mRNA_H-elongata_contig181371.4853.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181371.4853.1
Unique NamemRNA_H-elongata_contig181371.4853.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig181371.4853.1 vs. uniprot
Match: A0A6A5PAZ3_LUPAL (Uncharacterized protein (Fragment) n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5PAZ3_LUPAL)

HSP 1 Score: 62.0 bits (149), Expect = 4.280e-9
Identity = 29/68 (42.65%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   61 WWVTYGKIGLPDLAKVAICTTSKVPASAGSERNWSLYEDVMGGRHARMGPERARKLVFVRANLRLQDK 264
            WW TYG    P+L ++A+C  S+  +++G ERNWS +E +   +  R+  ++   LVFVR NLRLQ K
Sbjct:  409 WWETYG-CRTPNLQRLAVCVLSQTCSASGCERNWSAFEHIHTNKRNRLEHKKLNDLVFVRYNLRLQQK 475          
BLAST of mRNA_H-elongata_contig181371.4853.1 vs. uniprot
Match: A0A2K3K1Y4_TRIPR (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K1Y4_TRIPR)

HSP 1 Score: 58.5 bits (140), Expect = 8.070e-9
Identity = 29/73 (39.73%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   61 WWVTYGKIGLPDLAKVAICTTSKVPASAGSERNWSLYEDVMGGRHARMGPERARKLVFVRANLRLQDKDPPKR 279
            WW  YG    P+L K+AI   S+  +++G ERNWS++E +   +  R+  ++   LVFVR NLRLQ+++  K+
Sbjct:    3 WWEMYGTEA-PNLKKLAIRILSQTCSASGCERNWSVFEHIHSKKRNRLEHQKLNDLVFVRYNLRLQNRNQKKQ 74          
BLAST of mRNA_H-elongata_contig181371.4853.1 vs. uniprot
Match: UPI00092ED33F (uncharacterized protein LOC109339874 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092ED33F)

HSP 1 Score: 60.8 bits (146), Expect = 1.060e-8
Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   52 PAGWWVTYGKIGLPDLAKVAICTTSKVPASAGSERNWSLYEDVMGGRHARMGPERARKLVFVRANLRLQDKD 267
            P  WW +YG  G P+L ++AI   S+  +S+G ERNWS++E +   +  R+  ++   LV+VR NLRLQ ++
Sbjct:  260 PDQWWESYG-CGAPNLQQLAIRILSQTYSSSGCERNWSVFEHIHSNKRNRLEHQKLNDLVYVRYNLRLQQRN 330          
BLAST of mRNA_H-elongata_contig181371.4853.1 vs. uniprot
Match: A0A2Z6NFM0_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NFM0_TRISU)

HSP 1 Score: 60.5 bits (145), Expect = 1.490e-8
Identity = 30/75 (40.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   52 PAGWWVTYGKIGLPDLAKVAICTTSKVPASAGSERNWSLYEDVMGGRHARMGPERARKLVFVRANLRLQDKDPPK 276
            P  WW  YG    P+L K+AI   S+  +++G ERNWS++E +   +  R+  ++   LVFVR NLRLQ+++  K
Sbjct:  510 PDQWWEMYGTEA-PNLKKLAIWILSQTCSASGCERNWSVFEHIQSKKRNRLEHQKLNDLVFVRYNLRLQNRNKKK 583          
BLAST of mRNA_H-elongata_contig181371.4853.1 vs. uniprot
Match: A0A6N2KDR5_SALVM (Uncharacterized protein n=1 Tax=Salix viminalis TaxID=40686 RepID=A0A6N2KDR5_SALVM)

HSP 1 Score: 60.5 bits (145), Expect = 1.510e-8
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1
Query:    1 TGKFKGHMFLPYAQNMSPAGWWVTYGKIGLPDLAKVAICTTSKVPASAGSERNWSLYEDVMGGRHARMGPERARKLVFVRANLRLQDKDPPK 276
            TG F   + +   + ++P  WW  +G     +L K AI   S+  ++ G ERNWS++E +   R  R+  +R   LVFVR NLR+Q ++  K
Sbjct:  512 TGDFGMALAIHQREKLNPVAWWEQFGN-DTQELQKFAIRVLSQCCSATGCERNWSVFEFIHSKRRNRLEHKRLNDLVFVRYNLRIQQRNLSK 602          
BLAST of mRNA_H-elongata_contig181371.4853.1 vs. uniprot
Match: A0A6A5MXA4_LUPAL (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5MXA4_LUPAL)

HSP 1 Score: 58.5 bits (140), Expect = 1.890e-8
Identity = 28/68 (41.18%), Postives = 43/68 (63.24%), Query Frame = 1
Query:   61 WWVTYGKIGLPDLAKVAICTTSKVPASAGSERNWSLYEDVMGGRHARMGPERARKLVFVRANLRLQDK 264
            WW TYG    P+L K+A+   S+  +++G ERNWS++E +   +  R+  ++   LVFVR NLRLQ +
Sbjct:    5 WWETYG-CRTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQR 71          
BLAST of mRNA_H-elongata_contig181371.4853.1 vs. uniprot
Match: A0A6A5PAT6_LUPAL (Uncharacterized protein (Fragment) n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5PAT6_LUPAL)

HSP 1 Score: 60.1 bits (144), Expect = 2.040e-8
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1
Query:   61 WWVTYGKIGLPDLAKVAICTTSKVPASAGSERNWSLYEDVMGGRHARMGPERARKLVFVRANLRLQDK 264
            WW TYG   L +L K+A+C  S+  +++G ERNWS++E +   +  R+  ++   LVFVR NLRLQ +
Sbjct:  417 WWETYGCRTL-NLQKLAVCVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKFNDLVFVRYNLRLQQR 483          
BLAST of mRNA_H-elongata_contig181371.4853.1 vs. uniprot
Match: UPI00092EBF14 (uncharacterized protein LOC109333050 n=2 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092EBF14)

HSP 1 Score: 59.7 bits (143), Expect = 2.140e-8
Identity = 28/72 (38.89%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   52 PAGWWVTYGKIGLPDLAKVAICTTSKVPASAGSERNWSLYEDVMGGRHARMGPERARKLVFVRANLRLQDKD 267
            P  WW +YG  G P+L ++AI   S+  +++G ERNWS++E +   +  R+  ++   LV+VR NLRLQ ++
Sbjct:  119 PDQWWESYG-CGAPNLQQLAIRILSQTCSASGCERNWSVFEHIHSNKRNRLEHQKLNDLVYVRYNLRLQQRN 189          
BLAST of mRNA_H-elongata_contig181371.4853.1 vs. uniprot
Match: A0A6A5M7K7_LUPAL (Phosphopyruvate hydratase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5M7K7_LUPAL)

HSP 1 Score: 59.7 bits (143), Expect = 2.840e-8
Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 1
Query:   52 PAGWWVTYGKIGLPDLAKVAICTTSKVPASAGSERNWSLYEDVMGGRHARMGPERARKLVFVRANLRLQDK 264
            P  WW TYG    P+L K+A+   S+  +++G ERNWS++E +   +  R+  ++   LVFVR NLRLQ +
Sbjct:  676 PDQWWETYG-CRTPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQR 745          
BLAST of mRNA_H-elongata_contig181371.4853.1 vs. uniprot
Match: UPI00092F4EA0 (uncharacterized protein LOC109333975 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F4EA0)

HSP 1 Score: 58.9 bits (141), Expect = 4.950e-8
Identity = 28/69 (40.58%), Postives = 44/69 (63.77%), Query Frame = 1
Query:   61 WWVTYGKIGLPDLAKVAICTTSKVPASAGSERNWSLYEDVMGGRHARMGPERARKLVFVRANLRLQDKD 267
            WW TYG    P+L K+A+   S+  +++G ERNWS++E +   +  R+  ++   LVFVR NLRLQ ++
Sbjct:  249 WWETYG-CRAPNLQKLAVRVLSQTCSASGCERNWSVFEHIHTNKRNRLEHQKLNDLVFVRYNLRLQQRN 316          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181371.4853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6A5PAZ3_LUPAL4.280e-942.65Uncharacterized protein (Fragment) n=1 Tax=Lupinus... [more]
A0A2K3K1Y4_TRIPR8.070e-939.73Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI00092ED33F1.060e-840.28uncharacterized protein LOC109339874 n=1 Tax=Lupin... [more]
A0A2Z6NFM0_TRISU1.490e-840.00Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A6N2KDR5_SALVM1.510e-834.78Uncharacterized protein n=1 Tax=Salix viminalis Ta... [more]
A0A6A5MXA4_LUPAL1.890e-841.18Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lu... [more]
A0A6A5PAT6_LUPAL2.040e-842.65Uncharacterized protein (Fragment) n=1 Tax=Lupinus... [more]
UPI00092EBF142.140e-838.89uncharacterized protein LOC109333050 n=2 Tax=Lupin... [more]
A0A6A5M7K7_LUPAL2.840e-840.85Phosphopyruvate hydratase n=1 Tax=Lupinus albus Ta... [more]
UPI00092F4EA04.950e-840.58uncharacterized protein LOC109333975 n=1 Tax=Lupin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181371contigH-elongata_contig181371:211..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue7.4e-08
Seed eggNOG ortholog90675.XP_010490018.1
EggNOG OGs2C7QK@1,2QRQU@2759,37TNR@33090
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size273
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930045.8787627-CDS-H-elongata_contig181371:210..4831622930045.8787627-CDS-H-elongata_contig181371:210..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181371 211..483 -
1691679259.784158-CDS-H-elongata_contig181371:210..4831691679259.784158-CDS-H-elongata_contig181371:210..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181371 211..483 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930045.9193473-UTR-H-elongata_contig181371:483..5041622930045.9193473-UTR-H-elongata_contig181371:483..504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181371 484..504 -
1691679259.806329-UTR-H-elongata_contig181371:483..5041691679259.806329-UTR-H-elongata_contig181371:483..504Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181371 484..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181371.4853.1prot_H-elongata_contig181371.4853.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181371 211..483 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181371.4853.1

>prot_H-elongata_contig181371.4853.1 ID=prot_H-elongata_contig181371.4853.1|Name=mRNA_H-elongata_contig181371.4853.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
MFLPYAQNMSPAGWWVTYGKIGLPDLAKVAICTTSKVPASAGSERNWSLY
EDVMGGRHARMGPERARKLVFVRANLRLQDKDPPKRLFIE*
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mRNA from alignment at H-elongata_contig181371:211..504-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181371.4853.1 ID=mRNA_H-elongata_contig181371.4853.1|Name=mRNA_H-elongata_contig181371.4853.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig181371:211..504- (Himanthalia elongata Himel1 dioecious)
ACCGGCAAGTTTAAGGGCCACATGTTCTTACCGTACGCCCAGAACATGTC CCCCGCAGGCTGGTGGGTAACGTACGGAAAGATCGGCCTCCCGGACTTGG CCAAAGTAGCCATTTGCACGACTTCAAAGGTACCTGCATCGGCAGGATCG GAGCGCAATTGGAGTCTGTACGAAGATGTCATGGGCGGAAGGCACGCACG AATGGGCCCCGAGCGTGCCAGGAAGTTGGTGTTCGTGAGGGCTAACCTGA GGCTGCAGGATAAAGACCCACCCAAGCGGTTGTTCATTGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig181371:211..504-

>mRNA_H-elongata_contig181371.4853.1 ID=mRNA_H-elongata_contig181371.4853.1|Name=mRNA_H-elongata_contig181371.4853.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig181371:211..504- (Himanthalia elongata Himel1 dioecious)
ATGTTCTTACCGTACGCCCAGAACATGTCCCCCGCAGGCTGGTGGGTAAC
GTACGGAAAGATCGGCCTCCCGGACTTGGCCAAAGTAGCCATTTGCACGA
CTTCAAAGGTACCTGCATCGGCAGGATCGGAGCGCAATTGGAGTCTGTAC
GAAGATGTCATGGGCGGAAGGCACGCACGAATGGGCCCCGAGCGTGCCAG
GAAGTTGGTGTTCGTGAGGGCTAACCTGAGGCTGCAGGATAAAGACCCAC
CCAAGCGGTTGTTCATTGAGTAGATGTTCTTACCGTACGCCCAGAACATG
TCCCCCGCAGGCTGGTGGGTAACGTACGGAAAGATCGGCCTCCCGGACTT
GGCCAAAGTAGCCATTTGCACGACTTCAAAGGTACCTGCATCGGCAGGAT
CGGAGCGCAATTGGAGTCTGTACGAAGATGTCATGGGCGGAAGGCACGCA
CGAATGGGCCCCGAGCGTGCCAGGAAGTTGGTGTTCGTGAGGGCTAACCT
GAGGCTGCAGGATAAAGACCCACCCAAGCGGTTGTTCATTGAGTAG
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