mRNA_H-elongata_contig180819.4826.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180819.4826.1
Unique NamemRNA_H-elongata_contig180819.4826.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig180819.4826.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 6.750e-53
Identity = 106/251 (42.23%), Postives = 153/251 (60.96%), Query Frame = 1
Query:   34 SLLKPCATRGCDVIGLQETKRDGHSEITASEYRVYFSGDCTGDKGKKGQHGIGLAMKEEIVNKAGKDDIAIECISARLLKARISI-KSNFVTFVVAYAPTE--EATDG----EKDKYIAVLNSTVSSVSAREYVFILTDANSKTGEKGEGGGDAESKVLGAYGRGVLNENGXXXX-----------NTFFSTPKNGVSYTFQSANRIKGQAHLDYILTKQVDRRLVHGVNVRPPSLKAQESDSNLVYAKVR 732
            ++++ C+  GCDVIGLQET+R+G   I    Y + +SG   G K K+G HG+G+A+KE +    G++   +ECIS RL+K R+ I ++  VTFVV YAPTE    T G     KD +   L++ +  V +R+++ +L DAN++TG +   GG  ++KVLGAYGR ++N NG               NT+F TPK GV +TFQS+N+ K +  LD+IL +Q DRR V  V+V+    K  +SD NLV   VR
Sbjct:    2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFK--DSDHNLVLTTVR 248          
BLAST of mRNA_H-elongata_contig180819.4826.1 vs. uniprot
Match: A0A6H5K259_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K259_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 1.210e-50
Identity = 103/251 (41.04%), Postives = 151/251 (60.16%), Query Frame = 1
Query:   34 SLLKPCATRGCDVIGLQETKRDGHSEITASEYRVYFSGDCTGDKGKKGQHGIGLAMKEEIVNKAGKDDIAIECISARLLKARISI-KSNFVTFVVAYAPTE--EATDG----EKDKYIAVLNSTVSSVSAREYVFILTDANSKTGEKGEGGGDAESKVLGAYGRGVLNENGXXXX-----------NTFFSTPKNGVSYTFQSANRIKGQAHLDYILTKQVDRRLVHGVNVRPPSLKAQESDSNLVYAKVR 732
            ++++ C+  GCDVIGLQET+R+G   +    Y + +SG   G K K+G HG+G+A+KE +    G+    +ECI+ RL+K R+ I ++  VTFVV YAPTE    T G     KD +   L+  +  V +R+++ +L DAN++TG + +G  DA  K++GAYGR ++N NG               NT+F TPK GV +TFQS+N+ K +  LD+IL +Q DRR V  V+V+    K  +SD NLV   VR
Sbjct:    2 TVMQLCSATGCDVIGLQETRREGQGSLAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEKGRTVECINPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDGEIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASGNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFK--DSDHNLVLTTVR 248          
BLAST of mRNA_H-elongata_contig180819.4826.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 3.620e-50
Identity = 109/259 (42.08%), Postives = 158/259 (61.00%), Query Frame = 1
Query:   13 NGIGH-IDSLLKPCATRGCDVIGLQETKRDGHSEITASEYRVYFSGDCTGDKGKKGQHGIGLAMKEEIVNKAGKDDIAIECISARLLKARISI-KSNFVTFVVAYAPTE--EATDG----EKDKYIAVLNSTVSSVSAREYVFILTDANSKTGEKGEGGGDAESKVLGAYGRGVLNENGXXXX-----------NTFFSTPKNGVSYTFQSANRIKGQAHLDYILTKQVDRRLVHGVNVRPPSLKAQESDSNLVYAKVR 732
            N IGH + ++++ C+  GCDVIGLQET+R+G   I    Y + +SG   G K K+G HG+G+A+KE +    G++   +ECIS RL+K R+ I ++  VTFVV YAPTE    T G     KD +   L++ +  V +R+++ +L DAN++TG + +G  DA  K++GAYGR ++N NG               NT+F TPK GV +TFQS+N+ K +  LD+IL +Q DRR V  V+V+    K  +SD NLV   VR
Sbjct:  673 NPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFK--DSDHNLVLTTVR 927          
BLAST of mRNA_H-elongata_contig180819.4826.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 4.760e-50
Identity = 106/259 (40.93%), Postives = 154/259 (59.46%), Query Frame = 1
Query:   13 NGIGH-IDSLLKPCATRGCDVIGLQETKRDGHSEITASEYRVYFSGDCTGDKGKKGQHGIGLAMKEEIVNKAGKDDIAIECISARLLKARISI-KSNFVTFVVAYAPTE--EATDG----EKDKYIAVLNSTVSSVSAREYVFILTDANSKTGEKGEGGGDAESKVLGAYGRGVLNENGXXXX-----------NTFFSTPKNGVSYTFQSANRIKGQAHLDYILTKQVDRRLVHGVNVRPPSLKAQESDSNLVYAKVR 732
            N IGH + ++++ C+  GCDVIGLQET+R G   I    Y + +SG   G K K+G HG+G+ +KE +    G++   +ECI  RL+K R+ I ++  V FVV YAPTE    T G     KD +   L++ +  V +R+++ +L DAN++TG + +G  DA  K++GAYGR ++N NG               NT+F TPK GV +TFQS+N+ K +  LD+IL +Q DRR V  V+V+    K  +SD NLV   VR
Sbjct:   97 NPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFK--DSDHNLVLTTVR 351          
BLAST of mRNA_H-elongata_contig180819.4826.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 1.190e-49
Identity = 106/259 (40.93%), Postives = 156/259 (60.23%), Query Frame = 1
Query:   13 NGIGH-IDSLLKPCATRGCDVIGLQETKRDGHSEITASEYRVYFSGDCTGDKGKKGQHGIGLAMKEEIVNKAGKDDIAIECISARLLKARISI-KSNFVTFVVAYAPTE--EATDG----EKDKYIAVLNSTVSSVSAREYVFILTDANSKTGEKGEGGGDAESKVLGAYGRGVLNENGXXXX-----------NTFFSTPKNGVSYTFQSANRIKGQAHLDYILTKQVDRRLVHGVNVRPPSLKAQESDSNLVYAKVR 732
            N IGH + ++++ C+  GCDVIGLQET+R G   I    Y + +SG   G K K+G HG+G+A+KE +    G++   +ECIS RL+K R+ I ++  VTF+V YAPTE    T+G     KD +   L++ +  V +R+++ +L DAN++TG + +G  DA  K++GAYGR ++N NG               NT+F TPK GV +TFQS+N+ K +  LD+I  +Q DRR V  V+V+    K  +SD  LV   VR
Sbjct:  191 NPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFIFMRQADRRFVRNVSVKRVDFK--DSDHKLVLTTVR 445          
BLAST of mRNA_H-elongata_contig180819.4826.1 vs. uniprot
Match: A0A6H5L7A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A7_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 5.120e-49
Identity = 105/251 (41.83%), Postives = 153/251 (60.96%), Query Frame = 1
Query:   34 SLLKPCATRGCDVIGLQETKRDGHSEITASEYRVYFSGDCTGDKGKKGQHGIGLAMKEEIVNKAGKDDIAIECISARLLKARISI-KSNFVTFVVAYAPTE--EATDG----EKDKYIAVLNSTVSSVSAREYVFILTDANSKTGEKGEGGGDAESKVLGAYGRGVLNENGXXXX-----------NTFFSTPKNGVSYTFQSANRIKGQAHLDYILTKQVDRRLVHGVNVRPPSLKAQESDSNLVYAKVR 732
            ++++ C+  GCDVIGLQET+R+G   I    Y + +SG   G K K+G HG+G+A+KE +    G++   +ECIS RL+K R+ I ++  VTFVV YAPTE    T G     KD +   L++ +  V +R+++ +L DAN++TG + +G  DA  K++GAYGR ++N NG               NT+F TPK GV +TFQS+N+ K +  LD+IL +Q DRR V  V+V+    K  +SD NLV   VR
Sbjct:    2 TVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVRNVSVKRVDFK--DSDHNLVLTTVR 248          
BLAST of mRNA_H-elongata_contig180819.4826.1 vs. uniprot
Match: A0A6H5KSV0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSV0_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 1.260e-48
Identity = 102/251 (40.64%), Postives = 150/251 (59.76%), Query Frame = 1
Query:   34 SLLKPCATRGCDVIGLQETKRDGHSEITASEYRVYFSGDCTGDKGKKGQHGIGLAMKEEIVNKAGKDDIAIECISARLLKARISI-KSNFVTFVVAYAPTE--EATDG----EKDKYIAVLNSTVSSVSAREYVFILTDANSKTGEKGEGGGDAESKVLGAYGRGVLNENGXXXX-----------NTFFSTPKNGVSYTFQSANRIKGQAHLDYILTKQVDRRLVHGVNVRPPSLKAQESDSNLVYAKVR 732
            ++++ C+  GCDV GLQET+R+G   I    Y + +SG   G K K+G HG+G+A+KE +    G++   +ECIS RL+K R+ I ++  VTFV+ YAPTE    T G     KD +   L++ +  V +R+++ +L DAN++TG + +G  DA  K++GAYGR ++N NG               NT+F TPK G  +TFQS+N  K +  LD+IL +Q DRR V  V+V+    K  +SD NLV   VR
Sbjct:    2 TVMQICSATGCDVTGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVMGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGAQHTFQSSNTGKEKYRLDFILMRQTDRRFVRDVSVKRVDFK--DSDHNLVLTTVR 248          
BLAST of mRNA_H-elongata_contig180819.4826.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.610e-48
Identity = 107/259 (41.31%), Postives = 154/259 (59.46%), Query Frame = 1
Query:   13 NGIGH-IDSLLKPCATRGCDVIGLQETKRDGHSEITASEYRVYFSGDCTGDKGKKGQHGIGLAMKEEIVNKAGKDDIAIECISARLLKARISI-KSNFVTFVVAYAPTE--EATDG----EKDKYIAVLNSTVSSVSAREYVFILTDANSKTGEKGEGGGDAESKVLGAYGRGVLNENGXXXX-----------NTFFSTPKNGVSYTFQSANRIKGQAHLDYILTKQVDRRLVHGVNVRPPSLKAQESDSNLVYAKVR 732
            N IGH + ++++ C+  GCDVIGLQET+R G   I    Y + +SG   G K K+G HG+G+A+KE +    G++   +ECIS RL+K R+ I ++  VTFVV YAPTE    T G     KD +   L++ +  V +R+++ +L DAN++TG + +G  DA  K++GAYGR ++N NG               NT+  TPK GV +TFQS+N+ K +  LD IL +Q DRR V  V+V+    K  + D NLV   VR
Sbjct:  102 NPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPKGGVQHTFQSSNKGKEKYRLDLILMRQTDRRFVRNVSVKCVDFK--DPDHNLVLTTVR 356          
BLAST of mRNA_H-elongata_contig180819.4826.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 2.440e-47
Identity = 106/259 (40.93%), Postives = 155/259 (59.85%), Query Frame = 1
Query:   13 NGIGH-IDSLLKPCATRGCDVIGLQETKRDGHSEITASEYRVYFSGDCTGDKGKKGQHGIGLAMKEEIVNKAGKDDIAIECISARLLKARISI-KSNFVTFVVAYAPTEEA--TDG----EKDKYIAVLNSTVSSVSAREYVFILTDANSKTGEKGEGGGDAESKVLGAYGRGVLNENGXXXX-----------NTFFSTPKNGVSYTFQSANRIKGQAHLDYILTKQVDRRLVHGVNVRPPSLKAQESDSNLVYAKVR 732
            N IGH +  +++  +  GCDVIGLQET+R+G   I    Y + +SG   G K K+G+ G+G+A+KE +    G++   +ECIS RL+K R+ I ++  VTFVV YAPTE    T G     KD +   L++ +  V +R+++ +L DAN++TG + +G  DA  K++GAYGR ++N NG               NT+F TPK GV +TFQ +N+ K +  LD+IL +Q DRR V  V+V+    K  +SD NLV   VR
Sbjct:  171 NPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCCDA--KIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQCSNKGKEKYRLDFILMRQTDRRFVRNVSVKRVDFK--DSDHNLVLTTVR 425          
BLAST of mRNA_H-elongata_contig180819.4826.1 vs. uniprot
Match: A0A6H5JUC3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC3_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 3.090e-47
Identity = 104/246 (42.28%), Postives = 149/246 (60.57%), Query Frame = 1
Query:   49 CATRGCDVIGLQETKRDGHSEITASEYRVYFSGDCTGDKGKKGQHGIGLAMKEEIVNKAGKDDIAIECISARLLKARISI-KSNFVTFVVAYAPTE--EATDG----EKDKYIAVLNSTVSSVSAREYVFILTDANSKTGEKGEGGGDAESKVLGAYGRGVLNENGXXXX-----------NTFFSTPKNGVSYTFQSANRIKGQAHLDYILTKQVDRRLVHGVNVRPPSLKAQESDSNLVYAKVR 732
            C+  GCDVIGLQET+R+G   I    Y + +SG   G K K+G HG+G+A+KE +    G++   +ECIS RL+K R+ I ++  VTFVV YAPTE    T G     +D +   L++ +  V +R+++ +L DAN++TG + +G  DA  K++GAYGR + N+NG               NT+F TPK GV +TFQS+N+ K +  LD+IL +Q DRR V  V+V+    K  +SD NLV   VR
Sbjct:  136 CSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVDAEDSFWTALDAAIWEVHSRDHLGVLMDANARTGRRRDGCCDA--KIMGAYGRDITNKNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYRLDFILMRQADRRFVRNVSVKRVDFK--DSDHNLVLTTVR 377          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180819.4826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBZ6_9PHAE6.750e-5342.23Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K259_9PHAE1.210e-5041.04Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K1H7_9PHAE3.620e-5042.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KV75_9PHAE4.760e-5040.93Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5K3Q1_9PHAE1.190e-4940.93Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7A7_9PHAE5.120e-4941.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSV0_9PHAE1.260e-4840.64Endo/exonuclease/phosphatase domain-containing pro... [more]
A0A6H5JMB4_9PHAE1.610e-4841.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JVN7_9PHAE2.440e-4740.93Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JUC3_9PHAE3.090e-4742.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180819contigH-elongata_contig180819:10..741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score75.1
Seed ortholog evalue5.1e-11
Seed eggNOG ortholog7668.SPU_020204-tr
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs39TZY@33154,3BHR3@33208,3CUIP@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size732
Cds size732
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930043.1384802-CDS-H-elongata_contig180819:9..7411622930043.1384802-CDS-H-elongata_contig180819:9..741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180819 10..741 +
1691679258.7389421-CDS-H-elongata_contig180819:9..7411691679258.7389421-CDS-H-elongata_contig180819:9..741Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180819 10..741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180819.4826.1prot_H-elongata_contig180819.4826.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180819 10..741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180819.4826.1

>prot_H-elongata_contig180819.4826.1 ID=prot_H-elongata_contig180819.4826.1|Name=mRNA_H-elongata_contig180819.4826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=244bp
VNSVNGIGHIDSLLKPCATRGCDVIGLQETKRDGHSEITASEYRVYFSGD
CTGDKGKKGQHGIGLAMKEEIVNKAGKDDIAIECISARLLKARISIKSNF
VTFVVAYAPTEEATDGEKDKYIAVLNSTVSSVSAREYVFILTDANSKTGE
KGEGGGDAESKVLGAYGRGVLNENGXXXXNTFFSTPKNGVSYTFQSANRI
KGQAHLDYILTKQVDRRLVHGVNVRPPSLKAQESDSNLVYAKVR
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mRNA from alignment at H-elongata_contig180819:10..741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180819.4826.1 ID=mRNA_H-elongata_contig180819.4826.1|Name=mRNA_H-elongata_contig180819.4826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=732bp|location=Sequence derived from alignment at H-elongata_contig180819:10..741+ (Himanthalia elongata Himel1 dioecious)
GTTAACAGCGTCAACGGCATTGGTCATATCGACTCCCTTTTAAAGCCCTG TGCTACGAGAGGGTGTGATGTTATTGGACTGCAGGAGACAAAACGGGACG GACATTCTGAAATAACTGCATCTGAATACCGGGTCTATTTCAGTGGTGAC TGCACTGGAGACAAAGGGAAGAAAGGGCAACATGGGATCGGACTAGCGAT GAAGGAGGAGATCGTTAATAAGGCCGGCAAGGACGATATCGCAATCGAGT GCATCAGCGCACGTCTCCTGAAGGCTCGAATATCGATAAAATCTAATTTT GTTACGTTTGTGGTAGCCTACGCTCCGACCGAGGAAGCAACGGATGGGGA GAAGGACAAGTATATTGCAGTCCTCAACAGCACCGTATCCTCAGTGTCCG CTCGGGAATACGTCTTCATTTTGACCGACGCAAATTCCAAGACAGGGGAA AAGGGTGAGGGAGGCGGAGACGCAGAAAGCAAGGTATTGGGCGCATATGG CCGAGGCGTGCTCAACGAAAACGGGNNNNNNNNNNTGAACACCTTTTTTA GCACCCCCAAAAATGGCGTGTCGTACACATTCCAAAGCGCCAATCGCATC AAGGGGCAAGCCCATCTAGATTACATTTTGACAAAGCAGGTGGACCGTAG ATTGGTTCACGGCGTTAATGTCCGCCCACCCTCTCTAAAGGCACAAGAGT CGGATTCAAATCTCGTCTACGCAAAGGTCCGC
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Coding sequence (CDS) from alignment at H-elongata_contig180819:10..741+

>mRNA_H-elongata_contig180819.4826.1 ID=mRNA_H-elongata_contig180819.4826.1|Name=mRNA_H-elongata_contig180819.4826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1464bp|location=Sequence derived from alignment at H-elongata_contig180819:10..741+ (Himanthalia elongata Himel1 dioecious)
GTTAACAGCGTCAACGGCATTGGTCATATCGACTCCCTTTTAAAGCCCTG
TGCTACGAGAGGGTGTGATGTTATTGGACTGCAGGAGACAAAACGGGACG
GACATTCTGAAATAACTGCATCTGAATACCGGGTCTATTTCAGTGGTGAC
TGCACTGGAGACAAAGGGAAGAAAGGGCAACATGGGATCGGACTAGCGAT
GAAGGAGGAGATCGTTAATAAGGCCGGCAAGGACGATATCGCAATCGAGT
GCATCAGCGCACGTCTCCTGAAGGCTCGAATATCGATAAAATCTAATTTT
GTTACGTTTGTGGTAGCCTACGCTCCGACCGAGGAAGCAACGGATGGGGA
GAAGGACAAGTATATTGCAGTCCTCAACAGCACCGTATCCTCAGTGTCCG
CTCGGGAATACGTCTTCATTTTGACCGACGCAAATTCCAAGACAGGGGAA
AAGGGTGAGGGAGGCGGAGACGCAGAAAGCAAGGTATTGGGCGCATATGG
CCGAGGCGTGCTCAACGAAAACGGGNNNNNNNNNNTGAACACCTTTTTTA
GCACCCCCAAAAATGGCGTGTCGTACACATTCCAAAGCGCCAATCGCATC
AAGGGGCAAGCCCATCTAGATTACATTTTGACAAAGCAGGTGGACCGTAG
ATTGGTTCACGGCGTTAATGTCCGCCCACCCTCTCTAAAGGCACAAGAGT
CGGATTCAAATCTCGTCTACGCAAAGGTCCGCGTTAACAGCGTCAACGGC
ATTGGTCATATCGACTCCCTTTTAAAGCCCTGTGCTACGAGAGGGTGTGA
TGTTATTGGACTGCAGGAGACAAAACGGGACGGACATTCTGAAATAACTG
CATCTGAATACCGGGTCTATTTCAGTGGTGACTGCACTGGAGACAAAGGG
AAGAAAGGGCAACATGGGATCGGACTAGCGATGAAGGAGGAGATCGTTAA
TAAGGCCGGCAAGGACGATATCGCAATCGAGTGCATCAGCGCACGTCTCC
TGAAGGCTCGAATATCGATAAAATCTAATTTTGTTACGTTTGTGGTAGCC
TACGCTCCGACCGAGGAAGCAACGGATGGGGAGAAGGACAAGTATATTGC
AGTCCTCAACAGCACCGTATCCTCAGTGTCCGCTCGGGAATACGTCTTCA
TTTTGACCGACGCAAATTCCAAGACAGGGGAAAAGGGTGAGGGAGGCGGA
GACGCAGAAAGCAAGGTATTGGGCGCATATGGCCGAGGCGTGCTCAACGA
AAACGGGNNNNNNNNNNTGAACACCTTTTTTAGCACCCCCAAAAATGGCG
TGTCGTACACATTCCAAAGCGCCAATCGCATCAAGGGGCAAGCCCATCTA
GATTACATTTTGACAAAGCAGGTGGACCGTAGATTGGTTCACGGCGTTAA
TGTCCGCCCACCCTCTCTAAAGGCACAAGAGTCGGATTCAAATCTCGTCT
ACGCAAAGGTCCGC
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