mRNA_H-elongata_contig180647.4813.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180647.4813.1
Unique NamemRNA_H-elongata_contig180647.4813.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig180647.4813.1 vs. uniprot
Match: A0A6H5KLR8_9PHAE (Gal_mutarotas_2 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 5.120e-28
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 RWISEGGALDLVLLPGPTAGHVFRQYAEVTGKPDLPPLFSMGFHQCRWNYRDEQ 162
            RWISEGGALDLVLLPGPT G VF+QYAEVTGKP+LPP+FS+GFHQCRWNYRDEQ
Sbjct:  415 RWISEGGALDLVLLPGPTPGAVFKQYAEVTGKPELPPMFSLGFHQCRWNYRDEQ 468
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BLAST of mRNA_H-elongata_contig180647.4813.1 vs. uniprot
Match: UPI0018F56580 (neutral alpha-glucosidase C n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F56580)

HSP 1 Score: 89.7 bits (221), Expect = 1.300e-19
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 RWISEGGALDLVLLPGPTAGHVFRQYAEVTGKPDLPPLFSMGFHQCRWNYRDEQ 162
            RW+SEGG +D+ LL GPT   VF+QY  +TG P LPPLFS+G+HQCRWNY DEQ
Sbjct:  327 RWMSEGGIIDVFLLMGPTPSAVFQQYGRLTGPPALPPLFSLGYHQCRWNYEDEQ 380
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BLAST of mRNA_H-elongata_contig180647.4813.1 vs. uniprot
Match: A0A7S3PSF0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PSF0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.390e-19
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 RWISEGGALDLVLLPGPTAGHVFRQYAEVTGKPDLPPLFSMGFHQCRWNYRDEQ 162
            +W+SE G  DL + PGPT    F QYAEVTG   LPP+FS+ +HQCRWNYRDE+
Sbjct:   47 KWMSESGVFDLFIFPGPTPLATFSQYAEVTGTTPLPPMFSLAYHQCRWNYRDEK 100
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BLAST of mRNA_H-elongata_contig180647.4813.1 vs. uniprot
Match: A0A6I8NIX2_ORNAN (Gal_mutarotas_2 domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8NIX2_ORNAN)

HSP 1 Score: 88.6 bits (218), Expect = 3.310e-19
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 RWISEGGALDLVLLPGPTAGHVFRQYAEVTGKPDLPPLFSMGFHQCRWNYRDEQ 162
            RW+SEGG +D+ LL GPT   VF+QY  +TG P LPPLFS+G+HQCRWNY DE+
Sbjct:  167 RWMSEGGVIDVFLLMGPTPSAVFQQYGRLTGPPALPPLFSLGYHQCRWNYEDER 220
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BLAST of mRNA_H-elongata_contig180647.4813.1 vs. uniprot
Match: F7FUK3_ORNAN (Uncharacterized protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=F7FUK3_ORNAN)

HSP 1 Score: 88.6 bits (218), Expect = 3.310e-19
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 RWISEGGALDLVLLPGPTAGHVFRQYAEVTGKPDLPPLFSMGFHQCRWNYRDEQ 162
            RW+SEGG +D+ LL GPT   VF+QY  +TG P LPPLFS+G+HQCRWNY DE+
Sbjct:  128 RWMSEGGVIDVFLLMGPTPSAVFQQYGRLTGPPALPPLFSLGYHQCRWNYEDER 181
[Close]
BLAST of mRNA_H-elongata_contig180647.4813.1 vs. uniprot
Match: F7FUK7_ORNAN (Gal_mutarotas_2 domain-containing protein n=3 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=F7FUK7_ORNAN)

HSP 1 Score: 88.6 bits (218), Expect = 3.310e-19
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 RWISEGGALDLVLLPGPTAGHVFRQYAEVTGKPDLPPLFSMGFHQCRWNYRDEQ 162
            RW+SEGG +D+ LL GPT   VF+QY  +TG P LPPLFS+G+HQCRWNY DE+
Sbjct:  294 RWMSEGGVIDVFLLMGPTPSAVFQQYGRLTGPPALPPLFSLGYHQCRWNYEDER 347
[Close]
BLAST of mRNA_H-elongata_contig180647.4813.1 vs. uniprot
Match: A0A7L1NIN2_RHICY (GANC glucosidase (Fragment) n=1 Tax=Rhinopomastus cyanomelas TaxID=113115 RepID=A0A7L1NIN2_RHICY)

HSP 1 Score: 88.6 bits (218), Expect = 3.310e-19
Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 RWISEGGALDLVLLPGPTAGHVFRQYAEVTGKPDLPPLFSMGFHQCRWNYRDEQ 162
            RWISE G +D+ LL GPTA +VF+Q+A++TG   LPPLFS+G+HQCRWNY DEQ
Sbjct:  315 RWISESGIIDVFLLMGPTAFNVFKQFAQLTGTQALPPLFSLGYHQCRWNYEDEQ 368
[Close]
BLAST of mRNA_H-elongata_contig180647.4813.1 vs. uniprot
Match: UPI0010A853E7 (neutral alpha-glucosidase C isoform X1 n=5 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=UPI0010A853E7)

HSP 1 Score: 88.6 bits (218), Expect = 3.310e-19
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 1 
Query:    1 RWISEGGALDLVLLPGPTAGHVFRQYAEVTGKPDLPPLFSMGFHQCRWNYRDEQ 162
            RW+SEGG +D+ LL GPT   VF+QY  +TG P LPPLFS+G+HQCRWNY DE+
Sbjct:  335 RWMSEGGVIDVFLLMGPTPSAVFQQYGRLTGPPALPPLFSLGYHQCRWNYEDER 388
[Close]
BLAST of mRNA_H-elongata_contig180647.4813.1 vs. uniprot
Match: A0A0D2M7S4_9CHLO (Glucosidase, alpha n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M7S4_9CHLO)

HSP 1 Score: 82.4 bits (202), Expect = 3.770e-19
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 RWISEGGALDLVLLPGPTAGHVFRQYAEVTGKPDLPPLFSMGFHQCRWNYRDE 159
            +W++EGG +DL LLPGP    V RQYAE+TG   +P +F++G+HQCRWNY+DE
Sbjct:   15 QWVAEGGVVDLFLLPGPAPADVTRQYAELTGTTAMPQMFAIGYHQCRWNYKDE 67
[Close]
BLAST of mRNA_H-elongata_contig180647.4813.1 vs. uniprot
Match: A0A669PRU9_PHACC (Gal_mutarotas_2 domain-containing protein n=3 Tax=Phasianinae TaxID=9072 RepID=A0A669PRU9_PHACC)

HSP 1 Score: 87.4 bits (215), Expect = 8.440e-19
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:    1 RWISEGGALDLVLLPGPTAGHVFRQYAEVTGKPDLPPLFSMGFHQCRWNYRDEQ 162
            RW+SE G +D+ LL GPTA  +FRQ+A++TG   LPPLFS+G+HQCRWNY DEQ
Sbjct:  238 RWMSESGIIDVFLLMGPTAFDIFRQFAQLTGTQALPPLFSLGYHQCRWNYEDEQ 291
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180647.4813.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLR8_9PHAE5.120e-2888.89Gal_mutarotas_2 domain-containing protein (Fragmen... [more]
UPI0018F565801.300e-1966.67neutral alpha-glucosidase C n=1 Tax=Tachyglossus a... [more]
A0A7S3PSF0_9STRA1.390e-1961.11Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A6I8NIX2_ORNAN3.310e-1964.81Gal_mutarotas_2 domain-containing protein n=1 Tax=... [more]
F7FUK3_ORNAN3.310e-1964.81Uncharacterized protein n=1 Tax=Ornithorhynchus an... [more]
F7FUK7_ORNAN3.310e-1964.81Gal_mutarotas_2 domain-containing protein n=3 Tax=... [more]
A0A7L1NIN2_RHICY3.310e-1966.67GANC glucosidase (Fragment) n=1 Tax=Rhinopomastus ... [more]
UPI0010A853E73.310e-1964.81neutral alpha-glucosidase C isoform X1 n=5 Tax=Orn... [more]
A0A0D2M7S4_9CHLO3.770e-1958.49Glucosidase, alpha n=1 Tax=Monoraphidium neglectum... [more]
A0A669PRU9_PHACC8.440e-1964.81Gal_mutarotas_2 domain-containing protein n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180647contigH-elongata_contig180647:378..539 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score90.5
Seed ortholog evalue2.6e-16
Seed eggNOG ortholog9258.ENSOANP00000007548
Preferred nameGANC
KEGG rclassRC00028,RC00049,RC00077
KEGG koko:K12317
KEGG ReactionR00028,R00801,R00802
KEGG Pathwayko00052,ko00500,ko01100,map00052,map00500,map01100
GOsGO:0003674,GO:0003824,GO:0004553,GO:0004558,GO:0005975,GO:0005996,GO:0006006,GO:0008150,GO:0008152,GO:0015926,GO:0016787,GO:0016798,GO:0019318,GO:0044238,GO:0044281,GO:0071704,GO:0090599
EggNOG free text desc.maltose alpha-glucosidase activity
EggNOG OGs3AJSB@33154,3BDJ3@33208,3CRKP@33213,3J99I@40674,4800W@7711,490EW@7742,COG1501@1,KOG1066@2759
EC3.2.1.20
COG Functional cat.GMO
CAZyGH31
Best tax levelMammalia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.8291187-CDS-H-elongata_contig180647:377..5391622930041.8291187-CDS-H-elongata_contig180647:377..539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180647 378..539 -
1691679258.20299-CDS-H-elongata_contig180647:377..5391691679258.20299-CDS-H-elongata_contig180647:377..539Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180647 378..539 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180647.4813.1prot_H-elongata_contig180647.4813.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180647 378..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180647.4813.1

>prot_H-elongata_contig180647.4813.1 ID=prot_H-elongata_contig180647.4813.1|Name=mRNA_H-elongata_contig180647.4813.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
RWISEGGALDLVLLPGPTAGHVFRQYAEVTGKPDLPPLFSMGFHQCRWNY
RDEQ
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mRNA from alignment at H-elongata_contig180647:378..539-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180647.4813.1 ID=mRNA_H-elongata_contig180647.4813.1|Name=mRNA_H-elongata_contig180647.4813.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig180647:378..539- (Himanthalia elongata Himel1 dioecious)
AGATGGATCAGCGAAGGTGGCGCGCTAGACCTCGTCCTCCTGCCGGGCCC
CACGGCAGGCCATGTGTTTCGTCAGTATGCCGAGGTCACCGGCAAGCCAG
ACCTGCCTCCCCTGTTCAGCATGGGCTTCCATCAGTGCCGCTGGAACTAC
CGAGATGAACAG
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Coding sequence (CDS) from alignment at H-elongata_contig180647:378..539-

>mRNA_H-elongata_contig180647.4813.1 ID=mRNA_H-elongata_contig180647.4813.1|Name=mRNA_H-elongata_contig180647.4813.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig180647:378..539- (Himanthalia elongata Himel1 dioecious)
AGATGGATCAGCGAAGGTGGCGCGCTAGACCTCGTCCTCCTGCCGGGCCC
CACGGCAGGCCATGTGTTTCGTCAGTATGCCGAGGTCACCGGCAAGCCAG
ACCTGCCTCCCCTGTTCAGCATGGGCTTCCATCAGTGCCGCTGGAACTAC
CGAGATGAACAGAGATGGATCAGCGAAGGTGGCGCGCTAGACCTCGTCCT
CCTGCCGGGCCCCACGGCAGGCCATGTGTTTCGTCAGTATGCCGAGGTCA
CCGGCAAGCCAGACCTGCCTCCCCTGTTCAGCATGGGCTTCCATCAGTGC
CGCTGGAACTACCGAGATGAACAG
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