mRNA_H-elongata_contig18062.4809.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18062.4809.1
Unique NamemRNA_H-elongata_contig18062.4809.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18062.4809.1 vs. uniprot
Match: A0A6H5K232_9PHAE (eIF2B_5 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K232_9PHAE)

HSP 1 Score: 246 bits (629), Expect = 9.070e-81
Identity = 118/121 (97.52%), Postives = 120/121 (99.17%), Query Frame = 1 
Query:   13 QTLWANFQDICQLMKRQPEHVFQFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRAIRNAVK 375
            +TLWANFQDICQLMKRQPEHVF FVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRA+RNAVK
Sbjct:  138 KTLWANFQDICQLMKRQPEHVFSFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRALRNAVK 258
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BLAST of mRNA_H-elongata_contig18062.4809.1 vs. uniprot
Match: A0A836CND3_9STRA (Eukaryotic initiation factor 2 beta subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND3_9STRA)

HSP 1 Score: 238 bits (606), Expect = 1.150e-77
Identity = 112/121 (92.56%), Postives = 118/121 (97.52%), Query Frame = 1 
Query:   13 QTLWANFQDICQLMKRQPEHVFQFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRAIRNAVK 375
            +T+WANFQ+IC+LMKR PEHVF FVVAELGTEGS+DGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRL FVHCQDCGSSRSVAP+RSGFHAQTRADRRAIRNAVK
Sbjct:  110 KTVWANFQEICKLMKRSPEHVFSFVVAELGTEGSVDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLHFVHCQDCGSSRSVAPVRSGFHAQTRADRRAIRNAVK 230
[Close]
BLAST of mRNA_H-elongata_contig18062.4809.1 vs. uniprot
Match: A0A7S2D5T9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D5T9_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.470e-71
Identity = 104/117 (88.89%), Postives = 111/117 (94.87%), Query Frame = 1 
Query:   13 QTLWANFQDICQLMKRQPEHVFQFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRAIR 363
            +TLWANFQDIC+ M+R PEHVF F +AELGTEGSIDGNQRLV+RGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRD VSRLFF+HCQDCGSSRSVAPIR GFHAQTRADRRA+R
Sbjct:  104 KTLWANFQDICKSMRRNPEHVFSFFMAELGTEGSIDGNQRLVIRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDSVSRLFFMHCQDCGSSRSVAPIRQGFHAQTRADRRAMR 220
[Close]
BLAST of mRNA_H-elongata_contig18062.4809.1 vs. uniprot
Match: A0A7S2SBF4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBF4_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.560e-70
Identity = 102/117 (87.18%), Postives = 113/117 (96.58%), Query Frame = 1 
Query:   13 QTLWANFQDICQLMKRQPEHVFQFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRAIR 363
            +TLWANFQDIC+ M+R PEHVFQF +AELGTEGSIDGNQRLV+RGKYVPKYIESLLRKYIVEYVTCQMCRSPNT+LTRD VSRL+F++CQDCGSSRSVAPIR+GFHAQTRADRRA+R
Sbjct:  112 KTLWANFQDICKSMRRNPEHVFQFFMAELGTEGSIDGNQRLVIRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTSLTRDSVSRLYFINCQDCGSSRSVAPIRAGFHAQTRADRRAMR 228
[Close]
BLAST of mRNA_H-elongata_contig18062.4809.1 vs. uniprot
Match: F0XZH3_AURAN (eIF2B_5 domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZH3_AURAN)

HSP 1 Score: 212 bits (539), Expect = 1.500e-68
Identity = 98/114 (85.96%), Postives = 108/114 (94.74%), Query Frame = 1 
Query:   13 QTLWANFQDICQLMKRQPEHVFQFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRR 354
            +TLW NFQ+IC++M R PEHVFQF +AELGTEGSIDG QRLV+RGKYVPKYIESLLRKYIVEYVTCQMCRSP+T+LTRD VSRLFF+HCQDCGSSRSVAPIR+GFHAQTRADRR
Sbjct:   41 KTLWVNFQEICKMMHRSPEHVFQFFMAELGTEGSIDGTQRLVIRGKYVPKYIESLLRKYIVEYVTCQMCRSPSTSLTRDSVSRLFFLHCQDCGSSRSVAPIRAGFHAQTRADRR 154
[Close]
BLAST of mRNA_H-elongata_contig18062.4809.1 vs. uniprot
Match: M4B8Q4_HYAAE (eIF2B_5 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8Q4_HYAAE)

HSP 1 Score: 212 bits (539), Expect = 2.450e-68
Identity = 99/117 (84.62%), Postives = 107/117 (91.45%), Query Frame = 1 
Query:   13 QTLWANFQDICQLMKRQPEHVFQFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRAIR 363
            +TLW NFQ+ICQ+M R PEHV QF +AELGTEGSIDGNQRLV+RG+YVPKYIESLLRKYI EYV+CQMCRSPNTTLTRD VSRL+FVHCQDCGSSRSVA IRSGFHA TRADRRA R
Sbjct:   52 KTLWVNFQEICQMMHRSPEHVLQFTLAELGTEGSIDGNQRLVIRGRYVPKYIESLLRKYITEYVSCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVAAIRSGFHAATRADRRAAR 168
[Close]
BLAST of mRNA_H-elongata_contig18062.4809.1 vs. uniprot
Match: A0A5D6XJH0_9STRA (eIF2B_5 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJH0_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.280e-67
Identity = 99/117 (84.62%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:   13 QTLWANFQDICQLMKRQPEHVFQFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRAIR 363
            +TLW NFQ+ICQ+M R PEHV QF +AELGTEGSIDGNQRLV+RG+YVPKYIESLLRKYI+EYV+CQMCRSPNTTLTRD VSRL+FVHCQDCGSSRSVA IRSGFHA TRADRRA R
Sbjct:  114 KTLWVNFQEICQMMHRSPEHVLQFTLAELGTEGSIDGNQRLVIRGRYVPKYIESLLRKYIMEYVSCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVAAIRSGFHAATRADRRAAR 230
[Close]
BLAST of mRNA_H-elongata_contig18062.4809.1 vs. uniprot
Match: H3GGU4_PHYRM (eIF2B_5 domain-containing protein n=21 Tax=Peronosporaceae TaxID=4777 RepID=H3GGU4_PHYRM)

HSP 1 Score: 212 bits (539), Expect = 1.930e-67
Identity = 99/117 (84.62%), Postives = 107/117 (91.45%), Query Frame = 1 
Query:   13 QTLWANFQDICQLMKRQPEHVFQFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRAIR 363
            +TLW NFQ+ICQ+M R PEHV QF +AELGTEGSIDGNQRLV+RG+YVPKYIESLLRKYI EYV+CQMCRSPNTTLTRD VSRL+FVHCQDCGSSRSVA IRSGFHA TRADRRA R
Sbjct:  116 KTLWVNFQEICQMMHRSPEHVLQFTLAELGTEGSIDGNQRLVIRGRYVPKYIESLLRKYITEYVSCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVAAIRSGFHAATRADRRAAR 232
[Close]
BLAST of mRNA_H-elongata_contig18062.4809.1 vs. uniprot
Match: A0A7S2SBF3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SBF3_9STRA)

HSP 1 Score: 219 bits (559), Expect = 2.070e-67
Identity = 102/117 (87.18%), Postives = 113/117 (96.58%), Query Frame = 1 
Query:   13 QTLWANFQDICQLMKRQPEHVFQFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRAIR 363
            +TLWANFQDIC+ M+R PEHVFQF +AELGTEGSIDGNQRLV+RGKYVPKYIESLLRKYIVEYVTCQMCRSPNT+LTRD VSRL+F++CQDCGSSRSVAPIR+GFHAQTRADRRA+R
Sbjct:  368 KTLWANFQDICKSMRRNPEHVFQFFMAELGTEGSIDGNQRLVIRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTSLTRDSVSRLYFINCQDCGSSRSVAPIRAGFHAQTRADRRAMR 484
[Close]
BLAST of mRNA_H-elongata_contig18062.4809.1 vs. uniprot
Match: A0A2D4BXT7_PYTIN (Eukaryotic translation initiation factor 2 subunit beta n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BXT7_PYTIN)

HSP 1 Score: 212 bits (540), Expect = 2.550e-67
Identity = 99/117 (84.62%), Postives = 107/117 (91.45%), Query Frame = 1 
Query:   13 QTLWANFQDICQLMKRQPEHVFQFVVAELGTEGSIDGNQRLVLRGKYVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSRSVAPIRSGFHAQTRADRRAIR 363
            +TLW NFQ+ICQ+M R PEHV QF +AELGTEGSIDGNQRLV+RG+YVPKYIESLLRKYI EYVTCQMCRSPNTTLTRD VSRL+FVHCQDCGSSRSV+ IRSGFHA TRADRRA R
Sbjct:  136 KTLWVNFQEICQMMHRNPEHVLQFTLAELGTEGSIDGNQRLVIRGRYVPKYIESLLRKYITEYVTCQMCRSPNTTLTRDSVSRLYFVHCQDCGSSRSVSAIRSGFHAATRADRRAAR 252
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18062.4809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K232_9PHAE9.070e-8197.52eIF2B_5 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836CND3_9STRA1.150e-7792.56Eukaryotic initiation factor 2 beta subunit n=1 Ta... [more]
A0A7S2D5T9_9STRA1.470e-7188.89Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SBF4_9STRA1.560e-7087.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0XZH3_AURAN1.500e-6885.96eIF2B_5 domain-containing protein (Fragment) n=1 T... [more]
M4B8Q4_HYAAE2.450e-6884.62eIF2B_5 domain-containing protein n=1 Tax=Hyaloper... [more]
A0A5D6XJH0_9STRA1.280e-6784.62eIF2B_5 domain-containing protein n=1 Tax=Pythium ... [more]
H3GGU4_PHYRM1.930e-6784.62eIF2B_5 domain-containing protein n=21 Tax=Peronos... [more]
A0A7S2SBF3_9STRA2.070e-6787.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2D4BXT7_PYTIN2.550e-6784.62Eukaryotic translation initiation factor 2 subunit... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18062contigH-elongata_contig18062:4265..5252 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score248.1
Seed ortholog evalue2.3e-63
Seed eggNOG ortholog2880.D7G233
Preferred nameSUI3
KEGG koko:K03238
KEGG Pathwayko03013,map03013
GOsGO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005850,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016282,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0031369,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0065003,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG1601@1,KOG2768@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioneukaryotic initiation factor 2 beta subunit
Ec32 orthologEc-11_003650.1
Exons3
Model size378
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18062.4809.1prot_H-elongata_contig18062.4809.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18062 4265..5252 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.513431-CDS-H-elongata_contig18062:4264..44091622930041.513431-CDS-H-elongata_contig18062:4264..4409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18062 4265..4409 +
1691679258.086638-CDS-H-elongata_contig18062:4264..44091691679258.086638-CDS-H-elongata_contig18062:4264..4409Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18062 4265..4409 +
1622930041.5309618-CDS-H-elongata_contig18062:4626..47631622930041.5309618-CDS-H-elongata_contig18062:4626..4763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18062 4627..4763 +
1691679258.0965157-CDS-H-elongata_contig18062:4626..47631691679258.0965157-CDS-H-elongata_contig18062:4626..4763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18062 4627..4763 +
1622930041.5478349-CDS-H-elongata_contig18062:5156..52521622930041.5478349-CDS-H-elongata_contig18062:5156..5252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18062 5157..5252 +
1691679258.104126-CDS-H-elongata_contig18062:5156..52521691679258.104126-CDS-H-elongata_contig18062:5156..5252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18062 5157..5252 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18062.4809.1

>prot_H-elongata_contig18062.4809.1 ID=prot_H-elongata_contig18062.4809.1|Name=mRNA_H-elongata_contig18062.4809.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
MCVPQTLWANFQDICQLMKRQPEHVFQFVVAELGTEGSIDGNQRLVLRGK
YVPKYIESLLRKYIVEYVTCQMCRSPNTTLTRDPVSRLFFVHCQDCGSSR
SVAPIRSGFHAQTRADRRAIRNAVK*
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mRNA from alignment at H-elongata_contig18062:4265..5252+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18062.4809.1 ID=mRNA_H-elongata_contig18062.4809.1|Name=mRNA_H-elongata_contig18062.4809.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=988bp|location=Sequence derived from alignment at H-elongata_contig18062:4265..5252+ (Himanthalia elongata Himel1 dioecious)
ATGTGTGTCCCGCAGACCTTGTGGGCAAACTTTCAGGATATTTGCCAGCT
GATGAAGAGGCAACCAGAACACGTCTTCCAGTTTGTTGTCGCGGAGCTCG
GAACGGAAGGTTCCATCGACGGAAACCAACGCTTGGTGCTGCGAGGTGAG
TCCCCTGACCGAATCACGACCTCCCACCACTACTCTTATCGGAGGTGTCT
AGTGTCTAGTGTCCACTTTGCATCACAAACCACCCCTTGGCATCGTTCTC
GTCCTAATGCAATGCGATGAGGTCAATCGTGCGGATGTTCAGCTCAAGTC
ACTTTTCCCTCCTCTTCTAAAGATAGACGTCCGTCCTTTTCCTCATTTTC
CCTCTTGAACAGGAAAGTACGTGCCCAAGTACATCGAGTCGCTTCTACGG
AAGTACATCGTAGAGTACGTCACGTGCCAGATGTGTCGCAGCCCAAACAC
GACACTCACCAGGGACCCTGTATCGCGACTCTTTTTTGTTCACTGTCAGG
TAAGCGTGTCAGCTTTACCGTGAGTTAATTACCTCGCTGTATTGTGTTTT
CCAGTTGGCCGACTCTTTTTGGGGGTCTAATCGTCGTCTCCCCGGTTATA
GCGCTTGATATGAAATACATGATATTCGTATTAAAGGTAATTATATACGT
TTTATCCCAACAGGGGGCGTGCTTACTCTGTCCCCTACTCTAAATTGGGG
ACGGTTAAACAATCATCCCTATATCGTCAGATTAGTCCTTTGTTCAAGAG
CGACAGTTATAACCCCCCCCCTCCACCCTAAAAAAATGTAAGTGATGTTC
CCGAAACTTTCATCATGTTTTTTTTTAAGTTACAAATTCGTACGGCCTCC
TGCATCGACGATCGAATGACCTTGAAATCTGTCTGTACGCAGGACTGTGG
ATCGAGTCGCTCCGTTGCACCAATTCGATCTGGATTCCACGCGCAAACAC
GGGCAGACAGGCGTGCAATTCGGAATGCTGTCAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig18062:4265..5252+

>mRNA_H-elongata_contig18062.4809.1 ID=mRNA_H-elongata_contig18062.4809.1|Name=mRNA_H-elongata_contig18062.4809.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig18062:4265..5252+ (Himanthalia elongata Himel1 dioecious)
ATGTGTGTCCCGCAGACCTTGTGGGCAAACTTTCAGGATATTTGCCAGCT
GATGAAGAGGCAACCAGAACACGTCTTCCAGTTTGTTGTCGCGGAGCTCG
GAACGGAAGGTTCCATCGACGGAAACCAACGCTTGGTGCTGCGAGATGTG
TGTCCCGCAGACCTTGTGGGCAAACTTTCAGGATATTTGCCAGCTGATGA
AGAGGCAACCAGAACACGTCTTCCAGTTTGTTGTCGCGGAGCTCGGAACG
GAAGGTTCCATCGACGGAAACCAACGCTTGGTGCTGCGAGGAAAGTACGT
GCCCAAGTACATCGAGTCGCTTCTACGGAAGTACATCGTAGAGTACGTCA
CGTGCCAGATGTGTCGCAGCCCAAACACGACACTCACCAGGGACCCTGTA
TCGCGACTCTTTTTTGTTCACTGTCAGGAAAGTACGTGCCCAAGTACATC
GAGTCGCTTCTACGGAAGTACATCGTAGAGTACGTCACGTGCCAGATGTG
TCGCAGCCCAAACACGACACTCACCAGGGACCCTGTATCGCGACTCTTTT
TTGTTCACTGTCAGGACTGTGGATCGAGTCGCTCCGTTGCACCAATTCGA
TCTGGATTCCACGCGCAAACACGGGCAGACAGGCGTGCAATTCGGAATGC
TGTCAAGTAGGACTGTGGATCGAGTCGCTCCGTTGCACCAATTCGATCTG
GATTCCACGCGCAAACACGGGCAGACAGGCGTGCAATTCGGAATGCTGTC
AAGTAG
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