prot_H-elongata_contig18057.4807.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig18057.4807.1
Unique Nameprot_H-elongata_contig18057.4807.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length613
Homology
BLAST of mRNA_H-elongata_contig18057.4807.1 vs. uniprot
Match: A0A6H5JQ71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ71_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.510e-9
Identity = 110/325 (33.85%), Postives = 134/325 (41.23%), Query Frame = 0
Query:  314 WASESSPA-----AAARVVSTAAAS------RAKALTPQSSLPSKSTLLPVPTASALAPVAPSPGSGRPVSGGNAWGVSA--KGVIQVAAASPPRGVAISPVLASNNAR-PVV-GSRYGSQRRRPGXXXXXXWXXXXXXXXXXXXXXXDRRTKHPLGVFVTPPRATVP-AGIGQASRPLGPSNRAGVIGP-PQPALKMMVESSVTSGGTTTNAGNGIGNDSHPSGG------------VPSEGGSDGVVSGTVPGG----RRIVPLGPAAGMGRQSARGPDK----AGDG-EALVENEKLVSFLMETGSILALAQMLEEEEDWRK 600
            WASESSPA     AA  V S+A AS       A    P+ S PS S +  VP           PG G P   G AWG +   K  +  A +S P G   S   A    R PV  G ++  QR+ PG                                         P AG+  A+R  GPSNRAGVIG  PQ A        V      ++ G    N   P+              V S+GG+     G  P G    R+  P+G  +     S+         A  G EAL+ENEKLVSFL+ETGSILALA+ LEEEEDWR+
Sbjct: 1058 WASESSPANVAVSAATPVRSSAVASPXPAAVSATGTAPRVSAPSPSLVQVVP-----------PGGGGP---GGAWGGAGVVKPAVPPAVSSGPVGTPSSTTAAKGVLRHPVANGLQFAPQRQGPGPASVWGASPSIMDARHNPLSVAPSAXXXXXXXXXXGSSLGAPFAGLPAAARAPGPSNRAGVIGSRPQAAAAXXXXXXVAKSVGPSSRGVPTANALSPASATVGNRVTTTVASVNSKGGTVSSSGGVSPAGVVIPRQEAPIGSGSSSSANSSSSVSSLFRSASTGSEALIENEKLVSFLLETGSILALARRLEEEEDWRR 1368          
BLAST of mRNA_H-elongata_contig18057.4807.1 vs. uniprot
Match: D8LKX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKX1_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 4.130e-8
Identity = 97/292 (33.22%), Postives = 127/292 (43.49%), Query Frame = 0
Query:  366 PGSGRPVSGGNAWGVSA--KGVIQVAAASPPRGVAISPVLASNNARPVV-GSRYGSQRRRPGXXXXXXWXXXXXXXXXXXXXXXDRRTKHPLGVFVTPPRATVP---------------AGIGQASRPLGPSNRAGVIGP-PQPALKMMVESSVTS----------------GGTTTNAGNGIGNDSHPSGGVPSEGGSDGVVSGTVPGGRRIVPLGPA-------AGMGRQSARGPD---------KAGDG-EALVENEKLVSFLMETGSILALAQMLEEEEDWRKSATSS 605
            PG G P   G AWG +   K  +  A +S P G   S        +PV  GS++  QR+ PG      W               D R  +PL V   PP ++                 AG+  A+R  GPSNRAGVIG  PQ     +  ++V +                  T+T  G+ +   +  +  V S+GG+   V+GTV     + P G A        G G  S+              A  G EAL+ENEKLVSFL+ETGSILALA+ LEEEEDWR+   SS
Sbjct: 1186 PGGGGP---GGAWGGAGVVKPAVPPAVSSRPVGTPSSTTAKGVLRQPVANGSQFAPQRQGPGPGSV--WGASSSIM--------DAR-HNPLSV--APPASSASSXXXXXAGSSLGAPFAGLPAAARAPGPSNRAGVIGSRPQATATTVAAAAVVAKPVGPSSRGLPTANALSPTSTTVGSRV---TTTAASVNSKGGTG--VAGTVSSSGGVSPAGVAIPWQEAPVGGGSGSSXXXXXXSVSSLFRSASTGSEALIENEKLVSFLLETGSILALARRLEEEEDWRRPVPSS 1456          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18057.4807.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ71_9PHAE1.510e-933.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKX1_ECTSI4.130e-833.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 14..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18057contigH-elongata_contig18057:1148..3671 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18057.4807.1mRNA_H-elongata_contig18057.4807.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig18057 1127..4273 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig18057.4807.1 ID=prot_H-elongata_contig18057.4807.1|Name=mRNA_H-elongata_contig18057.4807.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=613bp
MEGKERQGKQAQQAAKKSKKAKKKEKRKNAAKEAAVEPPSRDDVKAGQTT
SVGRGNGPKNETAGQAAGDRDTGDKSKVTRPKEGGVDESKRRRSPSRNRA
ASMESNSEGDYSPSSPQNPQDAYASTPAGALITATALAVTAAAAAAVKAA
STATGNNEPLLAEANGGGSSKALKAEERRRGRKKVEGVEQQQRAGSNAPK
SVVPGGSRSSVASAGRRAKGGDAPVDDDSEGQWVVVGSRGGPQPSGSSFS
SVVAAKSATKGAVTGGVGGMGAWGSAAGQRQPKWGKGQQQQRVGDAGPGS
QGPNNGGGGSVVGWASESSPAAAARVVSTAAASRAKALTPQSSLPSKSTL
LPVPTASALAPVAPSPGSGRPVSGGNAWGVSAKGVIQVAAASPPRGVAIS
PVLASNNARPVVGSRYGSQRRRPGPGPGSVWGASPPAPSPVPAPTPDRRT
KHPLGVFVTPPRATVPAGIGQASRPLGPSNRAGVIGPPQPALKMMVESSV
TSGGTTTNAGNGIGNDSHPSGGVPSEGGSDGVVSGTVPGGRRIVPLGPAA
GMGRQSARGPDKAGDGEALVENEKLVSFLMETGSILALAQMLEEEEDWRK
SATSSSTSSGRG*
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