mRNA_H-elongata_contig18064.4812.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18064.4812.1
Unique NamemRNA_H-elongata_contig18064.4812.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig18064.4812.1 vs. uniprot
Match: D7FXT7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXT7_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 2.990e-36
Identity = 79/189 (41.80%), Postives = 117/189 (61.90%), Query Frame = 1 
Query:    1 FGMKSPCKKPSTGITRDSLLQCMPATSESCAELMPSRDPTVRRTAIVFRDPRDIIISERRMKIEVYH----MRKTGELIPFIYQRFEEIVSWQLVRWIWHT-TFYKDVSHVMFYEDLQASPTALISLAASMGLDCSEEQALDVLARHKNQSPHGNFNSYDLPSGTIEYMNATMSKILPREILGRYGLSP 552
            FG   PC       TR+ L  C+  TS  C + MPS DP VRR+ ++ RDPRD+ +SER M+++ Y     +RK    + F  +RFE +VSW   R++WHT T     SHV+FYEDL+      I +A  MGL CSEE AL+V   H+N +PHG+++++ L   T+++MN TM+++LP  +  R+G++P
Sbjct:  194 FGDTPPCLDEEDTPTRERLRACLFNTSALCVQYMPSVDPDVRRSMVIIRDPRDVAMSEREMRMKYYRDPAWIRKATPDV-FARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLTCSEEDALEVWRAHRNPAPHGDYSTHGLKQETVQWMNETMARLLPPSLALRWGVTP 381
[Close]
BLAST of mRNA_H-elongata_contig18064.4812.1 vs. uniprot
Match: A0A6H5JLX3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JLX3_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 4.030e-36
Identity = 82/202 (40.59%), Postives = 115/202 (56.93%), Query Frame = 1 
Query:   43 TRDSLLQCMPATSESCAELMPSRDPTVRRTAIVFRDPRDIIISERRMKIEVYHMRKTGELI--PFIYQRFEEIVSWQLVRWIWHT-TFYKDVSHVMFYEDLQ-----------------------------ASPTALISLAASMGLDCSEEQALDVLARHKNQSPHGNFNSYDLPSGTIEYMNATMSKILPREILGRYGLSP 552
            TR+ L  C+  TS  C   +PS     RRTA++ RDPRD+++SE RM+ + YH  +   +    FI+ RF+ IVSW   RW+WHT T   + SHVMFY+DLQ                             A+P  +I LAA MGL+CSE+QA +V   H+N  PHG++ ++ L  GTIE+MNATM+ +LP  +   +GL+P
Sbjct:   98 TREQLTGCLWNTSSRCMGFVPSES---RRTAVMLRDPRDVVLSEFRMRRDYYHQEEVMAISVDDFIWDRFQTIVSWTHQRWVWHTETVLSESSHVMFYDDLQIFSACCCISNLSAPVRGARRLFYTQSSLKANPMGMIDLAAFMGLECSEDQARNVWESHQNAIPHGDYTTHGLQLGTIEWMNATMASLLPTAVSLHWGLTP 296
[Close]
BLAST of mRNA_H-elongata_contig18064.4812.1 vs. uniprot
Match: A0A6H5L6E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6E2_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.410e-35
Identity = 81/189 (42.86%), Postives = 117/189 (61.90%), Query Frame = 1 
Query:    1 FGMKSPCKKPSTGITRDSLLQCMPATSESCAELMPSRDPTVRRTAIVFRDPRDIIISERRMKIEVYH----MRKTGELIPFIYQRFEEIVSWQLVRWIWHT-TFYKDVSHVMFYEDLQASPTALISLAASMGLDCSEEQALDVLARHKNQSPHGNFNSYDLPSGTIEYMNATMSKILPREILGRYGLSP 552
            FG   PC       TR+ L  C+  TS  C + M S DP VRR+ ++ RDPRD+ +SER M+I+ Y     +RKT   + F  +RFE +VSW   R++WHT T     SHV+FYEDL+      I +A  MGL CSEE AL+V   H+N +PHG+++++ L   TI++MN TM+++LP  +  R+G++P
Sbjct:  260 FGDTPPCLDEEETPTRERLRACLFNTSALCVQYMASVDPDVRRSMVIIRDPRDVAMSEREMRIKYYREPAWIRKTTPDV-FARKRFEILVSWTHQRYLWHTETVMAPSSHVVFYEDLKDHHHGFIGMADFMGLACSEEDALEVWRAHRNPAPHGDYSTHGLQLETIQWMNETMARLLPPSLAFRWGVTP 447
[Close]
BLAST of mRNA_H-elongata_contig18064.4812.1 vs. uniprot
Match: A0A6H5L183_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L183_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 3.110e-33
Identity = 74/174 (42.53%), Postives = 110/174 (63.22%), Query Frame = 1 
Query:   43 TRDSLLQCMPATSESCAELMPSRDPTVRRTAIVFRDPRDIIISERRMKIEVYHMRK---TGELIPFIYQRFEEIVSWQLVRWIWHT-TFYKDVSHVMFYEDLQASPTALISLAASMGLDCSEEQALDVLARHKNQSPHGNFNSYDLPSGTIEYMNATMSKILPREILGRYGLSP 552
            TR+ L  C+  T++ C   M S DP VRR+ ++FRDPRD++ISE +M+ +V+H      +  L  F+  +FE +VSW   R++WHT       SHV FY++LQ SP   + +A  MGL+CSE+QA  V   HK  SP+G F +  L   TI++MNATM+++LP  +  ++GL+P
Sbjct:  225 TRERLESCLWNTTKRCVNYMTSTDPAVRRSIVLFRDPRDVVISEYKMRTQVFHRDPWIASLSLEEFVQFKFEVLVSWLHQRYMWHTGDLMGPSSHVEFYDELQKSPVGFVGIARLMGLECSEDQAYKVWKAHKQASPNGGF-ATRLGEATIQFMNATMARLLPPSVAIQWGLTP 397
[Close]
BLAST of mRNA_H-elongata_contig18064.4812.1 vs. uniprot
Match: A0A6H5JZR3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZR3_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.300e-32
Identity = 74/174 (42.53%), Postives = 105/174 (60.34%), Query Frame = 1 
Query:   43 TRDSLLQCMPATSESCAELMPSRDPTVRRTAIVFRDPRDIIISERRMKIEVYHMRK---TGELIPFIYQRFEEIVSWQLVRWIWHT-TFYKDVSHVMFYEDLQASPTALISLAASMGLDCSEEQALDVLARHKNQSPHGNFNSYDLPSGTIEYMNATMSKILPREILGRYGLSP 552
            TRD L+ C+  TS SC   MPS DP VRR+ ++ RDPR+++ISE  M+ +V    +   T  L  FI  +FE +VSW   R++WHT T     SH+  YE+LQ S   LI +A  MGL CSE+QA  V    ++ SP G + S  L   T+ +MNATM+++LP  +  R+ ++P
Sbjct:  122 TRDRLVSCLYDTSASCVRHMPSADPAVRRSIVIMRDPRNVVISEYMMRTQVIERERWTRTFSLDEFIMWKFEVLVSWIHQRYMWHTGTLMGPSSHITVYEELQRSHLGLIDIAGFMGLQCSEQQAAKVWIGRRHPSPSGGYASRGLSVETVSFMNATMARLLPPALALRWDVTP 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18064.4812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FXT7_ECTSI2.990e-3641.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLX3_9PHAE4.030e-3640.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L6E2_9PHAE1.410e-3542.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L183_9PHAE3.110e-3342.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JZR3_9PHAE2.300e-3242.53Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18064contigH-elongata_contig18064:3556..6220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1713
Cds size558
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18064.4812.1prot_H-elongata_contig18064.4812.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18064 3562..5071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.7156115-UTR-H-elongata_contig18064:3555..35611622930041.7156115-UTR-H-elongata_contig18064:3555..3561Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18064 3556..3561 +
1691679258.134499-UTR-H-elongata_contig18064:3555..35611691679258.134499-UTR-H-elongata_contig18064:3555..3561Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18064 3556..3561 +
1622930041.777686-UTR-H-elongata_contig18064:5071..62201622930041.777686-UTR-H-elongata_contig18064:5071..6220Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18064 5072..6220 +
1691679258.192742-UTR-H-elongata_contig18064:5071..62201691679258.192742-UTR-H-elongata_contig18064:5071..6220Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18064 5072..6220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.7289228-CDS-H-elongata_contig18064:3561..36831622930041.7289228-CDS-H-elongata_contig18064:3561..3683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18064 3562..3683 +
1691679258.1426916-CDS-H-elongata_contig18064:3561..36831691679258.1426916-CDS-H-elongata_contig18064:3561..3683Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18064 3562..3683 +
1622930041.739717-CDS-H-elongata_contig18064:3975..40961622930041.739717-CDS-H-elongata_contig18064:3975..4096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18064 3976..4096 +
1691679258.1512325-CDS-H-elongata_contig18064:3975..40961691679258.1512325-CDS-H-elongata_contig18064:3975..4096Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18064 3976..4096 +
1622930041.752274-CDS-H-elongata_contig18064:4329..44191622930041.752274-CDS-H-elongata_contig18064:4329..4419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18064 4330..4419 +
1691679258.1600459-CDS-H-elongata_contig18064:4329..44191691679258.1600459-CDS-H-elongata_contig18064:4329..4419Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18064 4330..4419 +
1622930041.7648969-CDS-H-elongata_contig18064:4846..50711622930041.7648969-CDS-H-elongata_contig18064:4846..5071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18064 4847..5071 +
1691679258.1814685-CDS-H-elongata_contig18064:4846..50711691679258.1814685-CDS-H-elongata_contig18064:4846..5071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18064 4847..5071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18064.4812.1

>prot_H-elongata_contig18064.4812.1 ID=prot_H-elongata_contig18064.4812.1|Name=mRNA_H-elongata_contig18064.4812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=186bp
MKSPCKKPSTGITRDSLLQCMPATSESCAELMPSRDPTVRRTAIVFRDPR
DIIISERRMKIEVYHMRKTGELIPFIYQRFEEIVSWQLVRWIWHTTFYKD
VSHVMFYEDLQASPTALISLAASMGLDCSEEQALDVLARHKNQSPHGNFN
SYDLPSGTIEYMNATMSKILPREILGRYGLSPISS*
back to top

mRNA from alignment at H-elongata_contig18064:3556..6220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18064.4812.1 ID=mRNA_H-elongata_contig18064.4812.1|Name=mRNA_H-elongata_contig18064.4812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2665bp|location=Sequence derived from alignment at H-elongata_contig18064:3556..6220+ (Himanthalia elongata Himel1 dioecious)
TTCGGAATGAAATCTCCATGTAAAAAGCCAAGCACCGGCATCACGCGAGA
CTCTCTCCTGCAGTGCATGCCAGCCACTTCGGAAAGCTGTGCGGAGCTAA
TGCCTTCTCGAGATCCAACCGTTCGACGGTGAGAAATCCCCATATAGCCA
CTGTCACCAATTCATTGCCCACACACGGAACGTATTCTGCTTCCCTTTTA
CTGCCAGAGTCTCAGTCGTAAAACGAACACACCACGTTTTTTTTAAATAT
ATTATGAAGGTGGTTGATGAGTGCTTGGTATACCGGCAGTATGCGATCAG
CTCCATCACTTACTTCACGTGGTGAGAGTCGTTCGTTCAAGTTTATCGAG
CATTGTTCACTCTATTCGCAACTTCTCCCCATTTTTGTCTGCCACACGAC
GTATTTTGACGCTTTCCCAGGACCGCCATAGTGTTCAGGGACCCAAGGGA
CATTATCATTTCTGAACGGAGAATGAAGATCGAGGTGTATCACATGAGAA
AAACTGGCGAGCTTATCCCATTCATCTATCAACGATTCGAGGTGCAAGTC
GGTGAAAATACGTTTGGAAAGTCAGTTGTACAATTGACTTGTCTTTGCTT
GAATACTTAAGTATGACTGCAGTATATGATGTCGTGTAACCCCCGTAGCG
TTACAAATATGCCTCCAGACCTGATATCATACAAAACTTCTTTGCTGAAA
TGCATTATCACCACTCTTCCGGCATAATATTACTACGTCATCTGTTACGC
CGCCGCAATGTTTCACGCGCCCAGGAAATCGTGAGTTGGCAACTCGTACG
ATGGATATGGCACACCACATTCTACAAAGACGTATCGCACGTTATGTTTT
ATGAAGATCTCCAGGCAAGCGAATGAGTGGCGTTACGATTTGGGAATATG
TTCCTTCACCACTTCCTTGCCTCCATCTCGTTTTATGCCATCCGTTAGCT
CTACGTTGATATACCAGTCGGAGGTTTTTGCGGCCAAAATTCACGCGCAA
AATACGGCCGGCTGAAAATCAGTTTTAGCGACATGTACACGAATAAGGCA
GCAACATATTATCTGTGTCTATTTCTAGATGTCTTAGCTTCTCTTCCCCA
GCAACGGCTCTGCTAACATTTTGATAAGATGCCTCGATCCATCAAAACCC
GGAAGGATCATTTCATCGATTTTAAAAACGACGATTTGGGTGCAAAGCTT
GTTTTCAATAACTCTAACGTTCACGCTTAACTTGCCCAAGAAGATTTGTC
CATCTAAATATGTATTTATTACCTTCCGTGTTTTTCCGCAGGCAAGCCCA
ACGGCTTTGATAAGTTTGGCTGCTTCCATGGGGCTTGACTGCTCTGAGGA
ACAAGCGCTCGATGTATTGGCAAGGCATAAGAATCAGTCTCCACATGGTA
ACTTCAACTCGTACGATTTACCGTCAGGAACAATTGAATATATGAACGCG
ACCATGTCGAAGATCCTGCCCAGAGAGATACTTGGCCGCTACGGGCTTTC
CCCGATTTCTAGCTAGCTTGTGGGTGCTGCTATGGCACAGAAAGTGACGT
GGCCGTGGGATTCAAAGGGTCTTGTCGTAATCATATAATAGCAAATATCA
TAGATGAAGGGGCTGTCATGTAGTGATCCAAACGATGGGATAAAGCCATC
GGGCTGCGCTCGATATTTTGTATCCATGACGTCCAATAATTTTATAGTCT
CGTCTATTTGGCTCGGTCAAAGAATTGGGGGCGATACTGAAAACAAAAAG
GAAATCGCGAACCCACCGTTTAGCCCCCAAATACCAATGTGAGGGCGAAG
TGGTGCCGAGGTACAGGAGTCTACGTATTTCACCCGGTGCTTGCGGCCAT
CTGCCAAGAGAAAGATAATAATGCCTATATGCTGCGTGTGATTTATTGTT
GGCCCCTTGAGCCAATCAATGTCGTTTGGAGGAGAGATATATAGACAGAG
AGAGAGTGCCTAGATATTATATACGAAATCGATAAGAATGAGCCCAAACG
AGCTCACCAAAAGCGCCGAAGCCACCAGGAGACAAACCCCCCCCCAAAAC
AATTTAATGTGTATATTTCTTACATATAGGTCATGATTGATTGTTTCAAT
AACCTGAGACAGTATCTTCCCCCATAAGCGAAGACGTTGCTATCTTGAAC
TCAAAGCACTCTCTCTCTGATGGGATACATGAGCTGAAAACTTAGAACTA
CGTTTCAGATATCCGCGCTCCTGCCTAGCAATAGCAATGGCAATGGCAAC
GGTATTGACAGTGGCAATGGTAATAGTAATGGCAATGGCAATAGCAATAG
CAATGACAATGACCATGACAATAGCAATGTCAATTGTAATGCCAATGTAT
TGACAATGGTAATGACAATGGCAATGGTAATGACAATAGCATTGGCAATA
GCAATGGCAATGACAATGACAATAGCAATGGTAATGGTAGTGGTAATGGT
AATGCTATGTCAATGGCATTTGTAATGGTAATGTCATTGGTAATGGCAAT
AATAGCAATGTCAATGTCAATAGCAATGACAATGTCAATGGTAATCGTAA
TATTAGTTGTATTGTCAACGGTAATGGTAATGTCAATAGCAATAGCATTG
GCAATAGCAATAGAAATGTCAGTAGCAATATCACTAGCAATGGCAATGGC
AATGTTTATGGTAAT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig18064:3556..6220+

>mRNA_H-elongata_contig18064.4812.1 ID=mRNA_H-elongata_contig18064.4812.1|Name=mRNA_H-elongata_contig18064.4812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1116bp|location=Sequence derived from alignment at H-elongata_contig18064:3556..6220+ (Himanthalia elongata Himel1 dioecious)
ATGAAATCTCCATGTAAAAAGCCAAGCACCGGCATCACGCGAGACTCTCT
CCTGCAGTGCATGCCAGCCACTTCGGAAAGCTGTGCGGAGCTAATGCCTT
CTCGAGATCCAACCGTTCGACGATGAAATCTCCATGTAAAAAGCCAAGCA
CCGGCATCACGCGAGACTCTCTCCTGCAGTGCATGCCAGCCACTTCGGAA
AGCTGTGCGGAGCTAATGCCTTCTCGAGATCCAACCGTTCGACGGACCGC
CATAGTGTTCAGGGACCCAAGGGACATTATCATTTCTGAACGGAGAATGA
AGATCGAGGTGTATCACATGAGAAAAACTGGCGAGCTTATCCCATTCATC
TATCAACGATTCGAGGACCGCCATAGTGTTCAGGGACCCAAGGGACATTA
TCATTTCTGAACGGAGAATGAAGATCGAGGTGTATCACATGAGAAAAACT
GGCGAGCTTATCCCATTCATCTATCAACGATTCGAGGAAATCGTGAGTTG
GCAACTCGTACGATGGATATGGCACACCACATTCTACAAAGACGTATCGC
ACGTTATGTTTTATGAAGATCTCCAGGAAATCGTGAGTTGGCAACTCGTA
CGATGGATATGGCACACCACATTCTACAAAGACGTATCGCACGTTATGTT
TTATGAAGATCTCCAGGCAAGCCCAACGGCTTTGATAAGTTTGGCTGCTT
CCATGGGGCTTGACTGCTCTGAGGAACAAGCGCTCGATGTATTGGCAAGG
CATAAGAATCAGTCTCCACATGGTAACTTCAACTCGTACGATTTACCGTC
AGGAACAATTGAATATATGAACGCGACCATGTCGAAGATCCTGCCCAGAG
AGATACTTGGCCGCTACGGGCTTTCCCCGATTTCTAGCTAGGCAAGCCCA
ACGGCTTTGATAAGTTTGGCTGCTTCCATGGGGCTTGACTGCTCTGAGGA
ACAAGCGCTCGATGTATTGGCAAGGCATAAGAATCAGTCTCCACATGGTA
ACTTCAACTCGTACGATTTACCGTCAGGAACAATTGAATATATGAACGCG
ACCATGTCGAAGATCCTGCCCAGAGAGATACTTGGCCGCTACGGGCTTTC
CCCGATTTCTAGCTAG
back to top