mRNA_H-elongata_contig181045.4834.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig181045.4834.1
Unique NamemRNA_H-elongata_contig181045.4834.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: D8LHI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHI4_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 2.720e-17
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
            G+LG  RGA+LVSLCWVA+LV+IIDRKWWQA+VWAVISA F+ VGIIH
Sbjct:  436 GILGLKRGAILVSLCWVAMLVHIIDRKWWQASVWAVISACFTAVGIIH 483          
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A7S2K3Q3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K3Q3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.240e-9
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
            GVL + +G++L+SL WV +L+Y+IDRKW  A VWA I A F+  GIIH
Sbjct:   70 GVLAWKQGSVLISLIWVCMLMYVIDRKWLSATVWATIGALFAASGIIH 117          
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A5E8H852_9LEPT (Putative membrane protein n=1 Tax=Leptospira yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523 TaxID=1249483 RepID=A0A5E8H852_9LEPT)

HSP 1 Score: 58.9 bits (141), Expect = 5.460e-9
Identity = 25/48 (52.08%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
            GVL  S+G L+ S+ W A++V+I++R+WW+A++WAVI+A  S VG IH
Sbjct:  182 GVLSLSQGFLITSMIWAAMVVFILEREWWKASLWAVIAAVLSTVGWIH 229          
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: B0STY1_LEPBP (Putative permease putative transmembrane protein n=23 Tax=Leptospira TaxID=171 RepID=B0STY1_LEPBP)

HSP 1 Score: 57.0 bits (136), Expect = 3.330e-8
Identity = 25/48 (52.08%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
            GVL  S+G L+ S+ W A++V+I++R+W +A+VWA+I+A  SMVG IH
Sbjct:  442 GVLSLSQGFLITSMIWAAMVVFILEREWLKASVWAIIAAVLSMVGWIH 489          
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A6H3NKW5_9LEPT (NCS2 family permease n=4 Tax=Leptospira TaxID=171 RepID=A0A6H3NKW5_9LEPT)

HSP 1 Score: 53.9 bits (128), Expect = 4.070e-7
Identity = 23/48 (47.92%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
            GVL  S+G L+ S+ W A++V++++R+W +AA+WA I+A  SM+G IH
Sbjct:  442 GVLALSQGFLITSMIWSAMVVFVLEREWNKAAIWATIAAILSMIGWIH 489          
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: R8ZYD9_9LEPT (Putative membrane protein n=20 Tax=Leptospira TaxID=171 RepID=R8ZYD9_9LEPT)

HSP 1 Score: 53.5 bits (127), Expect = 5.570e-7
Identity = 24/48 (50.00%), Postives = 37/48 (77.08%), Query Frame = 1
Query:    1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
            GVL  S+G L+ S+ W A++V+I++R+W +AA+WA I+A  SM+G IH
Sbjct:  442 GVLALSQGFLITSMVWSAMVVFILEREWNKAALWAFIAAVLSMIGWIH 489          
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A7S2WT88_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WT88_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.670e-6
Identity = 27/48 (56.25%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
            G +  S+ +LL+SL   + LVYIIDRK+ QAA W +ISA FS+ GIIH
Sbjct:  454 GYVAMSKSSLLLSLLVTSTLVYIIDRKFLQAAAWCLISALFSVFGIIH 501          
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A812JWC3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812JWC3_9DINO)

HSP 1 Score: 49.7 bits (117), Expect = 1.270e-5
Identity = 21/48 (43.75%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
            G+   + G+LLV +CWVA+ V+IIDR +++A +WA +S   S +G++H
Sbjct:  181 GLAAIAHGSLLVCICWVAMGVFIIDRNFFKALIWAAVSMGISALGLMH 228          
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Match: A0A2D6D4X0_9BACT (Permease n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A2D6D4X0_9BACT)

HSP 1 Score: 47.4 bits (111), Expect = 8.400e-5
Identity = 22/48 (45.83%), Postives = 36/48 (75.00%), Query Frame = 1
Query:    1 GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH 144
            GV+   RG LL ++   A++VYI++R++ +AAVWA+ +A  SMVG++H
Sbjct:  421 GVIALDRGFLLTAMVLAAMMVYIVEREFRKAAVWALAAAGLSMVGLMH 468          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig181045.4834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LHI4_ECTSI2.720e-1779.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2K3Q3_9STRA1.240e-956.25Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A5E8H852_9LEPT5.460e-952.08Putative membrane protein n=1 Tax=Leptospira yanag... [more]
B0STY1_LEPBP3.330e-852.08Putative permease putative transmembrane protein n... [more]
A0A6H3NKW5_9LEPT4.070e-747.92NCS2 family permease n=4 Tax=Leptospira TaxID=171 ... [more]
R8ZYD9_9LEPT5.570e-750.00Putative membrane protein n=20 Tax=Leptospira TaxI... [more]
A0A7S2WT88_9STRA2.670e-656.25Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A812JWC3_9DINO1.270e-543.75Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A2D6D4X0_9BACT8.400e-545.83Permease n=1 Tax=Candidatus Poribacteria bacterium... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig181045contigH-elongata_contig181045:203..346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue8.2e-14
Seed eggNOG ortholog2880.D8LHI4
EggNOG free text desc.purine nucleobase transmembrane transporter activity
EggNOG OGs2QRYA@2759,COG2252@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size144
Cds size144
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.8063805-CDS-H-elongata_contig181045:202..3461622930043.8063805-CDS-H-elongata_contig181045:202..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181045 203..346 -
1691679258.9522274-CDS-H-elongata_contig181045:202..3461691679258.9522274-CDS-H-elongata_contig181045:202..346Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig181045 203..346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig181045.4834.1prot_H-elongata_contig181045.4834.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig181045 203..346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig181045.4834.1

>prot_H-elongata_contig181045.4834.1 ID=prot_H-elongata_contig181045.4834.1|Name=mRNA_H-elongata_contig181045.4834.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
GVLGFSRGALLVSLCWVAILVYIIDRKWWQAAVWAVISATFSMVGIIH
back to top

mRNA from alignment at H-elongata_contig181045:203..346-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig181045.4834.1 ID=mRNA_H-elongata_contig181045.4834.1|Name=mRNA_H-elongata_contig181045.4834.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig181045:203..346- (Himanthalia elongata Himel1 dioecious)
GGTGTCCTCGGCTTCAGTAGGGGAGCCCTCCTCGTGTCTCTCTGCTGGGT TGCCATCCTGGTGTACATTATCGACCGCAAATGGTGGCAGGCTGCTGTCT GGGCCGTTATCTCCGCAACCTTTAGCATGGTTGGCATCATCCAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig181045:203..346-

>mRNA_H-elongata_contig181045.4834.1 ID=mRNA_H-elongata_contig181045.4834.1|Name=mRNA_H-elongata_contig181045.4834.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig181045:203..346- (Himanthalia elongata Himel1 dioecious)
GGTGTCCTCGGCTTCAGTAGGGGAGCCCTCCTCGTGTCTCTCTGCTGGGT
TGCCATCCTGGTGTACATTATCGACCGCAAATGGTGGCAGGCTGCTGTCT
GGGCCGTTATCTCCGCAACCTTTAGCATGGTTGGCATCATCCATGGTGTC
CTCGGCTTCAGTAGGGGAGCCCTCCTCGTGTCTCTCTGCTGGGTTGCCAT
CCTGGTGTACATTATCGACCGCAAATGGTGGCAGGCTGCTGTCTGGGCCG
TTATCTCCGCAACCTTTAGCATGGTTGGCATCATCCAT
back to top