mRNA_H-elongata_contig180991.4832.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180991.4832.1
Unique NamemRNA_H-elongata_contig180991.4832.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig180991.4832.1 vs. uniprot
Match: A0A420HXC5_9PEZI (Uncharacterized protein n=1 Tax=Erysiphe neolycopersici TaxID=212602 RepID=A0A420HXC5_9PEZI)

HSP 1 Score: 69.3 bits (168), Expect = 1.220e-10
Identity = 40/169 (23.67%), Postives = 80/169 (47.34%), Query Frame = 1
Query:   10 PNFLSSVLALGDNWAESIEALSSADLSRFPAGWIRHVKLGELSEKARNRLALGAAGHRYTSALKFLRPADFIQGRAGVATF------------VAGIRAWTKDRVWWDLHPITKSGNIITVTGSLNKLIEDCLHTCVNEARLGELSRARILHHVPGAVPTHSNWNGFDL 480
            PNF+++++       E  + +SS DL +    W++ +    +S+++ NRL LG AG+R  S    + P  +    A    +            V+ +R++ +    W+ HP T+S +I++  G++NK   + +  C  +  L +L   + L  +P   P H+ +  + L
Sbjct:  358 PNFIANIMNCKSTVTEVSDYISSFDLIKLSPEWVKFIPTTSISQESVNRLGLGVAGYRLVSVFNVIAPDMYTDKTAKDEEYKYATKPAYLDVAVSVMRSFRQAGYCWNFHPATRSPDIMSTYGNINKNAGNLILECYTKKTLEKLKSIKKLSVIPQFDPAHTEYRTWTL 526          
BLAST of mRNA_H-elongata_contig180991.4832.1 vs. uniprot
Match: A0A420HS67_9PEZI (Uncharacterized protein n=1 Tax=Erysiphe neolycopersici TaxID=212602 RepID=A0A420HS67_9PEZI)

HSP 1 Score: 67.8 bits (164), Expect = 3.480e-10
Identity = 44/168 (26.19%), Postives = 82/168 (48.81%), Query Frame = 1
Query:    1 QGNPNFLSSVLALGDNWAESIEALSSADLSRFPAGWIRHVKLGELSEKARNRLALGAAGHRYTSALKFLRPADFIQGRAG-------------VATFVAGIRAWTKDRVWWDLHPITKSGNIITVTGSLNKLIEDCLHTCVNEARLGELSRARILHHVPGAVPTHSNW 465
            Q  PNF+S+++      +E  E +SS DL +    W++++    +S+++ NRL LG AG+R  S    + P D    +A              + T V  +R++ +    WD HP T+S +I++  G++NK   + +  C  +  L +L   + L  +P    +H+ +
Sbjct:  204 QPMPNFISNIMNCRATISEVSEYISSFDLIKLSPEWVKYIPTTCISQESVNRLGLGVAGYRLVSVFNVVEP-DMYTDKAKNDEEYRYKTKPTYLDTAVTIMRSFRQAGYCWDFHPATRSPDIMSKYGNINKNAGNLMLECYTKRTLKKLLEIKKLSVIPTFDYSHTEY 370          
BLAST of mRNA_H-elongata_contig180991.4832.1 vs. uniprot
Match: A0A0B1P261_UNCNE (Uncharacterized protein n=1 Tax=Uncinula necator TaxID=52586 RepID=A0A0B1P261_UNCNE)

HSP 1 Score: 66.6 bits (161), Expect = 8.210e-10
Identity = 43/172 (25.00%), Postives = 77/172 (44.77%), Query Frame = 1
Query:    1 QGNPNFLSSVLALGDNWAESIEALSSADLSRFPAGWIRHVKLGELSEKARNRLALGAAGHRYTSALKFLRPADFIQGRAG------------VATFVAGIRAWTKDRVWWDLHPITKSGNIITVTGSLNKLIEDCLHTCVNEARLGELSRARILHHVPGAVPTHSNWNGFDL 480
            Q  P F+++VL   DN  +  + L+S D  +    W +H+    +S++A NRL L  AG+R  S    + P  +                  + T V  +R++      WD HP T+S +I +  G++NK   + +  C     L +L   + L  +P   P H+++  + +
Sbjct:  165 QPMPKFITTVLGCRDNIFDITDYLASFDSVKMDPKWFQHLPTNHISQEAVNRLGLRVAGYRLVSIFTNVEPDLYTAKSVSNNEYRQLTKPSYLDTAVEIMRSFKTAGYCWDFHPATRSPDIFSTYGNINKSASNLMLECYTTETLTKLKDTKRLAVMPVYDPAHTDYKTWSM 336          
BLAST of mRNA_H-elongata_contig180991.4832.1 vs. uniprot
Match: A0A420I6K5_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Erysiphe neolycopersici TaxID=212602 RepID=A0A420I6K5_9PEZI)

HSP 1 Score: 62.0 bits (149), Expect = 6.270e-9
Identity = 35/127 (27.56%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   10 PNFLSSVLALGDNWAESIEALSSADLSRFPAGWIRHVKLGELSEKARNRLALGAAGHRYTSALKFLRPADFIQGR------------AGVATFVAGIRAWTKDRVWWDLHPITKSGNIITVTGSLNK 354
            PNF+ +++    + AE  + +SS DL +    W++++    +S++  NRL LG AG+R  S L  + P  +                A +   V  IR++ +    W+ HP T+S +I++  G++NK
Sbjct:   34 PNFIKNIMNCKASIAEVSDYISSFDLIKLSPEWVKYIPTTSISQETVNRLGLGVAGYRLVSVLNVVEPDMYTDNSNSEEEYRYKTKPAYLDVAVTVIRSFRQAGYCWNFHPATRSPDIMSKYGNINK 160          
BLAST of mRNA_H-elongata_contig180991.4832.1 vs. uniprot
Match: A0A420HK93_9PEZI (Uncharacterized protein n=1 Tax=Erysiphe neolycopersici TaxID=212602 RepID=A0A420HK93_9PEZI)

HSP 1 Score: 53.1 bits (126), Expect = 3.800e-5
Identity = 39/167 (23.35%), Postives = 71/167 (42.51%), Query Frame = 1
Query:    1 QGNPNFLSSVLALGDNWAESIEALSSADLSRFPAGWIRHVKLGELSEKARNRLALGAAGHRYTSALKFLRPADFIQGRAG------------VATFVAGIRAWTKDRVWWDLHPITKSGNIITVTGSLNKLIEDCLHTCVNEARLGELSRARILHHVPGAVPTHSNW 465
            Q  PNF+++++      AE I   S                   +S+++ NRL LG AG+R  S    + P  +     G            + T V  +R++ +    W+ HP T+S +I++  G++NK   + +  C  +  L +L   + L  +P   P H+ +
Sbjct:  165 QPMPNFITNIMNFRSTIAEFIPTTS-------------------ISQESVNRLGLGVAGYRLVSVFNVIEPDMYKDKAKGDEEFRYPTKPKYIDTAVEVMRSFRQAGYCWNFHPATRSPDIMSTYGNVNKNAGNLILECYTKKTLEKLKEIKKLSVIPQFDPAHTEY 312          
BLAST of mRNA_H-elongata_contig180991.4832.1 vs. uniprot
Match: A0A420I7H3_9PEZI (Uncharacterized protein n=1 Tax=Erysiphe neolycopersici TaxID=212602 RepID=A0A420I7H3_9PEZI)

HSP 1 Score: 52.8 bits (125), Expect = 5.160e-5
Identity = 44/183 (24.04%), Postives = 75/183 (40.98%), Query Frame = 1
Query:    1 QGNPNFLSSVLALGDNWAESIEALSSADLSRFPAGWIRHVKLGELSEKARNRLALGAAGHRYTSALKFLRPADFIQGRAGVATFVAGIRAWTKDRV------------WWDLHPITKSGNIITVTGSLNKLIEDCLHTCVNEARLGELSRARILHHVPGAVPTHSNWNGFDLSALPPLTSPIF 513
            Q  P F+++V+      ++ IE LSS DL +    W++++    + E   NRL L  AG+R  S    ++P  +         +    +    DR              WD HP T+S ++I+  G++NK   + +        L +L     L   P   P H+ +  + L      T+ IF
Sbjct:  134 QPMPRFITTVIKCKATSSQIIEYLSSFDLIKLGPKWVKYIPTS-IREDTVNRLGLVVAGYRLVSVFNQVQPDLYTSTTQKHQKYKQKTKPKYLDRAIEVAKSFKTAGYCWDFHPATRSPDLISKYGNINKNATNLMLESYTTETLVKLVETNRLPAKPIFDPAHTEYRTWTLDMKYIATAKIF 315          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180991.4832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A420HXC5_9PEZI1.220e-1023.67Uncharacterized protein n=1 Tax=Erysiphe neolycope... [more]
A0A420HS67_9PEZI3.480e-1026.19Uncharacterized protein n=1 Tax=Erysiphe neolycope... [more]
A0A0B1P261_UNCNE8.210e-1025.00Uncharacterized protein n=1 Tax=Uncinula necator T... [more]
A0A420I6K5_9PEZI6.270e-927.56Uncharacterized protein (Fragment) n=1 Tax=Erysiph... [more]
A0A420HK93_9PEZI3.800e-523.35Uncharacterized protein n=1 Tax=Erysiphe neolycope... [more]
A0A420I7H3_9PEZI5.160e-524.04Uncharacterized protein n=1 Tax=Erysiphe neolycope... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180991contigH-elongata_contig180991:550..1065 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size516
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.6456835-CDS-H-elongata_contig180991:549..10651622930043.6456835-CDS-H-elongata_contig180991:549..1065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180991 550..1065 +
1691679258.931172-CDS-H-elongata_contig180991:549..10651691679258.931172-CDS-H-elongata_contig180991:549..1065Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180991 550..1065 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180991.4832.1prot_H-elongata_contig180991.4832.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180991 550..1065 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180991.4832.1

>prot_H-elongata_contig180991.4832.1 ID=prot_H-elongata_contig180991.4832.1|Name=mRNA_H-elongata_contig180991.4832.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp
QGNPNFLSSVLALGDNWAESIEALSSADLSRFPAGWIRHVKLGELSEKAR
NRLALGAAGHRYTSALKFLRPADFIQGRAGVATFVAGIRAWTKDRVWWDL
HPITKSGNIITVTGSLNKLIEDCLHTCVNEARLGELSRARILHHVPGAVP
THSNWNGFDLSALPPLTSPIF*
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mRNA from alignment at H-elongata_contig180991:550..1065+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180991.4832.1 ID=mRNA_H-elongata_contig180991.4832.1|Name=mRNA_H-elongata_contig180991.4832.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at H-elongata_contig180991:550..1065+ (Himanthalia elongata Himel1 dioecious)
CAAGGGAACCCAAATTTCCTGTCTAGTGTTCTCGCCCTGGGCGACAATTG GGCGGAATCAATAGAAGCCTTGTCATCAGCAGACCTTTCGAGGTTTCCCG CCGGATGGATAAGGCACGTCAAGCTTGGTGAGCTTTCCGAGAAGGCCAGG AACCGCCTTGCGCTCGGTGCCGCAGGACACAGGTACACTTCTGCGTTGAA GTTCCTTCGTCCTGCGGATTTCATACAGGGCCGCGCAGGCGTAGCCACAT TTGTTGCTGGGATAAGAGCATGGACCAAAGACAGGGTGTGGTGGGACCTG CATCCGATTACGAAGAGTGGGAACATCATAACAGTCACAGGCTCCTTGAA CAAGCTCATAGAGGACTGTTTGCACACATGTGTCAATGAGGCACGCCTTG GTGAGCTCTCCAGGGCACGCATCCTGCACCACGTGCCCGGTGCTGTACCG ACCCATTCAAACTGGAACGGGTTTGATCTGAGCGCACTGCCCCCTTTGAC GAGCCCCATATTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig180991:550..1065+

>mRNA_H-elongata_contig180991.4832.1 ID=mRNA_H-elongata_contig180991.4832.1|Name=mRNA_H-elongata_contig180991.4832.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig180991:550..1065+ (Himanthalia elongata Himel1 dioecious)
CAAGGGAACCCAAATTTCCTGTCTAGTGTTCTCGCCCTGGGCGACAATTG
GGCGGAATCAATAGAAGCCTTGTCATCAGCAGACCTTTCGAGGTTTCCCG
CCGGATGGATAAGGCACGTCAAGCTTGGTGAGCTTTCCGAGAAGGCCAGG
AACCGCCTTGCGCTCGGTGCCGCAGGACACAGGTACACTTCTGCGTTGAA
GTTCCTTCGTCCTGCGGATTTCATACAGGGCCGCGCAGGCGTAGCCACAT
TTGTTGCTGGGATAAGAGCATGGACCAAAGACAGGGTGTGGTGGGACCTG
CATCCGATTACGAAGAGTGGGAACATCATAACAGTCACAGGCTCCTTGAA
CAAGCTCATAGAGGACTGTTTGCACACATGTGTCAATGAGGCACGCCTTG
GTGAGCTCTCCAGGGCACGCATCCTGCACCACGTGCCCGGTGCTGTACCG
ACCCATTCAAACTGGAACGGGTTTGATCTGAGCGCACTGCCCCCTTTGAC
GAGCCCCATATTCTGACAAGGGAACCCAAATTTCCTGTCTAGTGTTCTCG
CCCTGGGCGACAATTGGGCGGAATCAATAGAAGCCTTGTCATCAGCAGAC
CTTTCGAGGTTTCCCGCCGGATGGATAAGGCACGTCAAGCTTGGTGAGCT
TTCCGAGAAGGCCAGGAACCGCCTTGCGCTCGGTGCCGCAGGACACAGGT
ACACTTCTGCGTTGAAGTTCCTTCGTCCTGCGGATTTCATACAGGGCCGC
GCAGGCGTAGCCACATTTGTTGCTGGGATAAGAGCATGGACCAAAGACAG
GGTGTGGTGGGACCTGCATCCGATTACGAAGAGTGGGAACATCATAACAG
TCACAGGCTCCTTGAACAAGCTCATAGAGGACTGTTTGCACACATGTGTC
AATGAGGCACGCCTTGGTGAGCTCTCCAGGGCACGCATCCTGCACCACGT
GCCCGGTGCTGTACCGACCCATTCAAACTGGAACGGGTTTGATCTGAGCG
CACTGCCCCCTTTGACGAGCCCCATATTCTGA
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