mRNA_H-elongata_contig181421.4856.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181421.4856.1
Unique NamemRNA_H-elongata_contig181421.4856.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig181421.4856.1 vs. uniprot
Match: A0A6H5KYW9_9PHAE (CULLIN_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW9_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.400e-24
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    4 SCVELFESMGMGTLDAYVADLEEPLLANTREHYARKSQEWIETDSTPDYMIKV 162
            SCVELFESMGMGTLD+YVADLEE LLANT++HYARKSQEWIETDSTPDYMIK 
Sbjct:  181 SCVELFESMGMGTLDSYVADLEEALLANTKDHYARKSQEWIETDSTPDYMIKA 233
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BLAST of mRNA_H-elongata_contig181421.4856.1 vs. uniprot
Match: A0A7S1B6G2_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6G2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.610e-20
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 RSCVELFESMGMGTLDAYVADLEEPLLANTREHYARKSQEWIETDSTPDYMIKV 162
            +SCVELFE+MGMGTLDAYVAD E+PLL NTRE+Y  + QEWI TDSTP+Y+IK 
Sbjct:  179 KSCVELFETMGMGTLDAYVADFEQPLLQNTREYYRLRRQEWIVTDSTPEYLIKA 232
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BLAST of mRNA_H-elongata_contig181421.4856.1 vs. uniprot
Match: A0A835YLK2_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK2_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.420e-19
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    4 SCVELFESMGMGTLDAYVADLEEPLLANTREHYARKSQEWIETDSTPDYMIKV 162
            +CV+LFESMGMGTL+AY AD EE +L NTRE+YARKSQ+W+E DSTPDY+IK 
Sbjct:  183 ACVDLFESMGMGTLEAYTADFEEAMLDNTREYYARKSQQWVEGDSTPDYLIKA 235
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BLAST of mRNA_H-elongata_contig181421.4856.1 vs. uniprot
Match: A0A7R9ZBG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZBG0_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 9.100e-19
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 RSCVELFESMGMGTLDAYVADLEEPLLANTREHYARKSQEWIETDSTPDYMIKV 162
            +S VEL+ESMGMGTLDAY ADLE PLL +TRE+YA+K QEWI +DSTPDY+IK 
Sbjct:  218 KSIVELYESMGMGTLDAYTADLEGPLLDSTREYYAKKRQEWIVSDSTPDYLIKA 271
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BLAST of mRNA_H-elongata_contig181421.4856.1 vs. uniprot
Match: A0A1Z5KSR7_FISSO (Cullin 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSR7_FISSO)

HSP 1 Score: 87.4 bits (215), Expect = 9.200e-19
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 RSCVELFESMGMGTLDAYVADLEEPLLANTREHYARKSQEWIETDSTPDYMIKVGG 168
            +S VEL+ESMGMG+L+AY ADLE+PLL +TREHYARK +EWI  DSTPDYMIK  G
Sbjct:  181 KSIVELYESMGMGSLEAYTADLEQPLLESTREHYARKREEWI-NDSTPDYMIKAEG 235
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BLAST of mRNA_H-elongata_contig181421.4856.1 vs. uniprot
Match: A0A7S4ILC2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4ILC2_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.260e-18
Identity = 39/54 (72.22%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 RSCVELFESMGMGTLDAYVADLEEPLLANTREHYARKSQEWIETDSTPDYMIKV 162
            +S +EL+ESMGMGTLDAY ADLE PLL +TRE+YA+K QEWI +DSTPDY+IK 
Sbjct:  184 KSIIELYESMGMGTLDAYTADLEGPLLDSTREYYAKKRQEWIVSDSTPDYLIKA 237
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BLAST of mRNA_H-elongata_contig181421.4856.1 vs. uniprot
Match: A0A7S1VSX6_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VSX6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.720e-18
Identity = 40/54 (74.07%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 RSCVELFESMGMGTLDAYVADLEEPLLANTREHYARKSQEWIETDSTPDYMIKV 162
            +S VELFESMGMG+L+AYVADLE PLL +TRE Y +K QEWI TDSTPDY+IK 
Sbjct:  179 KSIVELFESMGMGSLEAYVADLETPLLESTREFYGQKRQEWIATDSTPDYLIKA 232
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BLAST of mRNA_H-elongata_contig181421.4856.1 vs. uniprot
Match: A0A7S2UHW6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHW6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.720e-18
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 RSCVELFESMGMGTLDAYVADLEEPLLANTREHYARKSQEWIETDSTPDYMIKV 162
            +S VEL+ESMGMG+LDAY ADLE PLL +TR +Y +K QEWIETDSTPDY+IK 
Sbjct:  187 KSSVELYESMGMGSLDAYAADLEAPLLDSTRAYYVKKRQEWIETDSTPDYLIKA 240
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BLAST of mRNA_H-elongata_contig181421.4856.1 vs. uniprot
Match: A0A6V2KK72_9STRA (Hypothetical protein n=9 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6V2KK72_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.520e-17
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    1 RSCVELFESMGMGTLDAYVADLEEPLLANTREHYARKSQEWIETDSTPDYMIKV 162
            +S VEL+ESMGMG+LDAY +DLE PLL +TRE+YA+K +EWI +DSTPDY+IK 
Sbjct:  154 KSIVELYESMGMGSLDAYTSDLEGPLLDSTREYYAKKREEWIASDSTPDYLIKA 207
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BLAST of mRNA_H-elongata_contig181421.4856.1 vs. uniprot
Match: F0XVV7_AURAN (CULLIN_2 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XVV7_AURAN)

HSP 1 Score: 83.6 bits (205), Expect = 2.080e-17
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 RSCVELFESMGMGTLDAYVADLEEPLLANTREHYARKSQEWIETDSTPDYMIKV 162
            ++CVEL E+MGMG+LDAYV D E+ LL +T+E+YARKSQEW+ETD TP Y+ K 
Sbjct:  178 KNCVELLEAMGMGSLDAYVTDFEDQLLGSTKEYYARKSQEWVETDDTPTYLAKA 231
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181421.4856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYW9_9PHAE1.400e-2490.57CULLIN_2 domain-containing protein n=2 Tax=Ectocar... [more]
A0A7S1B6G2_9STRA7.610e-2074.07Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A835YLK2_9STRA1.420e-1973.58Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7R9ZBG0_9STRA9.100e-1974.07Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A1Z5KSR7_FISSO9.200e-1973.21Cullin 1 n=2 Tax=Fistulifera solaris TaxID=1519565... [more]
A0A7S4ILC2_9STRA1.260e-1872.22Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1VSX6_9STRA1.720e-1874.07Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A7S2UHW6_9STRA1.720e-1872.22Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A6V2KK72_9STRA1.520e-1768.52Hypothetical protein n=9 Tax=Lithodesmiaceae TaxID... [more]
F0XVV7_AURAN2.080e-1764.81CULLIN_2 domain-containing protein n=1 Tax=Aureoco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181421contigH-elongata_contig181421:438..605 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue8.5e-16
Seed eggNOG ortholog2880.D7FY17
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930046.3382351-CDS-H-elongata_contig181421:437..5781622930046.3382351-CDS-H-elongata_contig181421:437..578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181421 438..578 -
1691679259.9270058-CDS-H-elongata_contig181421:437..5781691679259.9270058-CDS-H-elongata_contig181421:437..578Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181421 438..578 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930046.360778-UTR-H-elongata_contig181421:578..6051622930046.360778-UTR-H-elongata_contig181421:578..605Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181421 579..605 -
1691679259.936523-UTR-H-elongata_contig181421:578..6051691679259.936523-UTR-H-elongata_contig181421:578..605Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181421 579..605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181421.4856.1prot_H-elongata_contig181421.4856.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181421 438..578 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181421.4856.1

>prot_H-elongata_contig181421.4856.1 ID=prot_H-elongata_contig181421.4856.1|Name=mRNA_H-elongata_contig181421.4856.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MGMGTLDAYVADLEEPLLANTREHYARKSQEWIETDSTPDYMIKVGG
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mRNA from alignment at H-elongata_contig181421:438..605-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181421.4856.1 ID=mRNA_H-elongata_contig181421.4856.1|Name=mRNA_H-elongata_contig181421.4856.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=168bp|location=Sequence derived from alignment at H-elongata_contig181421:438..605- (Himanthalia elongata Himel1 dioecious)
AGGTCATGCGTGGAGCTCTTCGAGTCTATGGGCATGGGGACGCTTGATGC
GTACGTCGCTGACCTAGAGGAGCCGCTGCTTGCGAACACGAGAGAGCACT
ACGCACGCAAGAGTCAGGAGTGGATTGAAACTGACTCGACGCCGGACTAC
ATGATTAAGGTAGGTGGA
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Coding sequence (CDS) from alignment at H-elongata_contig181421:438..605-

>mRNA_H-elongata_contig181421.4856.1 ID=mRNA_H-elongata_contig181421.4856.1|Name=mRNA_H-elongata_contig181421.4856.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig181421:438..605- (Himanthalia elongata Himel1 dioecious)
ATGGGCATGGGGACGCTTGATGCGTACGTCGCTGACCTAGAGGAGCCGCT
GCTTGCGAACACGAGAGAGCACTACGCACGCAAGAGTCAGGAGTGGATTG
AAACTGACTCGACGCCGGACTACATGATTAAGGTAGGTGGAATGGGCATG
GGGACGCTTGATGCGTACGTCGCTGACCTAGAGGAGCCGCTGCTTGCGAA
CACGAGAGAGCACTACGCACGCAAGAGTCAGGAGTGGATTGAAACTGACT
CGACGCCGGACTACATGATTAAGGTAGGTGGA
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