mRNA_H-elongata_contig180530.4806.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180530.4806.1
Unique NamemRNA_H-elongata_contig180530.4806.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig180530.4806.1 vs. uniprot
Match: A0A6H5L2Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 5.640e-10
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:    1 RDGQDRIGSGGGANYARRSPFPMINILRTNQ 93
            RDG+DRIGSGG AN+ARRSPFPMINILRTNQ
Sbjct:  364 RDGRDRIGSGGAANFARRSPFPMINILRTNQ 394
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BLAST of mRNA_H-elongata_contig180530.4806.1 vs. uniprot
Match: D7G7N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N7_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 5.660e-10
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:    1 RDGQDRIGSGGGANYARRSPFPMINILRTNQ 93
            RDG+DRIGSGG AN+ARRSPFPMINILRTNQ
Sbjct:  302 RDGRDRIGSGGAANFARRSPFPMINILRTNQ 332
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BLAST of mRNA_H-elongata_contig180530.4806.1 vs. uniprot
Match: A0A7S2Y0U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0U9_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.540e-8
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:    1 RDGQDRIGSGGGANYARRSPFPMINILRTNQ 93
            RDG  R+G GG ANYARRSP PMINILRTNQ
Sbjct:  106 RDGMARLGDGGAANYARRSPLPMINILRTNQ 136
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BLAST of mRNA_H-elongata_contig180530.4806.1 vs. uniprot
Match: A0A7S3XYD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYD6_HETAK)

HSP 1 Score: 55.5 bits (132), Expect = 6.160e-8
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 RDGQDRIGSGGGANYARRSPFPMINILRTNQ 93
            RDGQDR+G  G ANYARRSP PMINILRT+Q
Sbjct:  325 RDGQDRLGDAGAANYARRSPLPMINILRTDQ 355
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BLAST of mRNA_H-elongata_contig180530.4806.1 vs. uniprot
Match: A0A7S0Z2B5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z2B5_9CRYP)

HSP 1 Score: 53.1 bits (126), Expect = 1.440e-7
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:    1 RDGQDRIGSGGGANYARRSPFPMINILRTNQ 93
            RDG DR+G G  AN+ARRSPFPMINILRT Q
Sbjct:   65 RDGADRMGGGSAANFARRSPFPMINILRTKQ 95
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BLAST of mRNA_H-elongata_contig180530.4806.1 vs. uniprot
Match: A0A7S4JMW6_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JMW6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 4.010e-7
Identity = 24/31 (77.42%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 RDGQDRIGSGGGANYARRSPFPMINILRTNQ 93
            RDG +R GS G ANYARRSP+PM+NILRTNQ
Sbjct:  509 RDGGERSGSAGAANYARRSPWPMVNILRTNQ 539
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BLAST of mRNA_H-elongata_contig180530.4806.1 vs. uniprot
Match: L1JRB3_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JRB3_GUITC)

HSP 1 Score: 52.4 bits (124), Expect = 7.510e-7
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:    1 RDGQDRIGSGGGANYARRSPFPMINILRTNQ 93
            RDG DR+G  G AN+ARRS FPMINILRTNQ
Sbjct:  233 RDGADRMGESGAANFARRSSFPMINILRTNQ 263
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BLAST of mRNA_H-elongata_contig180530.4806.1 vs. uniprot
Match: A0A7S1BDN7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDN7_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.530e-7
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 RDGQDRIGSGGGANYARRSPFPMINILRTNQ 93
            RDG+DR+G    AN+ARRSP+PMINILRTNQ
Sbjct:  329 RDGEDRMGDAAAANFARRSPWPMINILRTNQ 359
[Close]
BLAST of mRNA_H-elongata_contig180530.4806.1 vs. uniprot
Match: A0A7S0NF62_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NF62_9CRYP)

HSP 1 Score: 52.4 bits (124), Expect = 7.560e-7
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:    1 RDGQDRIGSGGGANYARRSPFPMINILRTNQ 93
            RDG DR+G  G AN+ARRS FPMINILRTNQ
Sbjct:  333 RDGADRMGESGAANFARRSSFPMINILRTNQ 363
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BLAST of mRNA_H-elongata_contig180530.4806.1 vs. uniprot
Match: A0A7S1BFT2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BFT2_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.560e-7
Identity = 23/31 (74.19%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 RDGQDRIGSGGGANYARRSPFPMINILRTNQ 93
            RDG+DR+G    AN+ARRSP+PMINILRTNQ
Sbjct:  217 RDGEDRMGDAAAANFARRSPWPMINILRTNQ 247
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180530.4806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2Q2_9PHAE5.640e-1090.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7N7_ECTSI5.660e-1090.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y0U9_9STRA3.540e-880.65Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S3XYD6_HETAK6.160e-880.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0Z2B5_9CRYP1.440e-777.42Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4JMW6_9STRA4.010e-777.42Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
L1JRB3_GUITC7.510e-777.42Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S1BDN7_9STRA7.530e-774.19Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0NF62_9CRYP7.560e-777.42Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S1BFT2_9STRA7.560e-774.19Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180530contigH-elongata_contig180530:922..1023 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue8.1e-08
Seed eggNOG ortholog2880.D7G7N7
EggNOG free text desc.Protein of unknown function (DUF1415)
EggNOG OGs2RXZW@2759,COG3310@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930041.2374072-CDS-H-elongata_contig180530:921..10231622930041.2374072-CDS-H-elongata_contig180530:921..1023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180530 922..1023 +
1691679257.9765768-CDS-H-elongata_contig180530:921..10231691679257.9765768-CDS-H-elongata_contig180530:921..1023Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180530 922..1023 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180530.4806.1prot_H-elongata_contig180530.4806.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180530 922..1023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180530.4806.1

>prot_H-elongata_contig180530.4806.1 ID=prot_H-elongata_contig180530.4806.1|Name=mRNA_H-elongata_contig180530.4806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=34bp
RDGQDRIGSGGGANYARRSPFPMINILRTNQASR
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mRNA from alignment at H-elongata_contig180530:922..1023+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180530.4806.1 ID=mRNA_H-elongata_contig180530.4806.1|Name=mRNA_H-elongata_contig180530.4806.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=102bp|location=Sequence derived from alignment at H-elongata_contig180530:922..1023+ (Himanthalia elongata Himel1 dioecious)
AGGGACGGGCAAGACCGCATCGGGAGCGGCGGTGGGGCCAACTACGCCCG
GCGATCCCCGTTCCCAATGATCAACATCCTCAGGACCAACCAGGCGAGTC
GG
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Coding sequence (CDS) from alignment at H-elongata_contig180530:922..1023+

>mRNA_H-elongata_contig180530.4806.1 ID=mRNA_H-elongata_contig180530.4806.1|Name=mRNA_H-elongata_contig180530.4806.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=204bp|location=Sequence derived from alignment at H-elongata_contig180530:922..1023+ (Himanthalia elongata Himel1 dioecious)
AGGGACGGGCAAGACCGCATCGGGAGCGGCGGTGGGGCCAACTACGCCCG
GCGATCCCCGTTCCCAATGATCAACATCCTCAGGACCAACCAGGCGAGTC
GGAGGGACGGGCAAGACCGCATCGGGAGCGGCGGTGGGGCCAACTACGCC
CGGCGATCCCCGTTCCCAATGATCAACATCCTCAGGACCAACCAGGCGAG
TCGG
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