GO:0030165,GO:0030184,GO:0030185,GO:0030334,GO:0030335,GO:0030424,GO:0030430,GO:0030658,GO:0030659,GO:0030667,GO:0030900,GO:0030950,GO:0030952,GO:0031045,GO:0031090,GO:0031224,GO:0031225,GO:0031226,GO:0031253,GO:0031300,GO:0031301,GO:0031302,GO:0031303,GO:0031323,GO:0031324,GO:0031344,GO:0031346,GO:0031410,GO:0031526,GO:0031625,GO:0031667,GO:0031668,GO:0031960,GO:0031965,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0032127,GO:0032268,GO:0032269,GO:0032496,GO:0032501,GO:0032502,GO:0032526,GO:0032535,GO:0032809,GO:0032835,GO:0032870,GO:0032879,GO:0032940,GO:0032941,GO:0032984,GO:0032991,GO:0033036,GO:0033267,GO:0033326,GO:0033363,GO:0033554,GO:0033643,GO:0033646,GO:0033655,GO:0033762,GO:0033993,GO:0034219,GO:0034220,GO:0034599,GO:0034614,GO:0034641,GO:0034644,GO:0034654,GO:0035295,GO:0035377,GO:0035378,GO:0035379,GO:0035690,GO:0035821,GO:0036293,GO:0036294,GO:0036477,GO:0040007,GO:0040012,GO:0040017,GO:0042044,GO:0042045,GO:0042060,GO:0042127,GO:0042221,GO:0042383,GO:0042476,GO:0042493,GO:0042538,GO:0042542,GO:0042592,GO:0042594,GO:0042631,GO:0042802,GO:0042886,GO:0042891,GO:0042981,GO:0042995,GO:0043005,GO:0043010,GO:0043025,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043230,GO:0043231,GO:0043269,GO:0043270,GO:0043281,GO:0043434,GO:0043624,GO:0043627,GO:0043656,GO:0043657,GO:0043679,GO:0043855,GO:0043933,GO:0044057,GO:0044058,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044215,GO:0044216,GO:0044217,GO:0044237,GO:0044238,GO:0044241,GO:0044249,GO:0044271,GO:0044281,GO:0044297,GO:0044298,GO:0044306,GO:0044389,GO:0044403,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044433,GO:0044434,GO:0044435,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044706,GO:0044853,GO:0045121,GO:0045177,GO:0045178,GO:0045202,GO:0045765,GO:0045766,GO:0045785,GO:0045861,GO:0046068,GO:0046390,GO:0046483,GO:0046541,GO:0046658,GO:0046677,GO:0046683,GO:0046688,GO:0046689,GO:0046691,GO:0046717,GO:0046873,GO:0046875,GO:0046877,GO:0046878,GO:0046879,GO:0046903,GO:0046942,GO:0048145,GO:0048146,GO:0048364,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048588,GO:0048589,GO:0048592,GO:0048593,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050877,GO:0050878,GO:0050886,GO:0050891,GO:0050896,GO:0050953,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051179,GO:0051181,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051259,GO:0051260,GO:0051261,GO:0051262,GO:0051270,GO:0051272,GO:0051289,GO:0051290,GO:0051291,GO:0051336,GO:0051346,GO:0051384,GO:0051458,GO:0051591,GO:0051592,GO:0051702,GO:0051704,GO:0051707,GO:0051716,GO:0051817,GO:0051851,GO:0051924,GO:0051928,GO:0052547,GO:0052548,GO:0052652,GO:0055037,GO:0055038,GO:0055044,GO:0055085,GO:0055086,GO:0060255,GO:0060322,GO:0060429,GO:0060456,GO:0060491,GO:0060548,GO:0060560,GO:0060986,GO:0061326,GO:0061437,GO:0061440,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0065010,GO:0070062,GO:0070293,GO:0070295,GO:0070301,GO:0070382,GO:0070482,GO:0070633,GO:0070887,GO:0071214,GO:0071229,GO:0071236,GO:0071241,GO:0071248,GO:0071260,GO:0071280,GO:0071288,GO:0071300,GO:0071310,GO:0071320,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071417,GO:0071453,GO:0071456,GO:0071462,GO:0071466,GO:0071470,GO:0071472,GO:0071474,GO:0071478,GO:0071482,GO:0071495,GO:0071496,GO:0071548,GO:0071549,GO:0071695,GO:0071702,GO:0071704,GO:0071705,GO:0071731,GO:0071732,GO:0071804,GO:0071805,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072009,GO:0072012,GO:0072014,GO:0072019,GO:0072020,GO:0072022,GO:0072032,GO:0072044,GO:0072070,GO:0072073,GO:0072080,GO:0072170,GO:0072205,GO:0072207,GO:0072210,GO:0072220,GO:0072224,GO:0072229,GO:0072230,GO:0072232,GO:0072234,GO:0072236,GO:0072237,GO:0072239,GO:0072243,GO:0072358,GO:0072359,GO:0072488,GO:0072521,GO:0072522,GO:0080090,GO:0080147,GO:0080170,GO:0085018,GO:0090066,GO:0090407,GO:0090558,GO:0090596,GO:0090627,GO:0097159,GO:0097205,GO:0097237,GO:0097305,GO:0097327,GO:0097366,GO:0097435,GO:0097458,GO:0097708,GO:0098588,GO:0098589,GO:0098590,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:0098791,GO:0098793,GO:0098805,GO:0098857,GO:0098858,GO:0098862,GO:0099094,GO:0099402,GO:0099503,GO:0104004,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120038,GO:0150034,GO:1901135,GO:1901137,GO:1901293,GO:1901342,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901618,GO:1901652,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170,GO:1902743,GO:1902745,GO:1903561,GO:1904018,GO:1905392,GO:1990349,GO:2000026,GO:2000116,GO:2000117,GO:2000145,GO:2000147
EggNOG free text desc.	water channel activity
EggNOG OGs	COG0580@1,KOG0223@2759
COG Functional cat.	U
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko02000,ko04147
Hectar predicted targeting category	signal anchor
Exons	5
Model size	1670
Cds size	531
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig18162.4864.1	prot_H-elongata_contig18162.4864.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig18162 3598..6168 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930047.1718426-UTR-H-elongata_contig18162:3548..3597	1622930047.1718426-UTR-H-elongata_contig18162:3548..3597	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18162 3549..3597 +
1691679260.2280893-UTR-H-elongata_contig18162:3548..3597	1691679260.2280893-UTR-H-elongata_contig18162:3548..3597	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18162 3549..3597 +
1622930047.2968848-UTR-H-elongata_contig18162:6168..7258	1622930047.2968848-UTR-H-elongata_contig18162:6168..7258	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18162 6169..7258 +
1691679260.2879505-UTR-H-elongata_contig18162:6168..7258	1691679260.2879505-UTR-H-elongata_contig18162:6168..7258	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig18162 6169..7258 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930047.2006972-CDS-H-elongata_contig18162:3597..3660	1622930047.2006972-CDS-H-elongata_contig18162:3597..3660	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18162 3598..3660 +
1691679260.2424362-CDS-H-elongata_contig18162:3597..3660	1691679260.2424362-CDS-H-elongata_contig18162:3597..3660	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18162 3598..3660 +
1622930047.2199948-CDS-H-elongata_contig18162:4331..4421	1622930047.2199948-CDS-H-elongata_contig18162:4331..4421	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18162 4332..4421 +
1691679260.2500958-CDS-H-elongata_contig18162:4331..4421	1691679260.2500958-CDS-H-elongata_contig18162:4331..4421	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18162 4332..4421 +
1622930047.239927-CDS-H-elongata_contig18162:5279..5424	1622930047.239927-CDS-H-elongata_contig18162:5279..5424	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18162 5280..5424 +
1691679260.26506-CDS-H-elongata_contig18162:5279..5424	1691679260.26506-CDS-H-elongata_contig18162:5279..5424	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18162 5280..5424 +
1622930047.2599716-CDS-H-elongata_contig18162:5704..5798	1622930047.2599716-CDS-H-elongata_contig18162:5704..5798	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18162 5705..5798 +
1691679260.2729287-CDS-H-elongata_contig18162:5704..5798	1691679260.2729287-CDS-H-elongata_contig18162:5704..5798	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18162 5705..5798 +
1622930047.2784839-CDS-H-elongata_contig18162:6029..6168	1622930047.2784839-CDS-H-elongata_contig18162:6029..6168	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18162 6030..6168 +
1691679260.2803895-CDS-H-elongata_contig18162:6029..6168	1691679260.2803895-CDS-H-elongata_contig18162:6029..6168	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig18162 6030..6168 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig18162:3549..7258+
coding sequence from alignment at H-elongata_contig18162:3549..7258+

protein sequence of mRNA_H-elongata_contig18162.4864.1

>prot_H-elongata_contig18162.4864.1 ID=prot_H-elongata_contig18162.4864.1|Name=mRNA_H-elongata_contig18162.4864.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=177bp
MGLLVGKRISFEQFVIYFIVQILGALAGAGIATTFLDSTGGGYNVVNDGF
IAVNAFGGEVLSTFLLVLTVFASSDGELGRHNAFVGPLVPWAIGMAVLLA
HLIMIPIDGCSINPARSFATAVTNNKWDDHWVFWVGPMVGGILATIVWET
ILRPEQPFDTNGAHQKPVEAVSQHKA*

mRNA from alignment at H-elongata_contig18162:3549..7258+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig18162.4864.1 ID=mRNA_H-elongata_contig18162.4864.1|Name=mRNA_H-elongata_contig18162.4864.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3710bp|location=Sequence derived from alignment at H-elongata_contig18162:3549..7258+ (Himanthalia elongata Himel1 dioecious)
CTACATCTTGGCTGACACCTCGGGCGCCCACCTCAACCCGGCTATTTCCA
TGGGACTCCTCGTGGGCAAGCGCATTTCCTTCGAGCAGTTCGTCATCTAC
TTCATTGTTCAGGTGACTTAATGTTTACCATTGTTCAGGGTGGCTTAATG
TTTACCCTGGAAAGTTAATGATTTCTGTAGGAGCATCTCGCGTGTACAAT
TTTACGCTATCGTTATTAATATAATAACCAGTTCCTCCACGTACCCAATT
ACTCGAAACGGCAAGAGTTTATTTTCACAGCTTGTTCTATCGCAGTGCCC
AACCTAGTGAGCATGATAGTATTGTTTTTAAAATTAGCGCTAGAACTTCT
GCCCCGTATGCCGGCTCCAAATTCGGCCTGACCCACGAGATGGGGAAGTC
TTGGGAATTGCAAAGATGTCTTATTATCCCGATCTGCTTTTCATCACTTT
CAAATCACTTGGCCTCCGGACACGTAGGACTGTAAGCGTTCGCTTGCATG
GGAAGAAGCGGGGGCAGGGTGGGGCGGAGGTATGTTGTATTACGGTATTT
TTGTTTTTATTTTTTGAATCTCTCATAAGCTGATGTCAAAATCCAGCTCG
TGGTCACAAGGTAGAGAATAACGTAATTCGGTCGCAAAACAAGTCAAGAC
CAGGATTAGTTAGCAGTCGTTGCTGTACATTCTCATTAGCTACGCCGGAT
ATCATCACGTAAATAAGCAATATGCAAGAGGGTCTAAACACGCTTGGAAG
TATACGTTTTTCCCCACTTTTCGGCTCGCGTAGATACTTGGTGCCTTGGC
GGGTGCGGGTATCGCTACCACCTTCTTGGACTCAACTGGCGGAGGCTACA
ACGTCGTCAATGATGGATTCATCGTGAGTTAATCAGACGAGATCCCTTCA
ACGATTGGTTCTGAAGCCGAAAGTCGCCGGTACTCCGTATTCTACGGATA
CCGTAGCGTTCCAGAATATATCGGAAAGCGTAATATATATATATATATAT
ATATATACATATATATATGCATAGTCTATATATGTACGGATGCTACGCAG
TACCGGCTAGATTACTGATGACATTATTGTGTAGAGGAATGGCTGTAACG
AAGCAAGGTTCGATTCATCCTCAGATTTCCACCAGAAGTTAAACGCTCTT
ATGCCCAGAGCTATCATCAACGTCCTACTTTATGAATGAGGCTACGTCGC
TTCCCATCTGACCATCATTCTTATCTAAACAAAACCCTTATGTATTTGAG
ATCAACGTGGGAAAAGGCTTCATATTTAATCGTTGGGTGGTCGACCTTTG
AGTAACTGACGTTAGTCGTAAAATGCAAAGACGAGGCACGCTAGAAGTAC
TAGCGTAGTGGACGACTGGTTCTACCCTACGCCGAACACAGGCACGAGGG
GTGTGCCACCTATGCATCTAACGTGTGCACTAGTTTTCTATTCATAAGTT
GGGATACCCATTCCTGTCGACCGTAGTGCCAACCCAGGGGTTCTCCAGAG
TTTTCTCTCCTTTTTGTTTGGATCGCTTCCTGTGACCATTCTCGGCAGTC
CAGGCTGTAAGGGTATTGGCAGCAACGTCGGAGTTGCTCAGCCTACAGAT
AACGCGTCTACGGTTCGGGGCTTAACAGAGTCCGATGGTAATGGCCGGAA
ACTTTATTGGTGTGTTGTATTGAAGTATAGTCAAATTGTTTCCCCCCCAT
TCTTTCTTGAATATTTCGTTCACGATTGCAGGCCGTTAATGCCTTCGGCG
GCGAGGTGCTGTCTACATTCCTCCTCGTCCTGACGGTTTTCGCCTCCAGT
GACGGAGAGCTCGGTCGCCATAATGCGTTTGTCGGCCCCCTCGTTCCTTG
GGCCATCGGTATGGCCGTCCTTCTGGGTGAGCTATTTTACCTTCGCAATC
ATCTTTCAACATATTTTGAATCACTTACGTGATAAGGTTGATTCGCTCTT
AATACCTCAAACCATTTTTTGCCTTTAAAGGCAGAGAATGCATCCGGCCG
GAGACGAGGGCCATCTGAATCAAACGCACTCATCGGGGTTCACGTTTCAT
GCTGGCAAAAGACACAAAGCGATAAATATAGAATGTTTTGAACATGTTCC
TTCTACCTGACCTCCCTACGCCTCTGCATCACCCCCTCGTGCGATCCCTG
TCGCAGCCCATCTGATCATGATCCCAATCGATGGCTGCTCCATAAACCCC
GCCCGTTCCTTTGCAACCGCTGTCACGAACAACAAGTGGGATGACCACTG
GTGAGCAATAGAAGCAGAGTCGAGCGAGCCTCCTATACTTCAAGGTAGCA
CGCTTGATTAGTTCCGCGTGGATGGTAGACTCTCAGCTACTTTGAGCGTG
ACTGGGTATCCCATTGGCGGCGTGCACTATGGTGTGTGGCGCGAGGAAGG
AACAACGTGGGTCCCTGGGTCGTTGGACACTTTTTACAGAACCCGCACCC
TCACCTGCTGCGTTTTGCATGGTTTATGCAGGGTGTTCTGGGTCGGGCCG
ATGGTTGGTGGTATTCTTGCCACCATCGTGTGGGAGACTATACTACGTCC
TGAACAGCCCTTTGACACCAATGGCGCCCATCAGAAACCTGTGGAGGCGG
TATCGCAGCATAAAGCTTGAGCTTTTGCATCCAATGTTTCGTCAGCAAAG
ACGCTTCTCCGATATTCATCGGACGATACTAACCATGACATGGCAGACTG
TAAGGAATTTGGTAAGGCAGCGTGAGCTTTGACAGCACGTTGGGCGTGTG
GCGAGGTGGAATTCCCTTTGTGCCAGTATTAAAGTGTATGATAAACGCAA
CGAATCTTGAAACGGATGTCAAGGGTTTGGGTTGTGGCTATATGCCTTAT
TCGGTGGCTACTCGACGACCAAATTGATACCCCTAATCGGATACATTATT
CTTTGCTATGTGGAATGAATCTTATATAATATGTTGCTTATGCAAGTTCA
AGCCCGAACTGGTTGCTATTGACGTGTTCCTGGATAGATTTAAGACACCT
CCAACGAGGTCAACTTTATGATGCACAGGGGGGATGGACGTATATTGCAT
TTTTGGTTTTGAGTATGGATGAGGATGTCGCTTGACGCTTTTCAAGTTTC
CCGTAAATAAGTTAAAGGCTCGTTCTATAGCTTAAGGATAGGAGGCGGCT
TTGTATATAAAGGCCAACCATGTCGTCGTAGGATATGTTCGCGGGAACAT
TGTCCTATTTCGAAGAATAAACTAGCGAACGAATTAGAAGGGACGGGTCA
AGTTATGTCCCGTTGAATATTTTTACGGTCGCGAGAAGACACAACTTGCA
TGGCCCCTGTTCACCGCTTAGCCTTGAAAGTCCCTTTTGTACGCGTAGGG
GGCTCCATTATTTTATTTCAGTTGAAAGGAGGGGGTGCCACTCTTACGAA
CTAAGAAATATATGAGAGAAACGACTCACGTGAAATAGTTAATACTTCGG
TTGTTATTTACGAATGAAGCAATATGTGCTGGGTAATGTTGGATGTCAAT
CATTTGACGTACCACCCACTGCTACCGCTCCTCCCTCTGCTACACTTAAA
GTTTTTGAATTAAATACCGCCGGACACTGAAAGGGTTAAATGTTACTCTT
CCCAAGTGGAATAGTCGCTGAAGCCGAATAATCCGGGCGTTTGGCATTGC
GGGGGACTGGAAAGCAATTGTGTTGAAGGCTGAGATTTGGGGTGAGATAG
TCGCGGAGGG

Coding sequence (CDS) from alignment at H-elongata_contig18162:3549..7258+

>mRNA_H-elongata_contig18162.4864.1 ID=mRNA_H-elongata_contig18162.4864.1|Name=mRNA_H-elongata_contig18162.4864.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1062bp|location=Sequence derived from alignment at H-elongata_contig18162:3549..7258+ (Himanthalia elongata Himel1 dioecious)
ATGGGACTCCTCGTGGGCAAGCGCATTTCCTTCGAGCAGTTCGTCATCTA
CTTCATTGTTCAGATGGGACTCCTCGTGGGCAAGCGCATTTCCTTCGAGC
AGTTCGTCATCTACTTCATTGTTCAGATACTTGGTGCCTTGGCGGGTGCG
GGTATCGCTACCACCTTCTTGGACTCAACTGGCGGAGGCTACAACGTCGT
CAATGATGGATTCATCATACTTGGTGCCTTGGCGGGTGCGGGTATCGCTA
CCACCTTCTTGGACTCAACTGGCGGAGGCTACAACGTCGTCAATGATGGA
TTCATCGCCGTTAATGCCTTCGGCGGCGAGGTGCTGTCTACATTCCTCCT
CGTCCTGACGGTTTTCGCCTCCAGTGACGGAGAGCTCGGTCGCCATAATG
CGTTTGTCGGCCCCCTCGTTCCTTGGGCCATCGGTATGGCCGTCCTTCTG
GGCCGTTAATGCCTTCGGCGGCGAGGTGCTGTCTACATTCCTCCTCGTCC
TGACGGTTTTCGCCTCCAGTGACGGAGAGCTCGGTCGCCATAATGCGTTT
GTCGGCCCCCTCGTTCCTTGGGCCATCGGTATGGCCGTCCTTCTGGCCCA
TCTGATCATGATCCCAATCGATGGCTGCTCCATAAACCCCGCCCGTTCCT
TTGCAACCGCTGTCACGAACAACAAGTGGGATGACCACTGCCCATCTGAT
CATGATCCCAATCGATGGCTGCTCCATAAACCCCGCCCGTTCCTTTGCAA
CCGCTGTCACGAACAACAAGTGGGATGACCACTGGGTGTTCTGGGTCGGG
CCGATGGTTGGTGGTATTCTTGCCACCATCGTGTGGGAGACTATACTACG
TCCTGAACAGCCCTTTGACACCAATGGCGCCCATCAGAAACCTGTGGAGG
CGGTATCGCAGCATAAAGCTTGAGGTGTTCTGGGTCGGGCCGATGGTTGG
TGGTATTCTTGCCACCATCGTGTGGGAGACTATACTACGTCCTGAACAGC
CCTTTGACACCAATGGCGCCCATCAGAAACCTGTGGAGGCGGTATCGCAG
CATAAAGCTTGA