mRNA_H-elongata_contig18069.4816.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18069.4816.1
Unique NamemRNA_H-elongata_contig18069.4816.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18069.4816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18069contigH-elongata_contig18069:4836..5335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size472
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18069.4816.1prot_H-elongata_contig18069.4816.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18069 4927..5299 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930042.082125-UTR-H-elongata_contig18069:4835..49261622930042.082125-UTR-H-elongata_contig18069:4835..4926Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18069 4836..4926 +
1691679258.3091006-UTR-H-elongata_contig18069:4835..49261691679258.3091006-UTR-H-elongata_contig18069:4835..4926Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18069 4836..4926 +
1622930042.2059062-UTR-H-elongata_contig18069:5299..53351622930042.2059062-UTR-H-elongata_contig18069:5299..5335Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18069 5300..5335 +
1691679258.3424308-UTR-H-elongata_contig18069:5299..53351691679258.3424308-UTR-H-elongata_contig18069:5299..5335Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18069 5300..5335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930042.1731956-CDS-H-elongata_contig18069:4926..50931622930042.1731956-CDS-H-elongata_contig18069:4926..5093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18069 4927..5093 +
1691679258.321101-CDS-H-elongata_contig18069:4926..50931691679258.321101-CDS-H-elongata_contig18069:4926..5093Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18069 4927..5093 +
1622930042.1911762-CDS-H-elongata_contig18069:5121..52991622930042.1911762-CDS-H-elongata_contig18069:5121..5299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18069 5122..5299 +
1691679258.330564-CDS-H-elongata_contig18069:5121..52991691679258.330564-CDS-H-elongata_contig18069:5121..5299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18069 5122..5299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18069.4816.1

>prot_H-elongata_contig18069.4816.1 ID=prot_H-elongata_contig18069.4816.1|Name=mRNA_H-elongata_contig18069.4816.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MEGVYVVTKIHICRPPIVPCVSTRLGLEKVPLEEYKDNLKQMVAHLRRVQ
PKARLLCALLIRFWMPATNRERPSNLRVRVPVGSRRVNLSGSVKFFSCAL
ALHTVGHNGVTTLH*
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mRNA from alignment at H-elongata_contig18069:4836..5335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18069.4816.1 ID=mRNA_H-elongata_contig18069.4816.1|Name=mRNA_H-elongata_contig18069.4816.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=500bp|location=Sequence derived from alignment at H-elongata_contig18069:4836..5335+ (Himanthalia elongata Himel1 dioecious)
ATTTCATTAAAGCTATATTTTACGTGATAACTCTTCGTGCTCGAGAAGAT
ATGACACAAATGTCAAAATCATAAGGATACATACTTATGGGATGGAGGGA
GTATATGTTGTAACAAAAATACATATCTGCCGACCTCCAATCGTCCCCTG
CGTCTCGACTCGGCTCGGCTTGGAAAAAGTTCCCCTCGAGGAATACAAGG
ATAACCTGAAGCAGATGGTTGCACACCTGCGTCGGGTTCAACCGAAGGCG
AGACTACTGCTCATCACCCCTCCTGCCATCCACGAGGTGCGCTCTTCTTA
TACGCTTTTGGATGCCTGCCACAAATCGTGAACGTCCGTCAAACCTCCGC
GTGAGGGTTCCCGTTGGGAGTCGGCGCGTTAACCTGAGTGGCAGTGTTAA
ATTCTTTTCGTGCGCACTCGCACTTCACACTGTTGGGCATAACGGTGTTA
CGACACTACATTGATGTACTCTCTAGCTGTATGTTACACGAAAAATGCAT
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Coding sequence (CDS) from alignment at H-elongata_contig18069:4836..5335+

>mRNA_H-elongata_contig18069.4816.1 ID=mRNA_H-elongata_contig18069.4816.1|Name=mRNA_H-elongata_contig18069.4816.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig18069:4836..5335+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGGAGTATATGTTGTAACAAAAATACATATCTGCCGACCTCCAAT
CGTCCCCTGCGTCTCGACTCGGCTCGGCTTGGAAAAAGTTCCCCTCGAGG
AATACAAGGATAACCTGAAGCAGATGGTTGCACACCTGCGTCGGGTTCAA
CCGAAGGCGAGACTACTATGGAGGGAGTATATGTTGTAACAAAAATACAT
ATCTGCCGACCTCCAATCGTCCCCTGCGTCTCGACTCGGCTCGGCTTGGA
AAAAGTTCCCCTCGAGGAATACAAGGATAACCTGAAGCAGATGGTTGCAC
ACCTGCGTCGGGTTCAACCGAAGGCGAGACTACTGTGCGCTCTTCTTATA
CGCTTTTGGATGCCTGCCACAAATCGTGAACGTCCGTCAAACCTCCGCGT
GAGGGTTCCCGTTGGGAGTCGGCGCGTTAACCTGAGTGGCAGTGTTAAAT
TCTTTTCGTGCGCACTCGCACTTCACACTGTTGGGCATAACGGTGTTACG
ACACTACATTGAGTGCGCTCTTCTTATACGCTTTTGGATGCCTGCCACAA
ATCGTGAACGTCCGTCAAACCTCCGCGTGAGGGTTCCCGTTGGGAGTCGG
CGCGTTAACCTGAGTGGCAGTGTTAAATTCTTTTCGTGCGCACTCGCACT
TCACACTGTTGGGCATAACGGTGTTACGACACTACATTGA
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