mRNA_H-elongata_contig181357.4851.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: D8LG46_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG46_ECTSI) HSP 1 Score: 164 bits (415), Expect = 2.610e-45 Identity = 81/100 (81.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query: 1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAILQ 300
ACV FYRDALL+EDFAM+NYTAVIKLLKKRDKLAG SDQ+ FM +V A QPFAMYPGVA+RV QVE+IFR+IE MCFLRTG GMKSVMK ELTVVEA +Q
Sbjct: 281 ACVNFYRDALLVEDFAMLNYTAVIKLLKKRDKLAGTSDQRPFMAEVMADQPFAMYPGVAKRVVQVEQIFRDIEHMCFLRTGEGMKSVMKNELTVVEAFMQ 380
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A6H5JX04_9PHAE (SPX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX04_9PHAE) HSP 1 Score: 90.5 bits (223), Expect = 1.490e-20 Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1
Query: 1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAM 162
ACV FYRDALL+EDFAM+NYTAVIKLLKKRDKLAG SDQ+ FM +V A QPFAM
Sbjct: 144 ACVNFYRDALLVEDFAMLNYTAVIKLLKKRDKLAGTSDQRPFMAEVMANQPFAM 197
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: D7G279_ECTSI (SPX domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G279_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 1.330e-15 Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 1
Query: 1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAIL 297
ACVK Y+D LLLE+FA++NY K+LKK DKL G ++ FM V PF YP V + ++ VE +F+ IE + AG + ++ E ++ +L
Sbjct: 118 ACVKLYKDLLLLENFAIMNYCGFSKILKKHDKLTGFRTRESFMKNVVKNAPFVQYPKVIKMLSAVEALFKNIESLPSASAEAGTRVPLREEQLFIDTML 216
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A6H5L5H8_9PHAE (SPX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H8_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 1.390e-15 Identity = 39/99 (39.39%), Postives = 58/99 (58.59%), Query Frame = 1
Query: 1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAIL 297
ACVK Y+D LLLE+FA++NY K+LKK DKL G ++ FM V PF YP V + ++ VE +F+ IE + AG + ++ E ++ +L
Sbjct: 38 ACVKLYKDLLLLENFAIMNYCGFSKILKKHDKLTGFRTRESFMKNVVNNAPFVQYPKVIKMLSAVEALFKNIESLPSASAEAGTRVPLREEQLFIDTML 136
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A6H5K0R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0R8_9PHAE) HSP 1 Score: 78.6 bits (192), Expect = 5.620e-15 Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1
Query: 163 YPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAILQ 300
YPGVA+RV QVE+IFR+IE MCFLRTG GMKSVMK ELTVVEA +Q
Sbjct: 12 YPGVAKRVVQVEQIFRDIEHMCFLRTGEGMKSVMKNELTVVEAFIQ 57
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A835Z5J1_9STRA (SPX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J1_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.040e-12 Identity = 36/74 (48.65%), Postives = 48/74 (64.86%), Query Frame = 1
Query: 1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQV-RAAQPFAMYPGVAERVAQVEEIFREIE 219
ACV+ Y+D LLLE+FA++NYTA K+LKK DKL G ++ +M V F YP V E + VEE+FR I+
Sbjct: 125 ACVRLYKDLLLLENFAIMNYTAFSKILKKHDKLTGFCTRERYMKNVVNMTTSFTHYPRVLEMLEDVEELFRGIQ 198
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A8J2SU39_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SU39_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.420e-12 Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 1
Query: 1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREI 216
ACV +YRD LLLE++A++NY K+LKK DK G + + FM A QPF YP + E + + E+++R+I
Sbjct: 122 ACVTYYRDLLLLENYAIMNYCGFSKILKKHDKQTGFTTRTQFMRVCVAPQPFTRYPRLMEMIREAEDLYRDI 193
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A4D9D3X8_9STRA (SPX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D3X8_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 3.620e-12 Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAI 294
AC+ Y+D LLLE+FA++NY A K LKK DK + FM V QPF YP + E + ++EEIF+EI+ + G + + + E +EAI
Sbjct: 131 ACISLYKDLLLLENFAVMNYCACSKALKKHDKTVVLDTRSRFMRNVVNQQPFTHYPRLLEMLQEMEEIFKEIDAL----QGDKARPLEEEERLFLEAI 224
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: W7TGL0_9STRA (SPX domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGL0_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 4.600e-12 Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFREIEDMCFLRTGAGMKSVMKTELTVVEAI 294
AC+ Y+D LLLE+FA++NY A K LKK DK + FM V QPF YP + E + ++EEIF+EI+ + G + + + E +EAI
Sbjct: 131 ACISLYKDLLLLENFAVMNYCACSKALKKHDKTVVLDTRSRFMRNVVNQQPFTHYPRLLEMLQEMEEIFKEIDAL----QGDKARPLEEEERLFLEAI 224
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Match: A0A1V9ZFV0_9STRA (SPX domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFV0_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 6.260e-11 Identity = 30/71 (42.25%), Postives = 47/71 (66.20%), Query Frame = 1
Query: 1 ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQPFAMYPGVAERVAQVEEIFRE 213
ACV +++ LLLE+FA++NY+ + K+LKK DK G + + F++QV QPFA Y + + +VE IF +
Sbjct: 125 ACVALFKEMLLLENFALINYSGISKILKKHDKWTGYNTRTKFVEQVLNKQPFATYSQLLTMIHRVETIFMD 195 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181357.4851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig181357.4851.1 >prot_H-elongata_contig181357.4851.1 ID=prot_H-elongata_contig181357.4851.1|Name=mRNA_H-elongata_contig181357.4851.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp ACVKFYRDALLLEDFAMVNYTAVIKLLKKRDKLAGGSDQKVFMDQVRAAQback to top mRNA from alignment at H-elongata_contig181357:171..885- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig181357.4851.1 ID=mRNA_H-elongata_contig181357.4851.1|Name=mRNA_H-elongata_contig181357.4851.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=715bp|location=Sequence derived from alignment at H-elongata_contig181357:171..885- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig181357:171..885- >mRNA_H-elongata_contig181357.4851.1 ID=mRNA_H-elongata_contig181357.4851.1|Name=mRNA_H-elongata_contig181357.4851.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig181357:171..885- (Himanthalia elongata Himel1 dioecious)back to top |