mRNA_H-elongata_contig18040.4801.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18040.4801.1
Unique NamemRNA_H-elongata_contig18040.4801.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18040.4801.1 vs. uniprot
Match: D7FT68_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT68_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 4.760e-36
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    1 QVLFSNAPIIWFKPARKTDLVEKFSYACPVYKTSDRRGILSTTGHSTNFICSILLATNLDSSHWVQRGVAMLTSLDD 231
            +VLFS+APIIWFKP RK+D+VE  SYACPVYKTSDRRGILSTTGHSTNFIC I+LAT+L+ SHWVQRGVAMLT+LDD
Sbjct: 1615 KVLFSSAPIIWFKPQRKSDIVETPSYACPVYKTSDRRGILSTTGHSTNFICFIVLATHLEESHWVQRGVAMLTTLDD 1691
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BLAST of mRNA_H-elongata_contig18040.4801.1 vs. uniprot
Match: A0A6H5L4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R7_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.790e-36
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = 1 
Query:    1 QVLFSNAPIIWFKPARKTDLVEKFSYACPVYKTSDRRGILSTTGHSTNFICSILLATNLDSSHWVQRGVAMLTSLDD 231
            +VLFS+APIIWFKP RK+D+VE  SYACPVYKTSDRRGILSTTGHSTNFIC I+LAT+L+ SHWVQRGVAMLT+LDD
Sbjct: 4434 KVLFSSAPIIWFKPQRKSDIVETPSYACPVYKTSDRRGILSTTGHSTNFICFIVLATHLEESHWVQRGVAMLTTLDD 4510
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BLAST of mRNA_H-elongata_contig18040.4801.1 vs. uniprot
Match: A0A418FF74_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FF74_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.390e-30
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:    1 QVLFSNAPIIWFKPARKTDLVEKFSYACPVYKTSDRRGILSTTGHSTNFICSILLATNLDSSHWVQRGVAMLTSLDD 231
            ++LF++ P++WF+P++K+DLV K SY CPVYKTS+RRG LSTTGHSTNFIC I L TNL  +HWV RGVAML+ LDD
Sbjct:  320 KILFTSGPVLWFRPSKKSDLVPKKSYNCPVYKTSERRGTLSTTGHSTNFICFIRLPTNLPEAHWVARGVAMLSQLDD 396
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BLAST of mRNA_H-elongata_contig18040.4801.1 vs. uniprot
Match: A0A024TZT1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TZT1_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.060e-29
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 QVLFSNAPIIWFKPARKTDLVEKFSYACPVYKTSDRRGILSTTGHSTNFICSILLATNLDSSHWVQRGVAMLTSLDD 231
            +VLF++ P++WF+P +K+DLV K SY CPVYKTS+RRG LSTTGHSTNFIC I L TNL  +HWV RGVAML+ LDD
Sbjct: 4283 KVLFTSGPVLWFRPTKKSDLVPKKSYNCPVYKTSERRGTLSTTGHSTNFICFIRLPTNLPEAHWVARGVAMLSQLDD 4359
[Close]
BLAST of mRNA_H-elongata_contig18040.4801.1 vs. uniprot
Match: W4FTX2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FTX2_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.060e-29
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 1 
Query:    1 QVLFSNAPIIWFKPARKTDLVEKFSYACPVYKTSDRRGILSTTGHSTNFICSILLATNLDSSHWVQRGVAMLTSLDD 231
            ++LF++ P++WF+P++K+DLV K SY CPVYKTS+RRG LSTTGHSTNFIC I L TNL  +HWV RGVAML+ LDD
Sbjct: 4295 KILFTSGPVLWFRPSKKSDLVPKKSYNCPVYKTSERRGTLSTTGHSTNFICFIRLPTNLPEAHWVARGVAMLSQLDD 4371
[Close]
BLAST of mRNA_H-elongata_contig18040.4801.1 vs. uniprot
Match: A0A485KLK7_9STRA (Aste57867_8791 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLK7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.680e-29
Identity = 51/77 (66.23%), Postives = 64/77 (83.12%), Query Frame = 1 
Query:    1 QVLFSNAPIIWFKPARKTDLVEKFSYACPVYKTSDRRGILSTTGHSTNFICSILLATNLDSSHWVQRGVAMLTSLDD 231
            ++LF++ P++WF+P +K+DLV + SY CPVYKTS+RRG LSTTGHSTNFIC I L TNL  +HWV RGVAML+ LDD
Sbjct: 4263 KILFTSGPVLWFRPTKKSDLVPRKSYNCPVYKTSERRGTLSTTGHSTNFICFIRLPTNLPEAHWVARGVAMLSQLDD 4339
[Close]
BLAST of mRNA_H-elongata_contig18040.4801.1 vs. uniprot
Match: A0A6G0WD57_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WD57_9STRA)

HSP 1 Score: 117 bits (292), Expect = 9.350e-29
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 QVLFSNAPIIWFKPARKTDLVEKFSYACPVYKTSDRRGILSTTGHSTNFICSILLATNLDSSHWVQRGVAMLTSLDD 231
            +VLF+  P++WF+P +K++LV K SY CPVYKTS+RRG LSTTGHSTNFIC I L TNL  +HWV RGVAML+ LDD
Sbjct: 4171 KVLFTMGPVLWFRPTKKSELVPKKSYNCPVYKTSERRGTLSTTGHSTNFICYIRLPTNLPEAHWVARGVAMLSQLDD 4247
[Close]
BLAST of mRNA_H-elongata_contig18040.4801.1 vs. uniprot
Match: A0A1B6LB53_9HEMI (Dynein_C domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6LB53_9HEMI)

HSP 1 Score: 108 bits (269), Expect = 1.270e-28
Identity = 48/77 (62.34%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    1 QVLFSNAPIIWFKPARKTDLVEKFSYACPVYKTSDRRGILSTTGHSTNFICSILLATNLDSSHWVQRGVAMLTSLDD 231
            ++L+   PIIWFKP RK   V++ SY CP+YKTS RRGILSTTGHSTNF+  I L +NL  SHW+ RGVA L  LDD
Sbjct:   54 KILYDTIPIIWFKPGRKNQFVKEPSYTCPIYKTSARRGILSTTGHSTNFVMYISLPSNLPESHWINRGVAALCQLDD 130
[Close]
BLAST of mRNA_H-elongata_contig18040.4801.1 vs. uniprot
Match: A0A835YLN5_9STRA (Dynein heavy chain and region D6 of dynein motor-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.040e-28
Identity = 55/78 (70.51%), Postives = 64/78 (82.05%), Query Frame = 1 
Query:    1 QVLFSNAPIIWFKPARKTDLVEKFSYACPVYKTSDRRGILSTTGHSTNFICSILLA-TNLDSSHWVQRGVAMLTSLDD 231
            +VLFS APIIWF+P RK +LV +  Y CPVYKTSDRRG+LSTTGHSTNFIC I +A T++  SHWV RGV MLT+LDD
Sbjct: 3497 KVLFSLAPIIWFRPMRKEELVLEPHYNCPVYKTSDRRGVLSTTGHSTNFICYIRMASTDIPESHWVMRGVCMLTTLDD 3574
[Close]
BLAST of mRNA_H-elongata_contig18040.4801.1 vs. uniprot
Match: A0A1V9Z587_9STRA (Dynein heavy chain n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z587_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.130e-27
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 QVLFSNAPIIWFKPARKTDLVEKFSYACPVYKTSDRRGILSTTGHSTNFICSILLATNLDSSHWVQRGVAMLTSLDD 231
            +VLF+  P++WF+P RK+DLV + SY CPVYKTS+RRG LSTTGHSTNFIC I L ++L  +HWV RGVAML+ LDD
Sbjct: 4231 KVLFTLGPVLWFRPTRKSDLVIRKSYNCPVYKTSERRGTLSTTGHSTNFICFIRLPSHLPEAHWVARGVAMLSQLDD 4307
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18040.4801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT68_ECTSI4.760e-3683.12Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5L4R7_9PHAE4.790e-3683.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A418FF74_9STRA1.390e-3067.53Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024TZT1_9STRA1.060e-2968.83Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4FTX2_9STRA1.060e-2967.53Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A485KLK7_9STRA3.680e-2966.23Aste57867_8791 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0WD57_9STRA9.350e-2967.53Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A1B6LB53_9HEMI1.270e-2862.34Dynein_C domain-containing protein (Fragment) n=1 ... [more]
A0A835YLN5_9STRA6.040e-2870.51Dynein heavy chain and region D6 of dynein motor-d... [more]
A0A1V9Z587_9STRA1.130e-2766.23Dynein heavy chain n=3 Tax=Saprolegniaceae TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18040contigH-elongata_contig18040:6960..7193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.9
Seed ortholog evalue2.6e-25
Seed eggNOG ortholog157072.XP_008872584.1
KEGG koko:K10408
KEGG Pathwayko05016,map05016
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size234
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.7440238-CDS-H-elongata_contig18040:6959..71931622930040.7440238-CDS-H-elongata_contig18040:6959..7193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18040 6960..7193 -
1691679257.7768724-CDS-H-elongata_contig18040:6959..71931691679257.7768724-CDS-H-elongata_contig18040:6959..7193Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18040 6960..7193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18040.4801.1prot_H-elongata_contig18040.4801.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18040 6960..7193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18040.4801.1

>prot_H-elongata_contig18040.4801.1 ID=prot_H-elongata_contig18040.4801.1|Name=mRNA_H-elongata_contig18040.4801.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=78bp
QVLFSNAPIIWFKPARKTDLVEKFSYACPVYKTSDRRGILSTTGHSTNFI
CSILLATNLDSSHWVQRGVAMLTSLDD*
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mRNA from alignment at H-elongata_contig18040:6960..7193-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18040.4801.1 ID=mRNA_H-elongata_contig18040.4801.1|Name=mRNA_H-elongata_contig18040.4801.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at H-elongata_contig18040:6960..7193- (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGTTTTCTAACGCCCCGATCATCTGGTTTAAGCCAGCAAGAAA
AACAGACCTTGTGGAGAAGTTCTCGTACGCTTGTCCCGTCTACAAAACGT
CGGATAGAAGAGGTATACTGAGCACAACGGGTCACTCCACCAACTTCATC
TGCTCCATCTTGCTCGCGACTAACTTAGATTCATCGCACTGGGTGCAGCG
CGGCGTGGCTATGCTAACCTCCTTAGACGATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig18040:6960..7193-

>mRNA_H-elongata_contig18040.4801.1 ID=mRNA_H-elongata_contig18040.4801.1|Name=mRNA_H-elongata_contig18040.4801.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=468bp|location=Sequence derived from alignment at H-elongata_contig18040:6960..7193- (Himanthalia elongata Himel1 dioecious)
CAGGTGCTGTTTTCTAACGCCCCGATCATCTGGTTTAAGCCAGCAAGAAA
AACAGACCTTGTGGAGAAGTTCTCGTACGCTTGTCCCGTCTACAAAACGT
CGGATAGAAGAGGTATACTGAGCACAACGGGTCACTCCACCAACTTCATC
TGCTCCATCTTGCTCGCGACTAACTTAGATTCATCGCACTGGGTGCAGCG
CGGCGTGGCTATGCTAACCTCCTTAGACGATTGACAGGTGCTGTTTTCTA
ACGCCCCGATCATCTGGTTTAAGCCAGCAAGAAAAACAGACCTTGTGGAG
AAGTTCTCGTACGCTTGTCCCGTCTACAAAACGTCGGATAGAAGAGGTAT
ACTGAGCACAACGGGTCACTCCACCAACTTCATCTGCTCCATCTTGCTCG
CGACTAACTTAGATTCATCGCACTGGGTGCAGCGCGGCGTGGCTATGCTA
ACCTCCTTAGACGATTGA
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