mRNA_H-elongata_contig181357.4851.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181357.4851.1
Unique NamemRNA_H-elongata_contig181357.4851.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: D8LG46_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG46_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 2.610e-45
Identity = 81/100 (81.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query:    1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAILQ 300
            ACV FYRDALL+EDFAM+NYTAVIKLLKKRDKLAG SDQ+ FM +V A QPFAMYPGVA+RV QVE+IFR+IE MCFLRTG GMKSVMK ELTVVEA +Q
Sbjct:  281 ACVNFYRDALLVEDFAMLNYTAVIKLLKKRDKLAGTSDQRPFMAEVMADQPFAMYPGVAKRVVQVEQIFRDIEHMCFLRTGEGMKSVMKNELTVVEAFMQ 380          
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A6H5JX04_9PHAE (SPX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX04_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.490e-20
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAM 162
            ACV FYRDALL+EDFAM+NYTAVIKLLKKRDKLAG SDQ+ FM +V A QPFAM
Sbjct:  144 ACVNFYRDALLVEDFAMLNYTAVIKLLKKRDKLAGTSDQRPFMAEVMANQPFAM 197          
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: D7G279_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G279_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.330e-15
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAIL 297
            ACVK Y+D LLLE+FA++NY    K+LKK DKL G   ++ FM  V    PF  YP V + ++ VE +F+ IE +      AG +  ++ E   ++ +L
Sbjct:  118 ACVKLYKDLLLLENFAIMNYCGFSKILKKHDKLTGFRTRESFMKNVVKNAPFVQYPKVIKMLSAVEALFKNIESLPSASAEAGTRVPLREEQLFIDTML 216          
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A6H5L5H8_9PHAE (SPX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H8_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.390e-15
Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 1
Query:    1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAIL 297
            ACVK Y+D LLLE+FA++NY    K+LKK DKL G   ++ FM  V    PF  YP V + ++ VE +F+ IE +      AG +  ++ E   ++ +L
Sbjct:   38 ACVKLYKDLLLLENFAIMNYCGFSKILKKHDKLTGFRTRESFMKNVVNNAPFVQYPKVIKMLSAVEALFKNIESLPSASAEAGTRVPLREEQLFIDTML 136          
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A6H5K0R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0R8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.620e-15
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1
Query:  163 YPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAILQ 300
            YPGVA+RV QVE+IFR+IE MCFLRTG GMKSVMK ELTVVEA +Q
Sbjct:   12 YPGVAKRVVQVEQIFRDIEHMCFLRTGEGMKSVMKNELTVVEAFIQ 57          
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A835Z5J1_9STRA (SPX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.040e-12
Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1
Query:    1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQV-RAAQPFAMYPGVAERVAQVEEIFREIE 219
            ACV+ Y+D LLLE+FA++NYTA  K+LKK DKL G   ++ +M  V      F  YP V E +  VEE+FR I+
Sbjct:  125 ACVRLYKDLLLLENFAIMNYTAFSKILKKHDKLTGFCTRERYMKNVVNMTTSFTHYPRVLEMLEDVEELFRGIQ 198          
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A8J2SU39_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SU39_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.420e-12
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREI 216
            ACV +YRD LLLE++A++NY    K+LKK DK  G + +  FM    A QPF  YP + E + + E+++R+I
Sbjct:  122 ACVTYYRDLLLLENYAIMNYCGFSKILKKHDKQTGFTTRTQFMRVCVAPQPFTRYPRLMEMIREAEDLYRDI 193          
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A4D9D3X8_9STRA (SPX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3X8_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.620e-12
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAI 294
            AC+  Y+D LLLE+FA++NY A  K LKK DK      +  FM  V   QPF  YP + E + ++EEIF+EI+ +     G   + + + E   +EAI
Sbjct:  131 ACISLYKDLLLLENFAVMNYCACSKALKKHDKTVVLDTRSRFMRNVVNQQPFTHYPRLLEMLQEMEEIFKEIDAL----QGDKARPLEEEERLFLEAI 224          
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: W7TGL0_9STRA (SPX domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGL0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.600e-12
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1
Query:    1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAI 294
            AC+  Y+D LLLE+FA++NY A  K LKK DK      +  FM  V   QPF  YP + E + ++EEIF+EI+ +     G   + + + E   +EAI
Sbjct:  131 ACISLYKDLLLLENFAVMNYCACSKALKKHDKTVVLDTRSRFMRNVVNQQPFTHYPRLLEMLQEMEEIFKEIDAL----QGDKARPLEEEERLFLEAI 224          
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A1V9ZFV0_9STRA (SPX domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFV0_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 6.260e-11
Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1
Query:    1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFRE 213
            ACV  +++ LLLE+FA++NY+ + K+LKK DK  G + +  F++QV   QPFA Y  +   + +VE IF +
Sbjct:  125 ACVALFKEMLLLENFALINYSGISKILKKHDKWTGYNTRTKFVEQVLNKQPFATYSQLLTMIHRVETIFMD 195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG46_ECTSI2.610e-4581.00SPX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JX04_9PHAE1.490e-2081.48SPX domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G279_ECTSI1.330e-1539.39SPX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L5H8_9PHAE1.390e-1539.39SPX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K0R8_9PHAE5.620e-1580.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z5J1_9STRA1.040e-1248.65SPX domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A8J2SU39_9STRA1.420e-1244.44Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A4D9D3X8_9STRA3.620e-1239.80SPX domain-containing protein n=1 Tax=Nannochlorop... [more]
W7TGL0_9STRA4.600e-1239.80SPX domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A1V9ZFV0_9STRA6.260e-1142.25SPX domain-containing protein n=1 Tax=Thraustothec... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181357contigH-elongata_contig181357:171..885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.9
Seed ortholog evalue7.6e-38
Seed eggNOG ortholog2880.D8LG46
EggNOG free text desc.cellular response to phosphate starvation
EggNOG OGsCOG5036@1,KOG1161@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSPX, N-terminal
Ec32 orthologEc-11_001980.1
Exons2
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930045.6298642-CDS-H-elongata_contig181357:170..3091622930045.6298642-CDS-H-elongata_contig181357:170..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181357 171..309 -
1691679259.6708543-CDS-H-elongata_contig181357:170..3091691679259.6708543-CDS-H-elongata_contig181357:170..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181357 171..309 -
1622930045.6480498-CDS-H-elongata_contig181357:724..8851622930045.6480498-CDS-H-elongata_contig181357:724..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181357 725..885 -
1691679259.6916053-CDS-H-elongata_contig181357:724..8851691679259.6916053-CDS-H-elongata_contig181357:724..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181357 725..885 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181357.4851.1prot_H-elongata_contig181357.4851.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181357 171..885 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181357.4851.1

>prot_H-elongata_contig181357.4851.1 ID=prot_H-elongata_contig181357.4851.1|Name=mRNA_H-elongata_contig181357.4851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQ
PFAMYPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAILQ
back to top

mRNA from alignment at H-elongata_contig181357:171..885-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181357.4851.1 ID=mRNA_H-elongata_contig181357.4851.1|Name=mRNA_H-elongata_contig181357.4851.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=715bp|location=Sequence derived from alignment at H-elongata_contig181357:171..885- (Himanthalia elongata Himel1 dioecious)
GCGTGCGTGAAGTTTTACCGCGACGCCCTGCTTCTGGAGGACTTCGCGAT GGTGAACTACACCGCGGTGATCAAGCTCCTCAAGAAGAGAGACAAGCTCG CGGGCGGGTCGGACCAAAAAGTGTTTATGGACCAGGTCAGGGCGGCGCAA CCCTTCGCCATGTGAGAAAGATAGAGAGAAAAAAAAAATCGAAGAAAGAC GACTTGGTACCACAGAACAAATTATTCGCTAGGCTCGAGAGTCGGAGGGG AGGCTTTGTTTACTCTTCAGCTGTCATGCACACACACACACACACACATA CCGCCCACACTTGTCCACGTTTTTATTTTTATATCATGTATCTTGTCTTT AGTTTTTTTGTTCACACCACATCATTAGCATAGTAGATTAGTAGTATTAG TATTAGTAGAATGGACAAAAGACAAATATGCGAACAAAACCAACGAATGG ACAAAAAGAGGACACTGTCCGCTTTCGCTTTCACAGTTATACACGAATCG CCCTGCGACTAAACGCTGCATCCGTCGAGATCACCAAGCCGAGTGAGTGC CTCTGCTGCTGTTTTCGCGGCGGCAGGTACCCGGGCGTGGCGGAGAGGGT GGCCCAGGTGGAGGAAATCTTCCGCGAAATCGAAGACATGTGCTTCTTGC GCACCGGCGCGGGCATGAAATCGGTCATGAAGACGGAGCTCACGGTCGTG GAGGCCATCCTGCAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig181357:171..885-

>mRNA_H-elongata_contig181357.4851.1 ID=mRNA_H-elongata_contig181357.4851.1|Name=mRNA_H-elongata_contig181357.4851.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig181357:171..885- (Himanthalia elongata Himel1 dioecious)
GCGTGCGTGAAGTTTTACCGCGACGCCCTGCTTCTGGAGGACTTCGCGAT
GGTGAACTACACCGCGGTGATCAAGCTCCTCAAGAAGAGAGACAAGCTCG
CGGGCGGGTCGGACCAAAAAGTGTTTATGGACCAGGTCAGGGCGGCGCAA
CCCTTCGCCATGCGTGCGTGAAGTTTTACCGCGACGCCCTGCTTCTGGAG
GACTTCGCGATGGTGAACTACACCGCGGTGATCAAGCTCCTCAAGAAGAG
AGACAAGCTCGCGGGCGGGTCGGACCAAAAAGTGTTTATGGACCAGGTCA
GGGCGGCGCAACCCTTCGCCATGTACCCGGGCGTGGCGGAGAGGGTGGCC
CAGGTGGAGGAAATCTTCCGCGAAATCGAAGACATGTGCTTCTTGCGCAC
CGGCGCGGGCATGAAATCGGTCATGAAGACGGAGCTCACGGTCGTGGAGG
CCATCCTGCAGGTACCCGGGCGTGGCGGAGAGGGTGGCCCAGGTGGAGGA
AATCTTCCGCGAAATCGAAGACATGTGCTTCTTGCGCACCGGCGCGGGCA
TGAAATCGGTCATGAAGACGGAGCTCACGGTCGTGGAGGCCATCCTGCAG
back to top