mRNA_H-elongata_contig181399.4854.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181399.4854.1
Unique NamemRNA_H-elongata_contig181399.4854.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig181399.4854.1 vs. uniprot
Match: D7FZ77_ECTSI (Inosine triphosphate pyrophosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ77_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 7.330e-56
Identity = 87/108 (80.56%), Postives = 95/108 (87.96%), Query Frame = 1 
Query:    4 QVNGPVMVEDTCLCFNALGGLPGPYIKWFLEGTGLEGLNKILEGFDDKSAYAQCVFAFSAGPGKEIKVFDGRTEGTIAPARGPPGFGWDPVFQPLGRDATYAEMLKQD 327
            QV GPVMVEDT LCFNALGGLPGPYIKWFL+GTG +GLN ILEGF DK+AYAQCVFAFSAGPGKE+K+FDGRT G+I P RGP  FGWDP+FQP GRD TYAEM K+D
Sbjct:  468 QVQGPVMVEDTGLCFNALGGLPGPYIKWFLDGTGHDGLNGILEGFQDKTAYAQCVFAFSAGPGKEVKIFDGRTAGSIVPPRGPTNFGWDPIFQPEGRDVTYAEMAKED 575
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BLAST of mRNA_H-elongata_contig181399.4854.1 vs. uniprot
Match: A0A7S3AYV9_9EUKA (Inosine triphosphate pyrophosphatase n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AYV9_9EUKA)

HSP 1 Score: 169 bits (429), Expect = 4.230e-51
Identity = 77/108 (71.30%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    4 QVNGPVMVEDTCLCFNALGGLPGPYIKWFLEGTGLEGLNKILEGFDDKSAYAQCVFAFSAGPGKEIKVFDGRTEGTIAPARGPPGFGWDPVFQPLGRDATYAEMLKQD 327
            QV GPVMVEDT LCFNALGGLPGPYIKWFLE TG EGLN +L  + DK+AYAQC+F FS GPG+ +  FDGRT G I PARGP  FGWDPVFQP G D TYA+M K +
Sbjct:   87 QVGGPVMVEDTSLCFNALGGLPGPYIKWFLEKTGHEGLNNLLAAYPDKTAYAQCIFGFSPGPGQPVVTFDGRTPGMIVPARGPTDFGWDPVFQPDGYDETYAQMDKAE 194
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BLAST of mRNA_H-elongata_contig181399.4854.1 vs. uniprot
Match: R1FN82_EMIHU (Inosine triphosphate pyrophosphatase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FN82_EMIHU)

HSP 1 Score: 167 bits (423), Expect = 1.630e-50
Identity = 78/108 (72.22%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    4 QVNGPVMVEDTCLCFNALGGLPGPYIKWFLEGTGLEGLNKILEGFDDKSAYAQCVFAFSAGPGKEIKVFDGRTEGTIAPARGPPGFGWDPVFQPLGRDATYAEMLKQD 327
            QV GPV VEDT LCFNALGGLPGPYIKWFLE TG EGLN +L  + DKSAYAQC+F FSAGPG+    FDGRT G I PARGP  FGWDPVFQP G   TYAEM K +
Sbjct:   62 QVGGPVFVEDTSLCFNALGGLPGPYIKWFLEKTGHEGLNNLLAAYPDKSAYAQCIFGFSAGPGQTPITFDGRTPGQIVPARGPTDFGWDPVFQPEGYSETYAEMDKAE 169
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BLAST of mRNA_H-elongata_contig181399.4854.1 vs. uniprot
Match: A0A087SD05_AUXPR (Inosine triphosphate pyrophosphatase n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SD05_AUXPR)

HSP 1 Score: 165 bits (417), Expect = 3.020e-50
Identity = 75/107 (70.09%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    1 LQVNGPVMVEDTCLCFNALGGLPGPYIKWFLEGTGLEGLNKILEGFDDKSAYAQCVFAFSAGPGKEIKVFDGRTEGTIAPARGPPGFGWDPVFQPLGRDATYAEMLK 321
            LQV GPV VEDTCLCFNA  GLPGPY+KWFLE  G +GLN++L GFDDK+ YA C FA+S GP  E  VF GRT+GTI PARGP  FGWDP+FQP G D TYAEM K
Sbjct:   24 LQVKGPVFVEDTCLCFNAYKGLPGPYVKWFLEKLGHDGLNRMLHGFDDKTGYALCTFAYSDGPDAEPHVFMGRTDGTIVPARGPATFGWDPIFQPSGFDQTYAEMEK 130
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BLAST of mRNA_H-elongata_contig181399.4854.1 vs. uniprot
Match: A0A6D2IHX8_9BRAS (Inosine triphosphate pyrophosphatase n=2 Tax=Brassicaceae TaxID=3700 RepID=A0A6D2IHX8_9BRAS)

HSP 1 Score: 166 bits (421), Expect = 3.180e-50
Identity = 77/109 (70.64%), Postives = 85/109 (77.98%), Query Frame = 1 
Query:    1 LQVNGPVMVEDTCLCFNALGGLPGPYIKWFLEGTGLEGLNKILEGFDDKSAYAQCVFAFSAGPGKEIKVFDGRTEGTIAPARGPPGFGWDPVFQPLGRDATYAEMLKQD 327
            LQVNGPV+VEDTCLCFNAL GLPGPYIKWFLE  G EGLN +L  ++DKSAYA C F+FS GPG E   F G+T G I PARGP  FGWDPVFQP G D TYAEM K++
Sbjct:   64 LQVNGPVLVEDTCLCFNALKGLPGPYIKWFLEKLGHEGLNNLLMAYEDKSAYALCAFSFSHGPGAEPLTFLGKTPGKIVPARGPTDFGWDPVFQPDGYDQTYAEMAKEE 172
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BLAST of mRNA_H-elongata_contig181399.4854.1 vs. uniprot
Match: UPI00053CA1B3 (inosine triphosphate pyrophosphatase n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053CA1B3)

HSP 1 Score: 166 bits (421), Expect = 3.180e-50
Identity = 75/109 (68.81%), Postives = 86/109 (78.90%), Query Frame = 1 
Query:    1 LQVNGPVMVEDTCLCFNALGGLPGPYIKWFLEGTGLEGLNKILEGFDDKSAYAQCVFAFSAGPGKEIKVFDGRTEGTIAPARGPPGFGWDPVFQPLGRDATYAEMLKQD 327
            +QVNGPV+VEDTCLCFNAL GLPGPYIKWFL+  G EGLN +L  ++DKSAYA CVF+FS GPG E   F G+T G I PARGP  FGWDP+FQP G D TYAEM K++
Sbjct:   66 IQVNGPVIVEDTCLCFNALKGLPGPYIKWFLQKLGHEGLNNLLMAYEDKSAYALCVFSFSLGPGAEPLTFSGKTPGKIVPARGPTDFGWDPIFQPDGYDQTYAEMPKEE 174
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BLAST of mRNA_H-elongata_contig181399.4854.1 vs. uniprot
Match: W1NQH4_AMBTC (Inosine triphosphate pyrophosphatase n=1 Tax=Amborella trichopoda TaxID=13333 RepID=W1NQH4_AMBTC)

HSP 1 Score: 164 bits (416), Expect = 4.860e-50
Identity = 71/108 (65.74%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:    4 QVNGPVMVEDTCLCFNALGGLPGPYIKWFLEGTGLEGLNKILEGFDDKSAYAQCVFAFSAGPGKEIKVFDGRTEGTIAPARGPPGFGWDPVFQPLGRDATYAEMLKQD 327
            +VNGPV+VEDTCLCFNAL GLPGPYIKWFL+  G EGLN +L+ +DDKSA+A C+F+ + GP  +   F G+TEG I PARGPP FGWDP+FQP G + TYAEMLK++
Sbjct:   28 EVNGPVLVEDTCLCFNALNGLPGPYIKWFLQKIGHEGLNNLLKAYDDKSAHALCIFSLALGPNTDPVTFFGKTEGKIVPARGPPDFGWDPIFQPDGYEQTYAEMLKEE 135
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BLAST of mRNA_H-elongata_contig181399.4854.1 vs. uniprot
Match: A0A7S2SGJ9_9STRA (Inosine triphosphate pyrophosphatase n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SGJ9_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.030e-49
Identity = 75/107 (70.09%), Postives = 85/107 (79.44%), Query Frame = 1 
Query:    4 QVNGPVMVEDTCLCFNALGGLPGPYIKWFLEGTGLEGLNKILEGFDDKSAYAQCVFAFSAGPGKEIKVFDGRTEGTIAPARGPPGFGWDPVFQPLGRDATYAEMLKQ 324
            +VNGPVMVEDT LCFNAL GLPG YIKWFLE TG +GLN +L  ++DKSAYAQC+FA++ GP  E+K F GRT G I PARGP  FGWDPVFQP G D TYAEM K+
Sbjct:   90 EVNGPVMVEDTSLCFNALNGLPGVYIKWFLEKTGHQGLNNLLAAYEDKSAYAQCIFAYTDGPSSEVKTFVGRTPGRIVPARGPTAFGWDPVFQPDGFDLTYAEMEKE 196
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BLAST of mRNA_H-elongata_contig181399.4854.1 vs. uniprot
Match: A0A2R6XAI5_MARPO (Inosine triphosphate pyrophosphatase n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XAI5_MARPO)

HSP 1 Score: 165 bits (417), Expect = 1.140e-49
Identity = 74/108 (68.52%), Postives = 85/108 (78.70%), Query Frame = 1 
Query:    4 QVNGPVMVEDTCLCFNALGGLPGPYIKWFLEGTGLEGLNKILEGFDDKSAYAQCVFAFSAGPGKEIKVFDGRTEGTIAPARGPPGFGWDPVFQPLGRDATYAEMLKQD 327
            +VNGPV+VEDTCLCFNAL GLPGPY+KWFL+ TG EGLN +L  ++DKSAYA CVF+ + GP  E   F GRTEG I PARGP  FGWDPVFQP G D T+AEM K+D
Sbjct:   65 EVNGPVLVEDTCLCFNALKGLPGPYVKWFLQKTGHEGLNNLLAAYEDKSAYALCVFSLALGPDAEPLTFSGRTEGKIVPARGPGDFGWDPVFQPDGYDLTFAEMKKED 172
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BLAST of mRNA_H-elongata_contig181399.4854.1 vs. uniprot
Match: A0A4P9WIX4_9FUNG (Inosine triphosphate pyrophosphatase n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WIX4_9FUNG)

HSP 1 Score: 164 bits (416), Expect = 1.310e-49
Identity = 70/103 (67.96%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    7 VNGPVMVEDTCLCFNALGGLPGPYIKWFLEGTGLEGLNKILEGFDDKSAYAQCVFAFSAGPGKEIKVFDGRTEGTIAPARGPPGFGWDPVFQPLGRDATYAEM 315
            +NGPV+ EDTCLCFNAL GLPGPYIKWF++  G +GLN++L GFDDKSA+A C FA+SAGPG+E  +F+GRT+G I PARGP  FGWDP+F+P G D TYAE+
Sbjct:   61 INGPVLTEDTCLCFNALKGLPGPYIKWFMKSVGHDGLNRMLAGFDDKSAFALCTFAYSAGPGEEPIIFEGRTDGRIVPARGPTTFGWDPIFEPEGFDLTYAEL 163
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181399.4854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ77_ECTSI7.330e-5680.56Inosine triphosphate pyrophosphatase n=2 Tax=Ectoc... [more]
A0A7S3AYV9_9EUKA4.230e-5171.30Inosine triphosphate pyrophosphatase n=1 Tax=Hapto... [more]
R1FN82_EMIHU1.630e-5072.22Inosine triphosphate pyrophosphatase n=2 Tax=Emili... [more]
A0A087SD05_AUXPR3.020e-5070.09Inosine triphosphate pyrophosphatase n=2 Tax=Auxen... [more]
A0A6D2IHX8_9BRAS3.180e-5070.64Inosine triphosphate pyrophosphatase n=2 Tax=Brass... [more]
UPI00053CA1B33.180e-5068.81inosine triphosphate pyrophosphatase n=1 Tax=Taren... [more]
W1NQH4_AMBTC4.860e-5065.74Inosine triphosphate pyrophosphatase n=1 Tax=Ambor... [more]
A0A7S2SGJ9_9STRA1.030e-4970.09Inosine triphosphate pyrophosphatase n=1 Tax=labyr... [more]
A0A2R6XAI5_MARPO1.140e-4968.52Inosine triphosphate pyrophosphatase n=1 Tax=March... [more]
A0A4P9WIX4_9FUNG1.310e-4967.96Inosine triphosphate pyrophosphatase n=1 Tax=Blytt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181399contigH-elongata_contig181399:1..1168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score188.3
Seed ortholog evalue1.7e-45
Seed eggNOG ortholog2880.D7FZ77
KEGG rclassRC00002
KEGG koko:K01519
KEGG ReactionR00426,R00720,R01855,R02100,R02720,R03531,R08243
KEGG Pathwayko00230,ko00983,ko01100,map00230,map00983,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009141,GO:0009143,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019438,GO:0019439,GO:0019637,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046434,GO:0046483,GO:0046700,GO:0047429,GO:0055086,GO:0071704,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576
EggNOG free text desc.NADH pyrophosphatase activity
EggNOG OGsCOG0127@1,KOG3222@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size327
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181399.4854.1prot_H-elongata_contig181399.4854.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181399 1..1147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930046.0157619-CDS-H-elongata_contig181399:0..1231622930046.0157619-CDS-H-elongata_contig181399:0..123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181399 1..123 -
1691679259.826794-CDS-H-elongata_contig181399:0..1231691679259.826794-CDS-H-elongata_contig181399:0..123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181399 1..123 -
1622930046.039904-CDS-H-elongata_contig181399:964..11471622930046.039904-CDS-H-elongata_contig181399:964..1147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181399 965..1147 -
1691679259.8467565-CDS-H-elongata_contig181399:964..11471691679259.8467565-CDS-H-elongata_contig181399:964..1147Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181399 965..1147 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930046.0533278-UTR-H-elongata_contig181399:1147..11681622930046.0533278-UTR-H-elongata_contig181399:1147..1168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181399 1148..1168 -
1691679259.85638-UTR-H-elongata_contig181399:1147..11681691679259.85638-UTR-H-elongata_contig181399:1147..1168Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181399 1148..1168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181399.4854.1

>prot_H-elongata_contig181399.4854.1 ID=prot_H-elongata_contig181399.4854.1|Name=mRNA_H-elongata_contig181399.4854.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MVEDTCLCFNALGGLPGPYIKWFLEGTGLEGLNKILEGFDDKSAYAQCVF
AFSAGPGKEIKVFDGRTEGTIAPARGPPGFGWDPVFQPLGRDATYAEMLK
QD
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mRNA from alignment at H-elongata_contig181399:1..1168-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181399.4854.1 ID=mRNA_H-elongata_contig181399.4854.1|Name=mRNA_H-elongata_contig181399.4854.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1168bp|location=Sequence derived from alignment at H-elongata_contig181399:1..1168- (Himanthalia elongata Himel1 dioecious)
CTCCAGGTGAACGGCCCGGTCATGGTCGAGGACACGTGTCTCTGCTTCAA
CGCCCTCGGCGGGCTGCCGGGCCCCTACATCAAGTGGTTCTTAGAGGGGA
CGGGACTCGAGGGGCTCAACAAGATTTTGGAGGGCTTCGACGATAAGTCG
GCCTACGCGCAGTGCGTCTTTGCCTTCTCCGCCGGACCCGGGAAGGAAAT
CAAGGTTTGGTGTTGCCGGCCAACTTGCCTACCTGGCGATTGATTTCGTC
GTTTGCTCCGCGACGCCTCCCAGATGATGATGTTTCTGGTGTCATCGAGA
CCGATTTGTATGTAGGTGCGTGCGGAAAACTCTGTAGAAAGGAGGAGTGA
GGTGGTGGGGTCGAGTCTTCTCCTTTTTCGCCCTTGTCGTCGTCGTCTTC
ATGTGCCTCGTTTGCAGCTTGCAGCTTGCAGCGTGCTATTTTTATCGCAC
CATAACACATGACCGCCCGTCTTGTGTATGTATGGTCGCACATTGGGCCT
GCGCGAATCAATGAGGCTCCTTCCGTCTCGCGACACTAATATGGTACTAT
AAAGTAGAGAAATAGAAGATATACTTATAATGGTATATATATATATATAC
ATATACCGGTTGATCTTTCTATGCTTTAGGTGATGACCACATATATGTAG
AGATATAATAGATGCCCGTATGACCTTCAACTATGCTATAGTATACTATA
TTATTGCAGTCGGTGAAAACCCTGTCACACGACTCAATCCATGAGACCGA
CGAAATTAACACGGGTACCCGCCTAAGCGAAGCCTCTAACGATAATGATG
TCGGTATAGATCTAGACGTTTTTAGACCTGCGTGCCTCAAGGAGAAGTAG
CTGTCACATTACCCCAGAGAACACACGAGTTGAACGTCAACGCCTTCTAA
CCTTTGCTGTCCTACAGCGGGAAACGCCTCCTTCTAGTTATTCTTCTTTC
TATCCCATCCTTCCACCTTTTCTACCTATCCTGACACTACTCTCATGCAT
CCATTCATGTCTTCTCTGACCCTCACCCCCCGTATTTTTCACTAGGTGTT
CGACGGAAGGACGGAAGGGACCATCGCGCCCGCCAGAGGTCCGCCCGGCT
TCGGGTGGGACCCGGTGTTCCAGCCGCTGGGCAGAGACGCCACCTATGCC
GAGATGCTCAAGCAAGAC
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Coding sequence (CDS) from alignment at H-elongata_contig181399:1..1168-

>mRNA_H-elongata_contig181399.4854.1 ID=mRNA_H-elongata_contig181399.4854.1|Name=mRNA_H-elongata_contig181399.4854.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig181399:1..1168- (Himanthalia elongata Himel1 dioecious)
ATGGTCGAGGACACGTGTCTCTGCTTCAACGCCCTCGGCGGGCTGCCGGG
CCCCTACATCAAGTGGTTCTTAGAGGGGACGGGACTCGAGGGGCTCAACA
AGATTTTGGAGGGCTTCGACGATAAGTCGGCCTACGCGCAGTGCGTCTTT
GCCTTCTCCGCCGGACCCGGGAAGGAAATCAAGATGGTCGAGGACACGTG
TCTCTGCTTCAACGCCCTCGGCGGGCTGCCGGGCCCCTACATCAAGTGGT
TCTTAGAGGGGACGGGACTCGAGGGGCTCAACAAGATTTTGGAGGGCTTC
GACGATAAGTCGGCCTACGCGCAGTGCGTCTTTGCCTTCTCCGCCGGACC
CGGGAAGGAAATCAAGGTGTTCGACGGAAGGACGGAAGGGACCATCGCGC
CCGCCAGAGGTCCGCCCGGCTTCGGGTGGGACCCGGTGTTCCAGCCGCTG
GGCAGAGACGCCACCTATGCCGAGATGCTCAAGCAAGACGTGTTCGACGG
AAGGACGGAAGGGACCATCGCGCCCGCCAGAGGTCCGCCCGGCTTCGGGT
GGGACCCGGTGTTCCAGCCGCTGGGCAGAGACGCCACCTATGCCGAGATG
CTCAAGCAAGAC
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