prot_H-elongata_contig18140.4855.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18140.4855.1
Unique Nameprot_H-elongata_contig18140.4855.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length362
Homology
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BLAST of mRNA_H-elongata_contig18140.4855.1 vs. uniprot
Match: A0A6H5LEH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEH4_9PHAE)

HSP 1 Score: 357 bits (917), Expect = 9.910e-118
Identity = 201/357 (56.30%), Postives = 241/357 (67.51%), Query Frame = 0 
Query:    9 EAVTEAWTAHEGAVTGIDTAGG-YGDLGGVSGVVTSGGDGCLRLFELAIGGE--TMSDGSPAINPYLSLRGQVAVHLDRASGVASTPRRCVTVGEDGAASLVDLRRLDGALPGGVVGRRGGGGSGGDCVVWKGRAKGALPLSGVTFQGESEEIFATVGCDPNGQLMVWDSRM-GNRPAHVLTGSGGRSSSGDKHAPYLSIASQPFSPEMFACGASTGEVLIFDVRAAGRERVVHEMQFQEYAGSGGGIWGLAFHPPKPRHLLTCMGTGALMRWFLPPLGRAAPSSGALGNGIAGHVQDFSSEGEGDASKWHGGRKLCELPSRSALVGVCYDEGADTVSSVSKLGHLIVAHAVKGLRL 361
            E+V EAW  HEGAVTG+D AGG +  LGGVSGVVTSGGDGCLRLFEL  G +     DGSP   P L L GQV  H DRA+GVA+T RR VTVGEDG AS+VDL+RL     G   G  GGG      +VW GR KGA+PLSGVTFQGESEE+FATVGC+P GQL+VWD+R  G+RP  V+ G+ G     +  APYL +ASQPF+PE+FACG STGEV+++DVR       +HE+Q Q+   + GG WG+ FHP  PRHL +C GTG L +W++PP G+A   +            D    G G      G R L ELPSRS LVGVCYDE ADT+++VSK GH++VAH V GLRL
Sbjct:  122 ESVAEAWAPHEGAVTGVDVAGGGFESLGGVSGVVTSGGDGCLRLFELTPGDDFDEDEDGSPGDGPSLGLVGQVPTHSDRATGVAATRRRAVTVGEDGVASVVDLQRLADDHGGSAGGGVGGG------LVWTGRTKGAMPLSGVTFQGESEEVFATVGCNPRGQLLVWDARTDGSRP--VVRGALGCIRGSE--APYLCVASQPFAPEVFACGVSTGEVIVWDVRTG---VPLHELQAQDETSAAGGSWGVTFHPRSPRHLFSCSGTGVLTKWYMPPEGQAHEPAAV----------DGGEWGGGGWESLRGARHLYELPSRSGLVGVCYDETADTIAAVSKHGHVVVAHGVAGLRL 455
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18140.4855.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LEH4_9PHAE9.910e-11856.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 4..289
e-value: 5.2E-18
score: 67.2
IPR037628Nucleoporin Nup43PANTHERPTHR22652NUCLEOPORIN NUP43coord: 16..277
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 16..346

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18140contigH-elongata_contig18140:130..6984 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18140.4855.1mRNA_H-elongata_contig18140.4855.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18140 130..6984 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18140.4855.1 ID=prot_H-elongata_contig18140.4855.1|Name=mRNA_H-elongata_contig18140.4855.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=362bp
KGQEAEEWEAVTEAWTAHEGAVTGIDTAGGYGDLGGVSGVVTSGGDGCLR
LFELAIGGETMSDGSPAINPYLSLRGQVAVHLDRASGVASTPRRCVTVGE
DGAASLVDLRRLDGALPGGVVGRRGGGGSGGDCVVWKGRAKGALPLSGVT
FQGESEEIFATVGCDPNGQLMVWDSRMGNRPAHVLTGSGGRSSSGDKHAP
YLSIASQPFSPEMFACGASTGEVLIFDVRAAGRERVVHEMQFQEYAGSGG
GIWGLAFHPPKPRHLLTCMGTGALMRWFLPPLGRAAPSSGALGNGIAGHV
QDFSSEGEGDASKWHGGRKLCELPSRSALVGVCYDEGADTVSSVSKLGHL
IVAHAVKGLRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR037628Nup43
IPR036322WD40_repeat_dom_sf