mRNA_H-elongata_contig18072.4820.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig18072.4820.1 vs. uniprot
Match: D7FVL6_ECTSI (Hypothetical leucine rich repeat and GCG domain-containing receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVL6_ECTSI) HSP 1 Score: 382 bits (981), Expect = 3.090e-118 Identity = 320/495 (64.65%), Postives = 377/495 (76.16%), Query Frame = 1
Query: 22 PPVVGNEVRRLDVLDVSNNIGISGILPESYSVLQMLFADDTALSGSQLPLFVD-TASGSRYKWK-----HNESVCGSIEPSPDEEIVAIALDPSYDNFSLCTCDNGFESSRGS--CTKCSRGWYRGVDQDD--INFEMCVACPPNSTTLLNGSWLKGQCVCLVNFYDEQGGYGPGPSXXXXXXXXXXXXXXXXNVASCKCEQGYILDVTVSECKACLAGKYKPVYGNQAELCLPCPAGTSSDEIGASSSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGQQVADEGSSQCSSEVSQDGTLIGLYLLIAGIILVVLTLVWVFLQKYFGTEVPVTEKVHMKLNEEMKTFIYGQHSTPPHRVAIHRDWNSLFSVVEILDLMSDLGAYASLLYTAALTGAMKIVYTVVVAFALTASLHGVQTRAIIILEMHEERTHGLAI 1476
P VV + RR+D+LDVS+N G +P SYS L +LFA++T LSG LP F+D T + + W H+ VC + +PS DE + A+ LD +YD +S+CTC++G + S G C++C G YR ++++D + +C CP NSTT+ NGSWLK QCVC +NFYDEQGG PSXXXXXXXXXXXXXX N+ASC+CE G I + T C++C+AG YKP YGN LCLPC AGT SD +GA+S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX QVA+EGS++C+ E S+DGTLIGLYLLIAGIILVV TLV VFLQK+ G +PV EKVHMKLNEEMK+FIYGQ + W SLFS VEI+DLMSDLGAYASLLYTAALTGAMK+VYT+VVAFAL ASLHGV TRA+IIL+M E +H + +
Sbjct: 252 PRVVDTDNRRIDLLDVSDNGNFVGEVPASYSELLILFAENTGLSGLDLPDFIDATTTTAAGAWNEKSTVHDLFVCPAFKPSADENVAAVTLDHAYDGYSVCTCNDGLQGSGGDSECSECPLGSYRNLEKEDDPLAEGVCSPCPSNSTTMQNGSWLKSQCVCAINFYDEQGGADSEPSXXXXXXXXXXXXXXAVNIASCECEPGRIFNTTSRACESCVAGTYKPAYGNHVGLCLPCSAGTYSDTVGATSQYDCEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD-NQVANEGSAECTDEFSEDGTLIGLYLLIAGIILVVFTLVGVFLQKHCGDAIPVKEKVHMKLNEEMKSFIYGQ-----------QFWISLFSGVEIMDLMSDLGAYASLLYTAALTGAMKVVYTIVVAFALVASLHGVHTRAMIILDMQEYLSHHIGV 734
BLAST of mRNA_H-elongata_contig18072.4820.1 vs. uniprot
Match: L1IFY6_GUITC (EGF-like domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IFY6_GUITC) HSP 1 Score: 59.7 bits (143), Expect = 1.460e-5 Identity = 43/129 (33.33%), Postives = 59/129 (45.74%), Query Frame = 1
Query: 331 SRGSCTKCSRGWYRGVDQDDINFEMCVACPPNSTTLLNGSWLKGQC-VCLVNFYDEQGGYGPGPSXXXXXXXXXXXXXXXXNVASCKCEQGYILDVTVSECKACLAGKYKPVYGNQAELCLPCPAGTSS 714
SR +C+ C+ G+Y D CVACP ++ + LN L G C C N Q V C C++GY ++T C AC+AGKYK +YG+ + CLPCP G +S
Sbjct: 2096 SRFNCS-CASGFY------DTGNRSCVACPVSTVSSLN---LFGSCSFCPANMIKLQN--------------------QTDGVEYCACDRGY--EMTGGICSACVAGKYKDMYGD--DPCLPCPTGATS 2190 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18072.4820.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig18072.4820.1 >prot_H-elongata_contig18072.4820.1 ID=prot_H-elongata_contig18072.4820.1|Name=mRNA_H-elongata_contig18072.4820.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=527bp MHVKGKLPPVVGNEVRRLDVLDVSNNIGISGILPESYSVLQMLFADDTALback to top mRNA from alignment at H-elongata_contig18072:758..4823- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig18072.4820.1 ID=mRNA_H-elongata_contig18072.4820.1|Name=mRNA_H-elongata_contig18072.4820.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4066bp|location=Sequence derived from alignment at H-elongata_contig18072:758..4823- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig18072:758..4823- >mRNA_H-elongata_contig18072.4820.1 ID=mRNA_H-elongata_contig18072.4820.1|Name=mRNA_H-elongata_contig18072.4820.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3162bp|location=Sequence derived from alignment at H-elongata_contig18072:758..4823- (Himanthalia elongata Himel1 dioecious)back to top |