mRNA_H-elongata_contig18105.4835.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig18105.4835.1 vs. uniprot
Match: D7FW98_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW98_ECTSI) HSP 1 Score: 137 bits (345), Expect = 2.430e-33 Identity = 106/207 (51.21%), Postives = 119/207 (57.49%), Query Frame = 1
Query: 79 VWNRRKQEWMEVDDDGAVTPQKGAASPTNP--FSSNTLSSGLQKNPTDSSSVYKPATRSHAPPGGVTSISFGD-YMGPTATPAPAKAAPVNPAQVGAAPXXXXXPTTPESAASTQDVLAPIHMMELPQGAEDEEEEAGDKXXXXGETVALVPPPPVQPKPETATVPRAVSSNAYASGTNQNSGNFMTGRPTTRVRAPPGGASSITFG 690
VWNRRKQ+W+EVD + AASPT+ SSN +SG+ +N + KP TR HAPPGG +SISFGD + GPTA A A Q G PTTPESA ST++ API MMELP A XXXX VSSNAYASG+NQNSGNFMTGRPTTRVRAPPGGASSITFG
Sbjct: 2 VWNRRKQQWIEVDVTEESPSKAAAASPTSSTALSSNAYASGVNQN-AGNFLTDKPITRIHAPPGGASSISFGDQHTGPTA--AAAGVTTKTQDQQGLVLGTPTQPTTPESAESTEEGPAPIPMMELPP-APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSNAYASGSNQNSGNFMTGRPTTRVRAPPGGASSITFG 204
BLAST of mRNA_H-elongata_contig18105.4835.1 vs. uniprot
Match: A0A7S2RVM1_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RVM1_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 6.970e-11 Identity = 71/194 (36.60%), Postives = 87/194 (44.85%), Query Frame = 1
Query: 109 EVDDDGAVTPQKGAASPTNPFSSNTLSSGLQKNPTDSSSVYKPATRSHAPPGGVTSISFGDYMGPTATPAPAKAAPVNPAQVGAAPXXXXXPTTPESAASTQDVLAPIHMMELPQGAEDEEEEAGDKXXXXGETVALVPPPPVQPKPETATVPRAVSSNAYASGTNQNSGNFMTGRPTTRVRAPPGGASSITFG 690
+ D T + AA+P SSN +SG +N + +P TR HAPPGG +S FG P P KA+ V P Q P P +V +H P G K PPV + VSSNAYA+G+NQN GNF+T RPTTRV APPGG S+ITFG
Sbjct: 88 DPDQAAKATSRASAAAPERKVSSNAYASGSNQN-AGNVLTDRPTTRVHAPPGGSSSNIFG--TDPVQEP---KASWVAPPQ--------QQPVEPTPIVDKTNV---VHTAPAP----------GTKKVE----------PPVDSR---------VSSNAYATGSNQNCGNFITERPTTRVHAPPGGVSNITFG 235
BLAST of mRNA_H-elongata_contig18105.4835.1 vs. uniprot
Match: A0A2R5GBR3_9STRA (Protein SPIRAL1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBR3_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 1.590e-8 Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1
Query: 574 VSSNAYASGTNQNSGNFMTGRPTTRVRAPPGGASSITFG 690
VSSNA+ASG+N N+GNF+T RPTTRV APPGG S ITFG
Sbjct: 104 VSSNAFASGSNMNAGNFITDRPTTRVHAPPGGRSQITFG 142
BLAST of mRNA_H-elongata_contig18105.4835.1 vs. uniprot
Match: C1MUJ1_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MUJ1_MICPC) HSP 1 Score: 63.5 bits (153), Expect = 3.570e-7 Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1
Query: 568 RAVSSNAYASGTNQNSGNFMTGRPTTRVRAPPGGASSITFG*CKGENAKARDAVVG 735
RAVSSNAYA+G +QN GN++T RP+TR+ APPGG S I+ G G A AR +V G
Sbjct: 94 RAVSSNAYANGADQNCGNYITDRPSTRLHAPPGGVSQISLG--GGYEAPARASVTG 147
BLAST of mRNA_H-elongata_contig18105.4835.1 vs. uniprot
Match: A0A8J1ZRW8_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1ZRW8_9DINO) HSP 1 Score: 63.5 bits (153), Expect = 3.740e-7 Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 1
Query: 550 ETATVPRAVSSNAYASGTNQNSGNFMTGRPTTRVRAPPGGASSITFG 690
+TA VS+N YA G++QNSGN MTG PTTRV APPGG SSI FG
Sbjct: 20 DTADTGAPVSANRYARGSDQNSGNMMTGHPTTRVHAPPGGKSSIVFG 66
BLAST of mRNA_H-elongata_contig18105.4835.1 vs. uniprot
Match: A0A5D6XR02_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR02_9STRA) HSP 1 Score: 60.5 bits (145), Expect = 8.810e-7 Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1
Query: 568 RAVSSNAYASGTNQNSGNFMTGRPTTRVRAPPGGASSITFG 690
R +SSN+YA+GTNQN+GN +T R TR+ APPGG SSITFG
Sbjct: 147 RQMSSNSYATGTNQNAGNMLTERRITRIHAPPGGKSSITFG 187
BLAST of mRNA_H-elongata_contig18105.4835.1 vs. uniprot
Match: A0A2R5GNM1_9STRA (Pentafunctional AROM polypeptide n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNM1_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.090e-6 Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 1
Query: 556 ATVPRAVSSNAYASGTNQNSGNFMTGRPTTRVRAPPGGASSITFG 690
A P S+N++ASG +QNS NFMTGRPTTRV PPGGASSI FG
Sbjct: 406 AAPPSPPSANSFASGAHQNSENFMTGRPTTRVHQPPGGASSIIFG 450
BLAST of mRNA_H-elongata_contig18105.4835.1 vs. uniprot
Match: A4RZ02_OSTLU (SAP domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RZ02_OSTLU) HSP 1 Score: 61.6 bits (148), Expect = 2.190e-6 Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 1
Query: 577 SSNAYASGTNQNSGNFMTGRPTTRVRAPPGGASSITFG 690
SSNA+ASG NQNSGN +T RPTTR APPGG SSI+FG
Sbjct: 3 SSNAFASGANQNSGNVLTDRPTTRTHAPPGGRSSISFG 40
BLAST of mRNA_H-elongata_contig18105.4835.1 vs. uniprot
Match: K3X8R6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8R6_GLOUD) HSP 1 Score: 57.8 bits (138), Expect = 4.000e-6 Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1
Query: 568 RAVSSNAYASGTNQNSGNFMTGRPTTRVRAPPGGASSITFG 690
R SSN+YA+G+NQN+GN +T R TR+ APPGG SSITFG
Sbjct: 115 RERSSNSYANGSNQNAGNVLTDRRITRIHAPPGGTSSITFG 155
BLAST of mRNA_H-elongata_contig18105.4835.1 vs. uniprot
Match: A0A7S0X2V9_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X2V9_9CHLO) HSP 1 Score: 60.8 bits (146), Expect = 6.600e-6 Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1
Query: 571 AVSSNAYASGTNQNSGNFMTGRPTTRVRAPPGGASSITFG*CKGENAKARDAVVGLPKAAFGRRQKRE 774
A SSNA+A+G++QN+GNF+T RPTTR+ APPGG S I+FG +N + P A ++RE
Sbjct: 120 AASSNAFANGSDQNNGNFITDRPTTRLHAPPGGHSQISFG---TDNVFSAPVTSSRPNTAAAAAKERE 184 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18105.4835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18105.4835.1 >prot_H-elongata_contig18105.4835.1 ID=prot_H-elongata_contig18105.4835.1|Name=mRNA_H-elongata_contig18105.4835.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=231bp MSRGHVSQTTLSLGGSGSAVTPGKKKVWNRRKQEWMEVDDDGAVTPQKGAback to top mRNA from alignment at H-elongata_contig18105:1905..4775+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18105.4835.1 ID=mRNA_H-elongata_contig18105.4835.1|Name=mRNA_H-elongata_contig18105.4835.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2871bp|location=Sequence derived from alignment at H-elongata_contig18105:1905..4775+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18105:1905..4775+ >mRNA_H-elongata_contig18105.4835.1 ID=mRNA_H-elongata_contig18105.4835.1|Name=mRNA_H-elongata_contig18105.4835.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1386bp|location=Sequence derived from alignment at H-elongata_contig18105:1905..4775+ (Himanthalia elongata Himel1 dioecious)back to top |