mRNA_H-elongata_contig181259.4845.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181259.4845.1
Unique NamemRNA_H-elongata_contig181259.4845.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181259.4845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181259contigH-elongata_contig181259:391..988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size599
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.722347-UTR-H-elongata_contig181259:390..5651622930044.722347-UTR-H-elongata_contig181259:390..565Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181259 391..565 +
1691679259.301527-UTR-H-elongata_contig181259:390..5651691679259.301527-UTR-H-elongata_contig181259:390..565Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig181259 391..565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.73846-CDS-H-elongata_contig181259:565..9881622930044.73846-CDS-H-elongata_contig181259:565..988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181259 566..988 +
1691679259.3095589-CDS-H-elongata_contig181259:565..9881691679259.3095589-CDS-H-elongata_contig181259:565..988Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181259 566..988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181259.4845.1prot_H-elongata_contig181259.4845.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181259 566..988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181259.4845.1

>prot_H-elongata_contig181259.4845.1 ID=prot_H-elongata_contig181259.4845.1|Name=mRNA_H-elongata_contig181259.4845.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
MLKWTSWTRVLFASSSLLNLTPTNAFFYPLLKTPLHGAHPSVRLLFTDII
SCCTRHDTMLPLAGSTSGSSDDFQSNNAEDDMALTSLLLPPEDDTYDSIF
SVLREWQSTPHPQDGSARYDKFGKATGGIWRSKLLGLFPVT
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mRNA from alignment at H-elongata_contig181259:391..988+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181259.4845.1 ID=mRNA_H-elongata_contig181259.4845.1|Name=mRNA_H-elongata_contig181259.4845.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=598bp|location=Sequence derived from alignment at H-elongata_contig181259:391..988+ (Himanthalia elongata Himel1 dioecious)
TGTTACCCGGCAACTATTTCCAAAAGTATGAAAAATTTCATAATTTTACA
ACCATTTAGCTTTAAACAAATGAACTCATTCAATCCATGTTTTTTTGTTG
CATCTTCGTGTTATCACTTTTACACGGCACGGTGGTGGTTGACGTGGAGG
ATCATCTTGCCCTTCATTGATCACCATGTTGAAGTGGACATCGTGGACAA
GGGTTCTCTTTGCAAGCTCCAGCTTGTTAAATCTTACGCCCACAAACGCG
TTCTTTTACCCTCTGCTCAAGACTCCACTGCACGGAGCCCACCCCAGCGT
TCGTCTGCTATTTACCGACATCATCAGCTGTTGTACTAGGCACGACACTA
TGCTTCCTTTGGCTGGGAGTACTTCCGGAAGCAGCGATGACTTTCAAAGC
AACAATGCTGAGGACGACATGGCTCTAACTTCACTCCTGCTTCCACCGGA
AGACGACACCTACGATAGCATCTTCTCTGTGCTACGCGAGTGGCAATCCA
CCCCACACCCTCAAGACGGGTCGGCTCGCTATGATAAGTTTGGAAAGGCT
ACTGGCGGAATCTGGAGGTCGAAGCTTTTGGGCTTGTTCCCTGTCACG
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Coding sequence (CDS) from alignment at H-elongata_contig181259:391..988+

>mRNA_H-elongata_contig181259.4845.1 ID=mRNA_H-elongata_contig181259.4845.1|Name=mRNA_H-elongata_contig181259.4845.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig181259:391..988+ (Himanthalia elongata Himel1 dioecious)
ATGTTGAAGTGGACATCGTGGACAAGGGTTCTCTTTGCAAGCTCCAGCTT
GTTAAATCTTACGCCCACAAACGCGTTCTTTTACCCTCTGCTCAAGACTC
CACTGCACGGAGCCCACCCCAGCGTTCGTCTGCTATTTACCGACATCATC
AGCTGTTGTACTAGGCACGACACTATGCTTCCTTTGGCTGGGAGTACTTC
CGGAAGCAGCGATGACTTTCAAAGCAACAATGCTGAGGACGACATGGCTC
TAACTTCACTCCTGCTTCCACCGGAAGACGACACCTACGATAGCATCTTC
TCTGTGCTACGCGAGTGGCAATCCACCCCACACCCTCAAGACGGGTCGGC
TCGCTATGATAAGTTTGGAAAGGCTACTGGCGGAATCTGGAGGTCGAAGC
TTTTGGGCTTGTTCCCTGTCACGATGTTGAAGTGGACATCGTGGACAAGG
GTTCTCTTTGCAAGCTCCAGCTTGTTAAATCTTACGCCCACAAACGCGTT
CTTTTACCCTCTGCTCAAGACTCCACTGCACGGAGCCCACCCCAGCGTTC
GTCTGCTATTTACCGACATCATCAGCTGTTGTACTAGGCACGACACTATG
CTTCCTTTGGCTGGGAGTACTTCCGGAAGCAGCGATGACTTTCAAAGCAA
CAATGCTGAGGACGACATGGCTCTAACTTCACTCCTGCTTCCACCGGAAG
ACGACACCTACGATAGCATCTTCTCTGTGCTACGCGAGTGGCAATCCACC
CCACACCCTCAAGACGGGTCGGCTCGCTATGATAAGTTTGGAAAGGCTAC
TGGCGGAATCTGGAGGTCGAAGCTTTTGGGCTTGTTCCCTGTCACG
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