mRNA_H-elongata_contig18131.4849.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18131.4849.1
Unique NamemRNA_H-elongata_contig18131.4849.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18131.4849.1 vs. uniprot
Match: A0A6H5KV47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV47_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 2.470e-67
Identity = 111/204 (54.41%), Postives = 152/204 (74.51%), Query Frame = 3 
Query:   12 DTPRSNVRPKDAAISCSYLWALALLVGGITEFIVGAVLFSEWEGLGAFWVGAIAIGAGIAGLRVNGGEPFGGLATGFYMFLSFVTLAAAWVSIALGDGIAYLVVRETEGNCFEADDCPEEPCGGHECVCWKPDGSVLCSGGSSLRYCLNYGGEACGDLEDSKEWLLCSSIMLLIVAFFSTCSLVASVSTCCFCKRVIIVGSSEE 623
            D+    VRPK AAISCS+LWA AL+V G++  +VG ++F+EW+G+G+FWVGA+A+ AG +G+ V  GE  GGLAT FY  LS VTLAA+ VSI LG+G  +L+VR+  GNC + DDCP + C    CVCW+PDG+ +CS   S+RYC+ +GG++C D++DS+  LL S I+L+I+AF S  SLV +V+TC +CKR I+V SSEE
Sbjct:   15 DSGAGMVRPKHAAISCSHLWANALVVVGLSSVVVGVIIFTEWKGMGSFWVGAVAMAAGTSGIYVTQGEASGGLATVFYALLSLVTLAASVVSIFLGEGATFLIVRDVNGNCRDGDDCPSDFCPEDACVCWEPDGTDVCSDAGSVRYCVPFGGDSCSDIKDSENLLLGSFIILVIIAFCSFWSLVVAVNTCWYCKRTIVVESSEE 218
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BLAST of mRNA_H-elongata_contig18131.4849.1 vs. uniprot
Match: D7G5U1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U1_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 3.760e-41
Identity = 75/195 (38.46%), Postives = 118/195 (60.51%), Query Frame = 3 
Query:   24 SNVRPKDAAISCSYLWALALLVGGITEFIVGAVLFSEWEGLGAFWVGAIAIGAGIAGLRVNGGEPFGGLATGFYMFLSFVTLAAAWVSIALGDGIAYLVVRETEGNCFEADDCPEEPCGGHECVCWKPDGSVLCSGGSSLRYCLNYGGEACGDLEDSKEWLLCSSIMLLIVAFFSTCSLVASVSTCCFCKRVIIV 608
            S  RP    +  S++    L+  G  E +VGA++F++W+  G FWVG +A+ AG+AG  V+  E  GG  T  + F S + L AA +S+ L DG+ Y  V+ TEGNC +   C ++ CGG++CVCW+PDGS  C  G+S R CL Y G +C ++EDS+  L  S+ + +I+      +++ + +TCC CK  +++
Sbjct:   35 SLTRPFPRIVKASHVLGWILVAAGSAEIVVGALIFNDWKYAGGFWVGFMALAAGVAGTCVSITEHSGGFPTAAFFFQSAMCLVAATLSLVLVDGLVYSKVQSTEGNCVDTSSCLDDICGGYDCVCWEPDGSTDCFDGTSTRTCLQYQGSSCDEIEDSESLLAASTFLHIIIMALVAIAMLVTSATCCGCKYTVLL 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18131.4849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KV47_9PHAE2.470e-6754.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5U1_ECTSI3.760e-4138.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18131contigH-elongata_contig18131:758..5192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-12_009140.1
Exons5
Model size2929
Cds size399
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930045.1578012-UTR-H-elongata_contig18131:757..30421622930045.1578012-UTR-H-elongata_contig18131:757..3042Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18131 758..3042 -
1691679259.510139-UTR-H-elongata_contig18131:757..30421691679259.510139-UTR-H-elongata_contig18131:757..3042Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18131 758..3042 -
1622930045.2251854-UTR-H-elongata_contig18131:4424..45371622930045.2251854-UTR-H-elongata_contig18131:4424..4537Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18131 4425..4537 -
1691679259.555829-UTR-H-elongata_contig18131:4424..45371691679259.555829-UTR-H-elongata_contig18131:4424..4537Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18131 4425..4537 -
1622930045.23809-UTR-H-elongata_contig18131:5060..51921622930045.23809-UTR-H-elongata_contig18131:5060..5192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18131 5061..5192 -
1691679259.565109-UTR-H-elongata_contig18131:5060..51921691679259.565109-UTR-H-elongata_contig18131:5060..5192Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18131 5061..5192 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930045.1719706-CDS-H-elongata_contig18131:3042..31981622930045.1719706-CDS-H-elongata_contig18131:3042..3198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18131 3043..3198 -
1691679259.5200093-CDS-H-elongata_contig18131:3042..31981691679259.5200093-CDS-H-elongata_contig18131:3042..3198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18131 3043..3198 -
1622930045.1899273-CDS-H-elongata_contig18131:3470..35821622930045.1899273-CDS-H-elongata_contig18131:3470..3582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18131 3471..3582 -
1691679259.5285-CDS-H-elongata_contig18131:3470..35821691679259.5285-CDS-H-elongata_contig18131:3470..3582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18131 3471..3582 -
1622930045.2015352-CDS-H-elongata_contig18131:3932..39991622930045.2015352-CDS-H-elongata_contig18131:3932..3999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18131 3933..3999 -
1691679259.537494-CDS-H-elongata_contig18131:3932..39991691679259.537494-CDS-H-elongata_contig18131:3932..3999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18131 3933..3999 -
1622930045.213936-CDS-H-elongata_contig18131:4360..44241622930045.213936-CDS-H-elongata_contig18131:4360..4424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18131 4361..4424 -
1691679259.5468602-CDS-H-elongata_contig18131:4360..44241691679259.5468602-CDS-H-elongata_contig18131:4360..4424Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18131 4361..4424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18131.4849.1prot_H-elongata_contig18131.4849.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18131 3043..4424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18131.4849.1

>prot_H-elongata_contig18131.4849.1 ID=prot_H-elongata_contig18131.4849.1|Name=mRNA_H-elongata_contig18131.4849.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MFLSFVTLAAAWVSIALGDGIAYLVVRETEGNCFEADDCPEEPCGGHECV
CWKPDGSVLCSGGSSLRYCLNYGGEACGDLEDSKEWLLCSSIMLLIVAFF
STCSLVASVSTCCFCKRVIIVGSSEEPDSSWR*
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mRNA from alignment at H-elongata_contig18131:758..5192-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18131.4849.1 ID=mRNA_H-elongata_contig18131.4849.1|Name=mRNA_H-elongata_contig18131.4849.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4435bp|location=Sequence derived from alignment at H-elongata_contig18131:758..5192- (Himanthalia elongata Himel1 dioecious)
AGGCTCCTGTTGACACACCGCGTTCCAACGTAAGGCCAAAAGATGCTGCT
ATCAGCTGCTCGTACTTGTGGGCGCTAGCTCTTCTCGTCGGGGGTATAAC
AGAGTTCATTGTGGGAGCAGTGCTTTTTAGCGGTGGGTTCCCCGGTAGCG
CTTCAGAGGTGTTACACTATCCAAAAGGGTTTCTTTCCGCGTGAGACGCA
CGAGGTTGTTTCACAGATATACGAAATCACGCTAGTACTGGCACCGAATA
AAATAATACTAATAAATCTCGCCTAACAGTAGTAAATGGAATGCTTCGAA
GCAGGTATGGTTGCATCGTAGGCCAAGTTAGCCGTCTCTTACTGTCGAGC
GGTGGACAGAGGAACGAACGGGTGGACGAGTAAATGTGTGCGGGAGCTTT
TTGAGACGAGGTTGTCAAGCGATGGTGTGAAGGCCTACGTCGTGTCGTTC
AGTTATTTATCCCCCCCACCCGCGTGGTCAATAGTCTAACAACTGAGGCA
TGTAAAACGGGAGGATAGGTGCGTTTAGCACCGTATCAAAAGGTTCTCAG
CTTTTCCGACAACAAAGCGACGCATGCAGCATAACCGTCGTAAAGACCCC
TTGAGGTGCTCACCATCAATAGCGTTTCGTTCCGTTTCCTTTGTTGTCCC
TCCAGAGTGGGAAGGCTTGGGTGCGTTCTGGGTGGGAGCTATCGCCATCG
GCGCGGGCATCGCCGGCTTGCGTGTAAACGGCGGCGAGCCGTTTGGAGGT
CTGGCGACGGGGTTTTACATGTTTCTCTCCTTCGTGACGCTCGCCGCCGC
GTGGGTTTCCATCGCCCTCGGTGACGGCATTGGTGAGCGTGATGCTGCTG
GGGACAGGGGGTGGGGAGGAAAATGCGGGGCGGGGCGAAGAGGGTGACCA
ATAGGCGCCAATTATTCAGTCCGAACGAGCGTGTCGAATCCCCTGGGTTG
TGGGTATGCGCATACCGGTGGTGCCTCTATTTTATTTATGTGTAATTTGA
AGTTGAAGCTTTAGAGCAAATGAGGTTCATCGCGCGACAACTCTGCCTCT
TCTGTCCCGGCTCGTGGCCCACTTTCCCTTAATCTCTCCTGCCTCGCCAT
ATCTTGATCGCTCCGCTGCTCTTTTTGTTGCCTCTTTCCACGGTTGTTTG
TACTGGATAATACATAATACGATGTCGCTATCACCGAGGATAGCATACCT
TGTTGTGAGGGAGACGGAAGGAAACTGCTTCGAAGCCGATGACTGTCCAG
AAGAGCCTTGGTGAGGCGCCTCTCTCGAATCATACTTAAGCTTGCTTGCT
CCCCCCATCTCTTCTTCGGCTTTTGTTTGTTCTTCGTCATCAGCGTGCGT
TTTGCTACTGCCGATATTGTGACATTGGCTCTAGGTTATGTGGGGGAGTA
CCGTACGGTGTTCAGGTAGATCTTGGCAAAAGCTTGCGCGCCCGAGGGGA
AACCTTGCAGTTGAAATAATTACCGATGGGAACCGAACTTAACACAGAGA
GAAAGTCTGCGCAAGGCAGATGGTACGCAAATGCCTTTCCCCGACTGCTC
TCCTCCATTCTTACGTCGAAAGCACGCCCCCCTCCCCCCCGTCAATGCAT
TTTCACCCAGCGGTGGTCACGAGTGCGTGTGCTGGAAACCAGACGGTTCG
GTTCTTTGCTCAGGAGGCAGCAGCTTGAGATATTGCCTGAACTACGGTGG
TGAAGCCTGCGGTGATCTTGAGGTGAGACCACAATGCCCGCCTCGTCGAA
TTGGCGCTCTACGTTATTGATCGTGCGTGAGCTAGTTTTCGCGACGCTAG
TCAATGCCGGGCCCATAAGAGGTGCGTCTCAAAATCGACGGCCTAGTAAT
GATGTTTCGCGTGTGCACCACCCGCTGTGTGATCAATTACTCGCGACACT
TCCTCCTCCTTACCCCCTCGGCTCGTCCTTCCTCCCCCTCCCCCTCCCCT
CCCCCTACCCCGTATTATGGTTCGAATCTCTTTTCTTCGCCCAGGACTCG
AAAGAGTGGTTGTTGTGTTCCTCAATCATGCTCCTGATCGTCGCTTTTTT
CTCGACGTGCTCGCTCGTGGCTTCGGTCAGCACTTGCTGCTTCTGCAAGC
GGGTAATTATCGTAGGGAGTTCCGAGGAACCTGACAGCTCGTGGCGCTAA
CGCGTGGCTTCGTTGGGCGCCGAGCGCGTTGCCTCTCCCTGCTCTCCTTC
GCTTTGGTTGGCCAGACTTGACGTGACATGGTCTTGGTTCTGATCCGACC
CCCTTGCAACTAATGTCGAGGTTGCGCTGAAAAGATTGCGCCAGGGACAC
TCATCTTTTGTTGCTCGCGTGAAGCCCCTAGTTACCCCGGAAGCGTCAAC
TTCTAGTCACCTTTTGACCGATGCCGATTTTGGGCTTGAATATATTACAC
TGGTGACCCACATCGCCTGTCGCTCGCCTGAAGCCCAGAATCACTCCGGG
AGCGTTAGCGAGCAAGAGGCATGGGTTGTGTGCCATAGCTACATAAGATA
ACATTTCCCCGTAGTCTCTGCATCTTTCACTGCATGGACCCCTTTGTACT
GTACTGATCCACCATTTAAGGTTTTGTTCTCTTCCGGCTTTGGAGACACC
GCCGGTTGATGCTCTTGCTGATGCTGTAGCAATACAGTGGTACTAGTGAA
TAACCGCGACGATGGCACTTCGGGGGTTGCCTGAAAAAGCCTGCCGCGAT
CGACGCGCGAGCACCAAATAAGCACGGGTTCCCATGATAATGCGGCGGGT
AAACGGGTGAAAGATCCGCGTCGTTTTAGCGACACCGCTGGCTCGAAAGA
AGTCGCTGAACGGACGGGTCGTCCCGTAAAGCTGCAACCGAGCACTATTT
CCCCTAAGTTGTAGCCTGTGCCAGTTTCCGGCACGATGCGGATGAATGAA
TGATGAGTGGGTTTCTACTTGTTACCCTTCTTGCGTCGCAAAGGACATAG
ATTATTCCACCAAAGTAAAAGCCGGCGGCCCGAAAATCGTTGAAAGTGCT
ATCTGGTATGTACAGTAGATATTTTAACAAGTGGAGTGAGTTCGGTTGAG
GCGTCTTCTTGGCGAACGGAAGCCTTTCGGAAAGCGCCAAGGAAAGGAAA
GTAGCGAGGCGATGAGGCTTTGGTTCTGCCTCAAGTTCTTGGGGCGTGGG
ATGAGGTAGGATGTTGGCACGAGGTATGTTGACACAAGTTAGGGAAGGGG
TTTCCGTTCCGCGCGAATCAATACTGACTTCATGGCGGCACACTGCAGCG
GCACACATTTTTACGCGTCGACCAATTCGCTTAACGTTGGAGAGTTGCAT
CGACTGGTGGAGTGAAAAATCAGGTGGCTCTAGAGCTAGCTCTTGGTGTT
GTTTCTGTTCCTGAAATGTTCGTGTTTCTAGGCTATCCCCCCTTCTTGTA
CTGCCTGCTGCTGTAGTAAGTCGTAAGTCCAGAACCGGGCTAGCGAACGA
AGATTTTCGACGGCTGGCTGTTACGGCGGAGATGTTTATTTAGGGCTCTT
AAAATTGCAATATGCTCCTAGATGTTTAGCATCACCTGCGACGGCGATTG
AATCCTACGGCGGGCCCTTGGAGAGGCCCTATCTACGGCATGTTTTCAAC
CGGGGAGAGGGGATGGGTTGAGTCCTCAAGATCACATGCGGGATGGGCGG
CGTTGAAGTATAATAGGCGGGATTGGTAGGCCTAGCACTTTCCAACACCC
AGGACTATCGACATGCATTCGCTTGTGGGTGAGAGCGTATTATTTTTTGT
CTCGTTTGCCAAGTGTTATCGTTAAACGATCTTCTGTTGATTCATACTAG
GGCTACAGTAGACCGCTAGCTTGCCTCTGTAAATGTGTGAGACTCTCTTT
GGATCATTTATACTGTATGGTGAATTCAAACTTTTAGGGCACGAATTGCC
CTTGCATCTGTGTAGCTATCGAGTGCTAAGTCTACATGTATCTCACCATG
TGTTTATGTTCGTATGTGTATATATGTGTATGTGTGGTTATTAAATTGCA
CATAACGTGTGCGTGTGTGTGTGTACGTCTGAGTGTGTATTTATGAAGTT
GAACAGAACGCGAAATCCGGCCCTGTCATACTAGTCTTTTTAGGCTACTC
GCATACTAGTCTTATTTGTCCTCCCAATGGGGATGAATGATGTATATGTG
TGTTTGTATTTATTAAATTGCGTGTGAGTGTGTGTGTGATTGGGTATTCA
TGAATGTGTTTTAATTAATGTTCGTGTTTATGTCTGTGTAATTGTGTAAT
TTACTTAATTGTACATTTTCCTTGATCAGCTGACCACAAGCAGAAGGCCC
CCAAATCCAGTTGATCCCTACTCTGCTATATATATGTGATGGCCACACAC
ACATAACATGCTATAATAGCCATTCTAGGCTCTCCTCTCTCTCTAGCATT
GGTGCTCTCAATAGGGGATTAATAATATTTGTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig18131:758..5192-

>mRNA_H-elongata_contig18131.4849.1 ID=mRNA_H-elongata_contig18131.4849.1|Name=mRNA_H-elongata_contig18131.4849.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig18131:758..5192- (Himanthalia elongata Himel1 dioecious)
ATGTTTCTCTCCTTCGTGACGCTCGCCGCCGCGTGGGTTTCCATCGCCCT
CGGTGACGGCATTGATGTTTCTCTCCTTCGTGACGCTCGCCGCCGCGTGG
GTTTCCATCGCCCTCGGTGACGGCATTGCATACCTTGTTGTGAGGGAGAC
GGAAGGAAACTGCTTCGAAGCCGATGACTGTCCAGAAGAGCCTTGCATAC
CTTGTTGTGAGGGAGACGGAAGGAAACTGCTTCGAAGCCGATGACTGTCC
AGAAGAGCCTTGCGGTGGTCACGAGTGCGTGTGCTGGAAACCAGACGGTT
CGGTTCTTTGCTCAGGAGGCAGCAGCTTGAGATATTGCCTGAACTACGGT
GGTGAAGCCTGCGGTGATCTTGAGCGGTGGTCACGAGTGCGTGTGCTGGA
AACCAGACGGTTCGGTTCTTTGCTCAGGAGGCAGCAGCTTGAGATATTGC
CTGAACTACGGTGGTGAAGCCTGCGGTGATCTTGAGGACTCGAAAGAGTG
GTTGTTGTGTTCCTCAATCATGCTCCTGATCGTCGCTTTTTTCTCGACGT
GCTCGCTCGTGGCTTCGGTCAGCACTTGCTGCTTCTGCAAGCGGGTAATT
ATCGTAGGGAGTTCCGAGGAACCTGACAGCTCGTGGCGCTAAGACTCGAA
AGAGTGGTTGTTGTGTTCCTCAATCATGCTCCTGATCGTCGCTTTTTTCT
CGACGTGCTCGCTCGTGGCTTCGGTCAGCACTTGCTGCTTCTGCAAGCGG
GTAATTATCGTAGGGAGTTCCGAGGAACCTGACAGCTCGTGGCGCTAA
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