mRNA_H-elongata_contig181587.4863.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181587.4863.1
Unique NamemRNA_H-elongata_contig181587.4863.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig181587.4863.1 vs. uniprot
Match: D8LMX2_ECTSI (Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMX2_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.830e-10
Identity = 35/52 (67.31%), Postives = 47/52 (90.38%), Query Frame = 1 
Query:    1 QAKRRALASTDGKLAAVAKARSAKDDEMKGLERSLVEVLVEQQKKLLALLSE 156
            +AKR+AL + DGKL  +A++R+ K++EMKGLER+LV+VLVEQQKKLL+LLSE
Sbjct: 2184 EAKRKALVAVDGKLGGLAESRAEKEEEMKGLERTLVQVLVEQQKKLLSLLSE 2235
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181587.4863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMX2_ECTSI3.830e-1067.31Plectin isoform 1 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181587contigH-elongata_contig181587:317..475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue6.7e-09
Seed eggNOG ortholog2880.D8LMX2
EggNOG OGs28KYD@1,2QTF4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930047.1201727-CDS-H-elongata_contig181587:316..4751622930047.1201727-CDS-H-elongata_contig181587:316..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181587 317..475 +
1691679260.2057662-CDS-H-elongata_contig181587:316..4751691679260.2057662-CDS-H-elongata_contig181587:316..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181587 317..475 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181587.4863.1prot_H-elongata_contig181587.4863.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181587 317..475 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181587.4863.1

>prot_H-elongata_contig181587.4863.1 ID=prot_H-elongata_contig181587.4863.1|Name=mRNA_H-elongata_contig181587.4863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
QAKRRALASTDGKLAAVAKARSAKDDEMKGLERSLVEVLVEQQKKLLALL
SEV
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mRNA from alignment at H-elongata_contig181587:317..475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181587.4863.1 ID=mRNA_H-elongata_contig181587.4863.1|Name=mRNA_H-elongata_contig181587.4863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig181587:317..475+ (Himanthalia elongata Himel1 dioecious)
CAGGCAAAGCGAAGAGCGTTAGCATCCACAGACGGGAAATTGGCGGCGGT
TGCCAAGGCACGGTCAGCGAAAGACGACGAGATGAAGGGTCTGGAGAGGA
GTCTCGTAGAAGTTTTGGTGGAGCAGCAGAAGAAACTTCTTGCACTGCTT
AGCGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig181587:317..475+

>mRNA_H-elongata_contig181587.4863.1 ID=mRNA_H-elongata_contig181587.4863.1|Name=mRNA_H-elongata_contig181587.4863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig181587:317..475+ (Himanthalia elongata Himel1 dioecious)
CAGGCAAAGCGAAGAGCGTTAGCATCCACAGACGGGAAATTGGCGGCGGT
TGCCAAGGCACGGTCAGCGAAAGACGACGAGATGAAGGGTCTGGAGAGGA
GTCTCGTAGAAGTTTTGGTGGAGCAGCAGAAGAAACTTCTTGCACTGCTT
AGCGAGGTACAGGCAAAGCGAAGAGCGTTAGCATCCACAGACGGGAAATT
GGCGGCGGTTGCCAAGGCACGGTCAGCGAAAGACGACGAGATGAAGGGTC
TGGAGAGGAGTCTCGTAGAAGTTTTGGTGGAGCAGCAGAAGAAACTTCTT
GCACTGCTTAGCGAGGTA
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