mRNA_H-elongata_contig180785.4824.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180785.4824.1
Unique NamemRNA_H-elongata_contig180785.4824.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180785.4824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180785contigH-elongata_contig180785:48..764 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size717
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180785.4824.1prot_H-elongata_contig180785.4824.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180785 234..629 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930042.7460694-UTR-H-elongata_contig180785:47..2331622930042.7460694-UTR-H-elongata_contig180785:47..233Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig180785 48..233 +
1691679258.5550358-UTR-H-elongata_contig180785:47..2331691679258.5550358-UTR-H-elongata_contig180785:47..233Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig180785 48..233 +
1622930042.7736108-UTR-H-elongata_contig180785:629..7641622930042.7736108-UTR-H-elongata_contig180785:629..764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig180785 630..764 +
1691679258.570614-UTR-H-elongata_contig180785:629..7641691679258.570614-UTR-H-elongata_contig180785:629..764Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig180785 630..764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930042.7613447-CDS-H-elongata_contig180785:233..6291622930042.7613447-CDS-H-elongata_contig180785:233..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180785 234..629 +
1691679258.562698-CDS-H-elongata_contig180785:233..6291691679258.562698-CDS-H-elongata_contig180785:233..629Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180785 234..629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180785.4824.1

>prot_H-elongata_contig180785.4824.1 ID=prot_H-elongata_contig180785.4824.1|Name=mRNA_H-elongata_contig180785.4824.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
MSGFVSYPVPKNELNAGDATRDDLREEGGSDGGREVTRRKPTGFLLSSRH
FIHSLWQTASPRGRYTTGEETRQNPLYRVRKKTAWTPQAAPIKPSPLSSA
HSPILGKRRSSNTRQGTCIKIHQTHTHTFQR*
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mRNA from alignment at H-elongata_contig180785:48..764+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180785.4824.1 ID=mRNA_H-elongata_contig180785.4824.1|Name=mRNA_H-elongata_contig180785.4824.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=717bp|location=Sequence derived from alignment at H-elongata_contig180785:48..764+ (Himanthalia elongata Himel1 dioecious)
AGGGGACACTGAGCGAAAACCAGCCAATCAGCAACGGCAGGAACTTGAGC
ACCTGGTGCGCGCCAGACAGAGTCGGGGCGACGGCAGCAGGCGTTAAACG
AGGTCGGGGAGGACGGCTGCGCACGCCTTGACGCGTGTTTCAGCCGGCTG
AATCGACCAGAAGTAGACGAATCGATCCATACAGTGATGTCAGGATTCGT
CAGTTACCCCGTGCCAAAAAATGAACTGAATGCAGGGGATGCTACACGGG
ACGATCTGAGAGAGGAAGGAGGGAGCGACGGAGGGAGGGAAGTCACACGC
AGGAAACCCACAGGCTTTCTGTTGTCTTCCAGACATTTTATTCACAGTCT
CTGGCAGACGGCCTCCCCACGCGGCCGGTACACAACGGGAGAAGAAACGA
GGCAAAATCCACTATACAGAGTCCGAAAAAAGACGGCGTGGACGCCGCAA
GCGGCGCCGATAAAACCATCACCCCTATCCTCCGCTCACTCTCCGATTCT
TGGGAAAAGGCGTTCGTCAAATACTCGGCAAGGTACATGCATTAAAATAC
ATCAAACACATACACACACATTTCAACGTTAAGTGACGCAAGCAGTGTGA
TATGGAAACGGTCGTATTATGACAGGCTCGCTGCGCTCGCATTTTGAGAA
GCTTGCTGCGATTCGTCCACGGGGCGTTAGGGTCTTTGACCGGCTGCATG
ATCTTCATCGACACCGC
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Coding sequence (CDS) from alignment at H-elongata_contig180785:48..764+

>mRNA_H-elongata_contig180785.4824.1 ID=mRNA_H-elongata_contig180785.4824.1|Name=mRNA_H-elongata_contig180785.4824.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig180785:48..764+ (Himanthalia elongata Himel1 dioecious)
ATGTCAGGATTCGTCAGTTACCCCGTGCCAAAAAATGAACTGAATGCAGG
GGATGCTACACGGGACGATCTGAGAGAGGAAGGAGGGAGCGACGGAGGGA
GGGAAGTCACACGCAGGAAACCCACAGGCTTTCTGTTGTCTTCCAGACAT
TTTATTCACAGTCTCTGGCAGACGGCCTCCCCACGCGGCCGGTACACAAC
GGGAGAAGAAACGAGGCAAAATCCACTATACAGAGTCCGAAAAAAGACGG
CGTGGACGCCGCAAGCGGCGCCGATAAAACCATCACCCCTATCCTCCGCT
CACTCTCCGATTCTTGGGAAAAGGCGTTCGTCAAATACTCGGCAAGGTAC
ATGCATTAAAATACATCAAACACATACACACACATTTCAACGTTAAATGT
CAGGATTCGTCAGTTACCCCGTGCCAAAAAATGAACTGAATGCAGGGGAT
GCTACACGGGACGATCTGAGAGAGGAAGGAGGGAGCGACGGAGGGAGGGA
AGTCACACGCAGGAAACCCACAGGCTTTCTGTTGTCTTCCAGACATTTTA
TTCACAGTCTCTGGCAGACGGCCTCCCCACGCGGCCGGTACACAACGGGA
GAAGAAACGAGGCAAAATCCACTATACAGAGTCCGAAAAAAGACGGCGTG
GACGCCGCAAGCGGCGCCGATAAAACCATCACCCCTATCCTCCGCTCACT
CTCCGATTCTTGGGAAAAGGCGTTCGTCAAATACTCGGCAAGGTACATGC
ATTAAAATACATCAAACACATACACACACATTTCAACGTTAA
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