mRNA_H-elongata_contig18117.4840.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18117.4840.1
Unique NamemRNA_H-elongata_contig18117.4840.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18117.4840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18117contigH-elongata_contig18117:202..618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18117.4840.1prot_H-elongata_contig18117.4840.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18117 229..555 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.3365066-UTR-H-elongata_contig18117:201..2281622930044.3365066-UTR-H-elongata_contig18117:201..228Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18117 202..228 +
1691679259.1789534-UTR-H-elongata_contig18117:201..2281691679259.1789534-UTR-H-elongata_contig18117:201..228Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18117 202..228 +
1622930044.3977525-UTR-H-elongata_contig18117:555..6181622930044.3977525-UTR-H-elongata_contig18117:555..618Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18117 556..618 +
1691679259.1970215-UTR-H-elongata_contig18117:555..6181691679259.1970215-UTR-H-elongata_contig18117:555..618Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18117 556..618 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930044.357853-CDS-H-elongata_contig18117:228..5551622930044.357853-CDS-H-elongata_contig18117:228..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18117 229..555 +
1691679259.187916-CDS-H-elongata_contig18117:228..5551691679259.187916-CDS-H-elongata_contig18117:228..555Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18117 229..555 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18117.4840.1

>prot_H-elongata_contig18117.4840.1 ID=prot_H-elongata_contig18117.4840.1|Name=mRNA_H-elongata_contig18117.4840.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
MSSPAAQCQWVWLSEYGQHSWRGPRDTVLIRVPHQTSIEPQLQPPHVLVN
RTRARELIIHAILTTQDKTQTHKHSPLERAPLFNATREVRVFAPGTYLSR
GWTYNRTS*
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mRNA from alignment at H-elongata_contig18117:202..618+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18117.4840.1 ID=mRNA_H-elongata_contig18117.4840.1|Name=mRNA_H-elongata_contig18117.4840.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig18117:202..618+ (Himanthalia elongata Himel1 dioecious)
CCACAGACTAAGTTGCAAAAATGCGTAATGTCGAGCCCCGCCGCCCAGTG
TCAATGGGTCTGGCTCTCGGAATATGGCCAGCACTCTTGGAGAGGGCCTC
GTGATACTGTACTGATCAGGGTACCCCATCAGACGAGCATCGAGCCACAG
CTGCAGCCCCCCCACGTACTTGTGAATCGCACGCGCGCGCGTGAACTGAT
AATACACGCGATACTCACCACACAAGACAAAACACAAACACACAAACACT
CACCACTCGAACGCGCGCCGCTTTTCAACGCCACCCGCGAGGTACGAGTC
TTTGCGCCCGGCACGTACCTCAGCCGTGGGTGGACATACAACAGAACTTC
GTAAAAATGTCATTTATGACGGTCACAAGAGTGCGTTCCCGTACCCTCGT
GCCCAACGCCACCCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig18117:202..618+

>mRNA_H-elongata_contig18117.4840.1 ID=mRNA_H-elongata_contig18117.4840.1|Name=mRNA_H-elongata_contig18117.4840.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig18117:202..618+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAGCCCCGCCGCCCAGTGTCAATGGGTCTGGCTCTCGGAATATGG
CCAGCACTCTTGGAGAGGGCCTCGTGATACTGTACTGATCAGGGTACCCC
ATCAGACGAGCATCGAGCCACAGCTGCAGCCCCCCCACGTACTTGTGAAT
CGCACGCGCGCGCGTGAACTGATAATACACGCGATACTCACCACACAAGA
CAAAACACAAACACACAAACACTCACCACTCGAACGCGCGCCGCTTTTCA
ACGCCACCCGCGAGGTACGAGTCTTTGCGCCCGGCACGTACCTCAGCCGT
GGGTGGACATACAACAGAACTTCGTAAATGTCGAGCCCCGCCGCCCAGTG
TCAATGGGTCTGGCTCTCGGAATATGGCCAGCACTCTTGGAGAGGGCCTC
GTGATACTGTACTGATCAGGGTACCCCATCAGACGAGCATCGAGCCACAG
CTGCAGCCCCCCCACGTACTTGTGAATCGCACGCGCGCGCGTGAACTGAT
AATACACGCGATACTCACCACACAAGACAAAACACAAACACACAAACACT
CACCACTCGAACGCGCGCCGCTTTTCAACGCCACCCGCGAGGTACGAGTC
TTTGCGCCCGGCACGTACCTCAGCCGTGGGTGGACATACAACAGAACTTC
GTAA
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